RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TRPM3Q9HCF6 1732 aaPredicted RBP22.39■■□□□ 1.17
LIME1-209ENST00000494776 TESK2Q96S53 571 aa22.37■■□□□ 1.17
LIME1-209ENST00000494776 TMC1Q8TDI8 760 aa22.36■■□□□ 1.17
LIME1-209ENST00000494776 NUTM2GQ5VZR2 741 aa22.35■■□□□ 1.17
LIME1-209ENST00000494776 ABTB2Q8N961 1025 aa22.35■■□□□ 1.17
LIME1-209ENST00000494776 ZNF692Q9BU19 519 aaPredicted RBP22.35■■□□□ 1.17
LIME1-209ENST00000494776 ALS2Q96Q42 1657 aa22.34■■□□□ 1.17
LIME1-209ENST00000494776 TMF1P82094 1093 aa22.34■■□□□ 1.17
LIME1-209ENST00000494776 USP21Q9UK80 565 aa22.34■■□□□ 1.17
LIME1-209ENST00000494776 PUS7Q96PZ0 661 aaKnown RBP22.32■■□□□ 1.16
LIME1-209ENST00000494776 BRD4O60885 1362 aaPredicted RBP22.32■■□□□ 1.16
LIME1-209ENST00000494776 USP6P35125 1406 aa22.31■■□□□ 1.16
LIME1-209ENST00000494776 FNBP4Q8N3X1 1017 aaPredicted RBP22.31■■□□□ 1.16
LIME1-209ENST00000494776 QTRT2Q9H974 415 aaKnown RBP22.31■■□□□ 1.16
LIME1-209ENST00000494776 RXRBP28702 533 aa22.29■■□□□ 1.16
LIME1-209ENST00000494776 HDGFL2Q7Z4V5 671 aaPredicted RBP22.29■■□□□ 1.16
LIME1-209ENST00000494776 SLC12A5Q9H2X9 1139 aa22.29■■□□□ 1.16
LIME1-209ENST00000494776 MARF1Q9Y4F3 1742 aaKnown RBP22.28■■□□□ 1.16
LIME1-209ENST00000494776 KTN1Q86UP2 1357 aaKnown RBP22.28■■□□□ 1.16
LIME1-209ENST00000494776 EIF4G2P78344 907 aaKnown RBP eCLIP22.28■■□□□ 1.16
LIME1-209ENST00000494776 CDCA8Q53HL2 280 aa22.28■■□□□ 1.16
LIME1-209ENST00000494776 NLRP13Q86W25 1043 aa22.28■■□□□ 1.16
LIME1-209ENST00000494776 TERF2IPQ9NYB0 399 aa22.27■■□□□ 1.16
LIME1-209ENST00000494776 ABCA3Q99758 1704 aa22.26■■□□□ 1.15
LIME1-209ENST00000494776 TRPC5Q9UL62 973 aaPredicted RBP22.26■■□□□ 1.15
LIME1-209ENST00000494776 CPSF1Q10570 1443 aaKnown RBP22.25■■□□□ 1.15
LIME1-209ENST00000494776 NLRP6P59044 892 aa22.25■■□□□ 1.15
LIME1-209ENST00000494776 TTC21BQ7Z4L5 1316 aa22.25■■□□□ 1.15
LIME1-209ENST00000494776 FAM83GA6ND36 823 aa22.24■■□□□ 1.15
LIME1-209ENST00000494776 NINLQ9Y2I6 1382 aa22.24■■□□□ 1.15
LIME1-209ENST00000494776 RBM6P78332 1123 aaKnown RBP22.23■■□□□ 1.15
LIME1-209ENST00000494776 UNC5CLQ8IV45 518 aa22.23■■□□□ 1.15
LIME1-209ENST00000494776 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.23■■□□□ 1.15
LIME1-209ENST00000494776 PRDM11Q9NQV5 511 aa22.23■■□□□ 1.15
LIME1-209ENST00000494776 TTC21AQ8NDW8 1320 aa22.23■■□□□ 1.15
LIME1-209ENST00000494776 AKAP12Q02952 1782 aa22.22■■□□□ 1.15
LIME1-209ENST00000494776 HSPA5P11021 654 aaKnown RBP22.22■■□□□ 1.15
LIME1-209ENST00000494776 ZC3H6P61129 1189 aaKnown RBP22.22■■□□□ 1.15
LIME1-209ENST00000494776 SSH2Q76I76 1423 aa22.22■■□□□ 1.15
LIME1-209ENST00000494776 BCL9LQ86UU0 1499 aa22.22■■□□□ 1.15
LIME1-209ENST00000494776 SLIT2O94813 1529 aa22.21■■□□□ 1.15
LIME1-209ENST00000494776 USP19O94966 1318 aa22.2■■□□□ 1.14
LIME1-209ENST00000494776 GCP02774 474 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 POLR3GLQ9BT43 218 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 BTG4Q9NY30 223 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 CCDC9Q9Y3X0 531 aaKnown RBP22.19■■□□□ 1.14
LIME1-209ENST00000494776 A0A1W2PP64 1363 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 KIAA0232Q92628 1395 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 ATRNO75882 1429 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 CD163L1Q9NR16 1453 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 CRYBG1Q9Y4K1 1723 aa22.19■■□□□ 1.14
LIME1-209ENST00000494776 PHRF1Q9P1Y6 1649 aaKnown RBP22.18■■□□□ 1.14
LIME1-209ENST00000494776 CHRNA2Q15822 529 aa22.18■■□□□ 1.14
LIME1-209ENST00000494776 ZBTB7CA1YPR0 619 aa22.17■■□□□ 1.14
LIME1-209ENST00000494776 MON2Q7Z3U7 1717 aa22.17■■□□□ 1.14
LIME1-209ENST00000494776 EDC4Q6P2E9 1401 aaKnown RBP22.16■■□□□ 1.14
LIME1-209ENST00000494776 GJD4Q96KN9 370 aaPredicted RBP22.16■■□□□ 1.14
LIME1-209ENST00000494776 COL14A1Q05707 1796 aaKnown RBP22.16■■□□□ 1.14
LIME1-209ENST00000494776 PLCH1Q4KWH8 1693 aa22.16■■□□□ 1.14
LIME1-209ENST00000494776 PIK3C2AO00443 1686 aa22.15■■□□□ 1.14
LIME1-209ENST00000494776 ANKRD36BQ8N2N9 1353 aa22.14■■□□□ 1.14
LIME1-209ENST00000494776 NRKQ7Z2Y5 1582 aa22.14■■□□□ 1.13
LIME1-209ENST00000494776 SOX12O15370 315 aa22.14■■□□□ 1.13
LIME1-209ENST00000494776 NME9Q86XW9 330 aa22.14■■□□□ 1.13
LIME1-209ENST00000494776 KCNH5Q8NCM2 988 aa22.14■■□□□ 1.13
LIME1-209ENST00000494776 CDK12Q9NYV4 1490 aaPredicted RBP22.14■■□□□ 1.13
LIME1-209ENST00000494776 NWD2Q9ULI1 1742 aa22.14■■□□□ 1.13
LIME1-209ENST00000494776 VPS72Q15906 364 aa22.13■■□□□ 1.13
LIME1-209ENST00000494776 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.13■■□□□ 1.13
LIME1-209ENST00000494776 ZRANB1Q9UGI0 708 aa22.12■■□□□ 1.13
LIME1-209ENST00000494776 CPDO75976 1380 aa22.12■■□□□ 1.13
LIME1-209ENST00000494776 EVA1CP58658 441 aa22.11■■□□□ 1.13
LIME1-209ENST00000494776 STRN4Q9NRL3 753 aa22.11■■□□□ 1.13
LIME1-209ENST00000494776 SLIT3O75094 1523 aa22.1■■□□□ 1.13
LIME1-209ENST00000494776 RGS12O14924 1447 aa22.09■■□□□ 1.13
LIME1-209ENST00000494776 USP31Q70CQ4 1352 aa22.09■■□□□ 1.13
LIME1-209ENST00000494776 COG3Q96JB2 828 aa22.06■■□□□ 1.12
LIME1-209ENST00000494776 NRAPQ86VF7 1730 aa22.06■■□□□ 1.12
LIME1-209ENST00000494776 A0A0G2JS52 829 aa22.05■■□□□ 1.12
LIME1-209ENST00000494776 MYT1Q01538 1121 aa22.05■■□□□ 1.12
LIME1-209ENST00000494776 ARHGEF25Q86VW2 580 aa22.04■■□□□ 1.12
LIME1-209ENST00000494776 GLI3P10071 1580 aa22.04■■□□□ 1.12
LIME1-209ENST00000494776 AATKQ6ZMQ8 1374 aa22.03■■□□□ 1.12
LIME1-209ENST00000494776 SPATA31A5Q5VU36 1347 aa22.03■■□□□ 1.12
LIME1-209ENST00000494776 SPATA31A7Q8IWB4 1347 aa22.03■■□□□ 1.12
LIME1-209ENST00000494776 MYOM1P52179 1685 aa22.02■■□□□ 1.12
LIME1-209ENST00000494776 CAMTA1Q9Y6Y1 1673 aa22.02■■□□□ 1.12
LIME1-209ENST00000494776 UPF1Q92900 1129 aaKnown RBP eCLIP22.02■■□□□ 1.121e-14■□□□□ 10.4
LIME1-209ENST00000494776 FAM98CQ17RN3 349 aaKnown RBP22.01■■□□□ 1.11
LIME1-209ENST00000494776 SEPT12Q8IYM1 358 aa22.01■■□□□ 1.11
LIME1-209ENST00000494776 USP35Q9P2H5 1018 aa22.01■■□□□ 1.11
LIME1-209ENST00000494776 OVOS2A0A0J9YW53 1432 aa22■■□□□ 1.11
LIME1-209ENST00000494776 OVOS2Q6IE36 1432 aa22■■□□□ 1.11
LIME1-209ENST00000494776 C11orf95C9JLR9 678 aaPredicted RBP22■■□□□ 1.11
LIME1-209ENST00000494776 FYB1O15117 783 aa22■■□□□ 1.11
LIME1-209ENST00000494776 LARP1Q6PKG0 1096 aaKnown RBP22■■□□□ 1.11
LIME1-209ENST00000494776 CARD14Q9BXL6 1004 aa22■■□□□ 1.11
LIME1-209ENST00000494776 GGNBP2Q9H3C7 697 aa22■■□□□ 1.11
LIME1-209ENST00000494776 NFAT5O94916 1531 aa22■■□□□ 1.11
LIME1-209ENST00000494776 NSD3Q9BZ95 1437 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms