RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 TRPM3Q9HCF6 1732 aaPredicted RBP24.78■■□□□ 1.56
PDLIM7-208ENST00000493815 TNS3Q68CZ2 1445 aa24.78■■□□□ 1.56
PDLIM7-208ENST00000493815 NUTM2GQ5VZR2 741 aa24.78■■□□□ 1.56
PDLIM7-208ENST00000493815 PNPLA6Q8IY17 1366 aa24.77■■□□□ 1.56
PDLIM7-208ENST00000493815 AKAP12Q02952 1782 aa24.76■■□□□ 1.55
PDLIM7-208ENST00000493815 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.76■■□□□ 1.55
PDLIM7-208ENST00000493815 ANKRD36BQ8N2N9 1353 aa24.76■■□□□ 1.55
PDLIM7-208ENST00000493815 SSH2Q76I76 1423 aa24.75■■□□□ 1.55
PDLIM7-208ENST00000493815 TTC21BQ7Z4L5 1316 aa24.74■■□□□ 1.55
PDLIM7-208ENST00000493815 ABTB2Q8N961 1025 aa24.74■■□□□ 1.55
PDLIM7-208ENST00000493815 CABLES1Q8TDN4 633 aa24.73■■□□□ 1.55
PDLIM7-208ENST00000493815 CARD14Q9BXL6 1004 aa24.73■■□□□ 1.55
PDLIM7-208ENST00000493815 NUTM2BA6NNL0 878 aaPredicted RBP24.72■■□□□ 1.55
PDLIM7-208ENST00000493815 NUTM2EB1AL46 878 aaPredicted RBP24.72■■□□□ 1.55
PDLIM7-208ENST00000493815 NUTM2AQ8IVF1 878 aaPredicted RBP24.72■■□□□ 1.55
PDLIM7-208ENST00000493815 PANK3Q9H999 370 aa24.72■■□□□ 1.55
PDLIM7-208ENST00000493815 MON2Q7Z3U7 1717 aa24.72■■□□□ 1.55
PDLIM7-208ENST00000493815 ARHGEF10O15013 1369 aa24.7■■□□□ 1.55
PDLIM7-208ENST00000493815 ALS2Q96Q42 1657 aa24.7■■□□□ 1.54
PDLIM7-208ENST00000493815 NRKQ7Z2Y5 1582 aa24.7■■□□□ 1.54
PDLIM7-208ENST00000493815 EDC4Q6P2E9 1401 aaKnown RBP24.7■■□□□ 1.54
PDLIM7-208ENST00000493815 SHPRHQ149N8 1683 aa24.69■■□□□ 1.54
PDLIM7-208ENST00000493815 NME9Q86XW9 330 aa24.69■■□□□ 1.54
PDLIM7-208ENST00000493815 ZRANB1Q9UGI0 708 aa24.69■■□□□ 1.54
PDLIM7-208ENST00000493815 BRD4O60885 1362 aaPredicted RBP24.68■■□□□ 1.54
PDLIM7-208ENST00000493815 NLRP6P59044 892 aa24.67■■□□□ 1.54
PDLIM7-208ENST00000493815 TTC21AQ8NDW8 1320 aa24.67■■□□□ 1.54
PDLIM7-208ENST00000493815 NSD3Q9BZ95 1437 aa24.67■■□□□ 1.54
PDLIM7-208ENST00000493815 SPATA31A6Q5VVP1 1343 aa24.65■■□□□ 1.54
PDLIM7-208ENST00000493815 PIK3C2AO00443 1686 aa24.65■■□□□ 1.54
PDLIM7-208ENST00000493815 COL22A1Q8NFW1 1626 aaPredicted RBP24.64■■□□□ 1.54
PDLIM7-208ENST00000493815 LRP6O75581 1613 aa24.64■■□□□ 1.53
PDLIM7-208ENST00000493815 ADAMTS2O95450 1211 aa24.63■■□□□ 1.53
PDLIM7-208ENST00000493815 HAP1P54257 671 aaPredicted RBP24.63■■□□□ 1.53
PDLIM7-208ENST00000493815 NLRP13Q86W25 1043 aa24.62■■□□□ 1.53
PDLIM7-208ENST00000493815 MED1Q15648 1581 aaPredicted RBP24.62■■□□□ 1.53
PDLIM7-208ENST00000493815 GGNBP2Q9H3C7 697 aa24.61■■□□□ 1.53
PDLIM7-208ENST00000493815 FYB1O15117 783 aa24.6■■□□□ 1.53
PDLIM7-208ENST00000493815 SOX12O15370 315 aa24.6■■□□□ 1.53
PDLIM7-208ENST00000493815 ZNF316A6NFI3 1004 aaPredicted RBP24.59■■□□□ 1.53
PDLIM7-208ENST00000493815 USP19O94966 1318 aa24.58■■□□□ 1.53
PDLIM7-208ENST00000493815 MEX3CQ5U5Q3 659 aaKnown RBP24.57■■□□□ 1.52
PDLIM7-208ENST00000493815 GCP02774 474 aa24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 KNSTRNQ9Y448 316 aa24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 CGNL1Q0VF96 1302 aa24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 ZC3H6P61129 1189 aaKnown RBP24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 DDX10Q13206 875 aaKnown RBP24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 USP31Q70CQ4 1352 aa24.56■■□□□ 1.52
PDLIM7-208ENST00000493815 ABCA3Q99758 1704 aa24.55■■□□□ 1.52
PDLIM7-208ENST00000493815 PER1O15534 1290 aaPredicted RBP24.55■■□□□ 1.52
PDLIM7-208ENST00000493815 C8orf37Q96NL8 207 aa24.55■■□□□ 1.52
PDLIM7-208ENST00000493815 MARF1Q9Y4F3 1742 aaKnown RBP24.55■■□□□ 1.52
PDLIM7-208ENST00000493815 CRYBG1Q9Y4K1 1723 aa24.55■■□□□ 1.52
PDLIM7-208ENST00000493815 CNGB1Q14028 1251 aaPredicted RBP24.54■■□□□ 1.52
PDLIM7-208ENST00000493815 COG3Q96JB2 828 aa24.54■■□□□ 1.52
PDLIM7-208ENST00000493815 OVOS2A0A0J9YW53 1432 aa24.53■■□□□ 1.52
PDLIM7-208ENST00000493815 OVOS2Q6IE36 1432 aa24.53■■□□□ 1.52
PDLIM7-208ENST00000493815 PHRF1Q9P1Y6 1649 aaKnown RBP24.53■■□□□ 1.52
PDLIM7-208ENST00000493815 FBLN1P23142 703 aa24.53■■□□□ 1.52
PDLIM7-208ENST00000493815 ZBTB7CA1YPR0 619 aa24.52■■□□□ 1.52
PDLIM7-208ENST00000493815 SLIT3O75094 1523 aa24.51■■□□□ 1.51
PDLIM7-208ENST00000493815 KIAA0232Q92628 1395 aa24.51■■□□□ 1.51
PDLIM7-208ENST00000493815 FAM83GA6ND36 823 aa24.5■■□□□ 1.51
PDLIM7-208ENST00000493815 KIF20BQ96Q89 1820 aa24.5■■□□□ 1.51
PDLIM7-208ENST00000493815 CHRNA2Q15822 529 aa24.5■■□□□ 1.51
PDLIM7-208ENST00000493815 AMER1Q5JTC6 1135 aaPredicted RBP24.5■■□□□ 1.51
PDLIM7-208ENST00000493815 NGLY1Q96IV0 654 aa24.49■■□□□ 1.51
PDLIM7-208ENST00000493815 CC2D1BQ5T0F9 858 aaKnown RBP24.48■■□□□ 1.51
PDLIM7-208ENST00000493815 KCNH5Q8NCM2 988 aa24.48■■□□□ 1.51
PDLIM7-208ENST00000493815 PRDM11Q9NQV5 511 aa24.48■■□□□ 1.51
PDLIM7-208ENST00000493815 TNNT2P45379 298 aaPredicted RBP24.47■■□□□ 1.51
PDLIM7-208ENST00000493815 USP54Q70EL1 1684 aa24.46■■□□□ 1.51
PDLIM7-208ENST00000493815 NFAT5O94916 1531 aa24.46■■□□□ 1.51
PDLIM7-208ENST00000493815 AFF2P51816 1311 aa24.44■■□□□ 1.5
PDLIM7-208ENST00000493815 PHF23Q9BUL5 403 aaPredicted RBP24.43■■□□□ 1.5
PDLIM7-208ENST00000493815 CPDO75976 1380 aa24.43■■□□□ 1.5
PDLIM7-208ENST00000493815 RRS1Q15050 365 aaKnown RBP24.43■■□□□ 1.5
PDLIM7-208ENST00000493815 ARHGEF25Q86VW2 580 aa24.43■■□□□ 1.5
PDLIM7-208ENST00000493815 MORC1Q86VD1 984 aa24.42■■□□□ 1.5
PDLIM7-208ENST00000493815 NSD2O96028 1365 aa24.41■■□□□ 1.5
PDLIM7-208ENST00000493815 BTG4Q9NY30 223 aa24.4■■□□□ 1.5
PDLIM7-208ENST00000493815 RGS17Q9UGC6 210 aaPredicted RBP24.4■■□□□ 1.5
PDLIM7-208ENST00000493815 FNBP4Q8N3X1 1017 aaPredicted RBP24.4■■□□□ 1.5
PDLIM7-208ENST00000493815 MAP3K19Q56UN5 1328 aa24.38■■□□□ 1.49
PDLIM7-208ENST00000493815 USP21Q9UK80 565 aa24.38■■□□□ 1.49
PDLIM7-208ENST00000493815 AXIN2Q9Y2T1 843 aa24.38■■□□□ 1.49
PDLIM7-208ENST00000493815 SLIT2O94813 1529 aa24.37■■□□□ 1.49
PDLIM7-208ENST00000493815 ANKRD26Q9UPS8 1709 aa24.37■■□□□ 1.49
PDLIM7-208ENST00000493815 BCL9LQ86UU0 1499 aa24.37■■□□□ 1.49
PDLIM7-208ENST00000493815 COL14A1Q05707 1796 aaKnown RBP24.36■■□□□ 1.49
PDLIM7-208ENST00000493815 AATKQ6ZMQ8 1374 aa24.36■■□□□ 1.49
PDLIM7-208ENST00000493815 EMILIN1Q9Y6C2 1016 aa24.36■■□□□ 1.49
PDLIM7-208ENST00000493815 PLCH1Q4KWH8 1693 aa24.35■■□□□ 1.49
PDLIM7-208ENST00000493815 NPC1L1Q9UHC9 1359 aa24.35■■□□□ 1.49
PDLIM7-208ENST00000493815 PPM1GO15355 546 aaPredicted RBP24.35■■□□□ 1.49
PDLIM7-208ENST00000493815 CAMTA1Q9Y6Y1 1673 aa24.35■■□□□ 1.49
PDLIM7-208ENST00000493815 STRN4Q9NRL3 753 aa24.34■■□□□ 1.49
PDLIM7-208ENST00000493815 AMPHP49418 695 aa24.34■■□□□ 1.49
PDLIM7-208ENST00000493815 UNC5CLQ8IV45 518 aa24.34■■□□□ 1.49
PDLIM7-208ENST00000493815 LTN1O94822 1766 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms