RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 HSCBQ8IWL3 235 aa19.35■□□□□ 0.69
SDF4-207ENST00000494748 TNPO1Q92973 898 aaKnown RBP19.35■□□□□ 0.69
SDF4-207ENST00000494748 NAP1L5Q96NT1 182 aaPredicted RBP19.35■□□□□ 0.69
SDF4-207ENST00000494748 C14orf93Q9H972 538 aaKnown RBP19.35■□□□□ 0.69
SDF4-207ENST00000494748 ISY1Q9ULR0 285 aaKnown RBP19.35■□□□□ 0.69
SDF4-207ENST00000494748 NSD2O96028 1365 aa19.35■□□□□ 0.69
SDF4-207ENST00000494748 ATF7IPQ6VMQ6 1270 aa19.35■□□□□ 0.69
SDF4-207ENST00000494748 DDX19BQ9UMR2 479 aa19.35■□□□□ 0.69
SDF4-207ENST00000494748 ANKRD36BQ8N2N9 1353 aa19.35■□□□□ 0.69
SDF4-207ENST00000494748 SMC4Q9NTJ3 1288 aa19.34■□□□□ 0.69
SDF4-207ENST00000494748 NUCB1Q02818 461 aa19.34■□□□□ 0.69
SDF4-207ENST00000494748 CFAP53Q96M91 514 aa19.33■□□□□ 0.69
SDF4-207ENST00000494748 CAMSAP1Q5T5Y3 1602 aa19.33■□□□□ 0.68
SDF4-207ENST00000494748 RAB3GAP1Q15042 981 aa19.33■□□□□ 0.68
SDF4-207ENST00000494748 TMEM57Q8N5G2 664 aa19.33■□□□□ 0.68
SDF4-207ENST00000494748 MED14O60244 1454 aa19.33■□□□□ 0.68
SDF4-207ENST00000494748 ESPNB1AK53 854 aa19.33■□□□□ 0.68
SDF4-207ENST00000494748 U2AF1L5P0DN76 240 aaPredicted RBP19.33■□□□□ 0.68
SDF4-207ENST00000494748 U2AF1Q01081 240 aaKnown RBP eCLIP19.33■□□□□ 0.68
SDF4-207ENST00000494748 NOB1Q9ULX3 412 aaKnown RBP19.32■□□□□ 0.68
SDF4-207ENST00000494748 ITPRIPQ8IWB1 547 aa19.32■□□□□ 0.68
SDF4-207ENST00000494748 CD2BP2O95400 341 aaKnown RBP19.31■□□□□ 0.68
SDF4-207ENST00000494748 ABCC11Q96J66 1382 aa19.31■□□□□ 0.68
SDF4-207ENST00000494748 AK9Q5TCS8 1911 aa19.31■□□□□ 0.68
SDF4-207ENST00000494748 TMPOP42166 694 aaKnown RBP19.3■□□□□ 0.68
SDF4-207ENST00000494748 CIZ1Q9ULV3 898 aaPredicted RBP19.3■□□□□ 0.68
SDF4-207ENST00000494748 SIGLEC1Q9BZZ2 1709 aa19.3■□□□□ 0.68
SDF4-207ENST00000494748 TMEM132EQ6IEE7 984 aa19.29■□□□□ 0.68
SDF4-207ENST00000494748 PIK3C2BO00750 1634 aa19.29■□□□□ 0.68
SDF4-207ENST00000494748 PUS7Q96PZ0 661 aaKnown RBP19.28■□□□□ 0.68
SDF4-207ENST00000494748 IL16Q14005 1332 aa19.28■□□□□ 0.68
SDF4-207ENST00000494748 NPATQ14207 1427 aa19.28■□□□□ 0.68
SDF4-207ENST00000494748 ARHGAP31Q2M1Z3 1444 aa19.27■□□□□ 0.68
SDF4-207ENST00000494748 RRP9O43818 475 aaKnown RBP19.27■□□□□ 0.68
SDF4-207ENST00000494748 PPIP5K1Q6PFW1 1433 aa19.26■□□□□ 0.67
SDF4-207ENST00000494748 FRMPD1Q5SYB0 1578 aa19.26■□□□□ 0.67
SDF4-207ENST00000494748 BMP2KLQ5H9B9 411 aa19.26■□□□□ 0.67
SDF4-207ENST00000494748 CHD1LQ86WJ1 897 aa19.26■□□□□ 0.67
SDF4-207ENST00000494748 HSP90AA1P07900 732 aaKnown RBP19.25■□□□□ 0.67
SDF4-207ENST00000494748 LNPKQ9C0E8 428 aa19.25■□□□□ 0.67
SDF4-207ENST00000494748 CDC42BPGQ6DT37 1551 aa19.25■□□□□ 0.67
SDF4-207ENST00000494748 HECW2Q9P2P5 1572 aa19.25■□□□□ 0.67
SDF4-207ENST00000494748 NEXMIFQ5QGS0 1516 aa19.25■□□□□ 0.67
SDF4-207ENST00000494748 A0A1W2PP64 1363 aa19.25■□□□□ 0.67
SDF4-207ENST00000494748 CLEC17AQ6ZS10 378 aa19.24■□□□□ 0.67
SDF4-207ENST00000494748 CD163L1Q9NR16 1453 aa19.23■□□□□ 0.67
SDF4-207ENST00000494748 CLTCQ00610 1675 aaKnown RBP19.23■□□□□ 0.67
SDF4-207ENST00000494748 KNDC1Q76NI1 1749 aa19.23■□□□□ 0.67
SDF4-207ENST00000494748 HSP90AA2PQ14568 343 aaPredicted RBP19.23■□□□□ 0.67
SDF4-207ENST00000494748 REREQ9P2R6 1566 aa19.23■□□□□ 0.67
SDF4-207ENST00000494748 LRRC7Q96NW7 1537 aa19.22■□□□□ 0.67
SDF4-207ENST00000494748 KIF20BQ96Q89 1820 aa19.22■□□□□ 0.67
SDF4-207ENST00000494748 KIF16BQ96L93 1317 aa19.22■□□□□ 0.67
SDF4-207ENST00000494748 GBP4Q96PP9 640 aa19.21■□□□□ 0.67
SDF4-207ENST00000494748 PPP1R9BQ96SB3 815 aa19.21■□□□□ 0.67
SDF4-207ENST00000494748 PIK3R4Q99570 1358 aa19.21■□□□□ 0.67
SDF4-207ENST00000494748 SKOR2Q2VWA4 1001 aaPredicted RBP19.21■□□□□ 0.67
SDF4-207ENST00000494748 RBM42Q9BTD8 480 aaKnown RBP19.21■□□□□ 0.67
SDF4-207ENST00000494748 EVC2Q86UK5 1308 aa19.21■□□□□ 0.67
SDF4-207ENST00000494748 HSP90AB1P08238 724 aaKnown RBP19.2■□□□□ 0.66
SDF4-207ENST00000494748 BRPF1P55201 1214 aaPredicted RBP19.2■□□□□ 0.66
SDF4-207ENST00000494748 ALDH1L2Q3SY69 923 aa19.2■□□□□ 0.66
SDF4-207ENST00000494748 IBTKQ9P2D0 1353 aaPredicted RBP19.2■□□□□ 0.66
SDF4-207ENST00000494748 GAS2L2Q8NHY3 880 aa19.2■□□□□ 0.66
SDF4-207ENST00000494748 PNPLA6Q8IY17 1366 aa19.19■□□□□ 0.66
SDF4-207ENST00000494748 TBC1D9Q6ZT07 1266 aa19.19■□□□□ 0.66
SDF4-207ENST00000494748 CABP2Q9NPB3 220 aa19.19■□□□□ 0.66
SDF4-207ENST00000494748 K7ELQ4 463 aaPredicted RBP19.19■□□□□ 0.66
SDF4-207ENST00000494748 PTCH1Q13635 1447 aa19.19■□□□□ 0.66
SDF4-207ENST00000494748 ZBTB7BO15156 539 aaPredicted RBP19.18■□□□□ 0.66
SDF4-207ENST00000494748 SSFA2P28290 1259 aa19.18■□□□□ 0.66
SDF4-207ENST00000494748 U2SURPO15042 1029 aaKnown RBP19.18■□□□□ 0.66
SDF4-207ENST00000494748 SIRT2Q8IXJ6 389 aa19.18■□□□□ 0.66
SDF4-207ENST00000494748 RPGRIP1LQ68CZ1 1315 aa19.17■□□□□ 0.66
SDF4-207ENST00000494748 RIPK4P57078 832 aa19.17■□□□□ 0.66
SDF4-207ENST00000494748 CHGAP10645 457 aaKnown RBP19.17■□□□□ 0.66
SDF4-207ENST00000494748 FOXD4L1Q9NU39 408 aa19.17■□□□□ 0.66
SDF4-207ENST00000494748 ABCC3O15438 1527 aa19.17■□□□□ 0.66
SDF4-207ENST00000494748 MYO5BQ9ULV0 1848 aa19.16■□□□□ 0.66
SDF4-207ENST00000494748 IPO8O15397 1037 aaKnown RBP19.16■□□□□ 0.66
SDF4-207ENST00000494748 PTMSP20962 102 aa19.16■□□□□ 0.66
SDF4-207ENST00000494748 PKNOX2Q96KN3 472 aa19.16■□□□□ 0.66
SDF4-207ENST00000494748 GGNBP2Q9H3C7 697 aa19.16■□□□□ 0.66
SDF4-207ENST00000494748 DLG5Q8TDM6 1919 aa19.15■□□□□ 0.66
SDF4-207ENST00000494748 FAM135BQ49AJ0 1406 aa19.15■□□□□ 0.66
SDF4-207ENST00000494748 GLIPR1L2Q4G1C9 344 aa19.15■□□□□ 0.66
SDF4-207ENST00000494748 ZMYND15Q9H091 742 aa19.14■□□□□ 0.66
SDF4-207ENST00000494748 CCDC173Q0VFZ6 552 aa19.14■□□□□ 0.65
SDF4-207ENST00000494748 TRIM44Q96DX7 344 aaPredicted RBP19.14■□□□□ 0.65
SDF4-207ENST00000494748 PTPRMP28827 1452 aa19.14■□□□□ 0.65
SDF4-207ENST00000494748 FYB1O15117 783 aa19.14■□□□□ 0.65
SDF4-207ENST00000494748 GCC1Q96CN9 775 aa19.14■□□□□ 0.65
SDF4-207ENST00000494748 KLHL40Q2TBA0 621 aa19.13■□□□□ 0.65
SDF4-207ENST00000494748 ANKRD45Q5TZF3 282 aa19.13■□□□□ 0.65
SDF4-207ENST00000494748 VSIG10Q8N0Z9 540 aa19.13■□□□□ 0.65
SDF4-207ENST00000494748 BAG4O95429 457 aaKnown RBP19.13■□□□□ 0.65
SDF4-207ENST00000494748 TPM2P07951 284 aa19.13■□□□□ 0.65
SDF4-207ENST00000494748 C1orf115Q9H7X2 142 aa19.13■□□□□ 0.65
SDF4-207ENST00000494748 CYP2E1P05181 493 aaPredicted RBP19.12■□□□□ 0.65
SDF4-207ENST00000494748 MRPL50Q8N5N7 158 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms