RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 HSPA5P11021 654 aaKnown RBP8.61□□□□□ -1.03
VPS13B-205ENST00000493587 LRPPRCP42704 1394 aaKnown RBP8.61□□□□□ -1.03
VPS13B-205ENST00000493587 RRP1P56182 461 aaKnown RBP8.61□□□□□ -1.03
VPS13B-205ENST00000493587 TRERF1Q96PN7 1200 aa8.61□□□□□ -1.03
VPS13B-205ENST00000493587 MCM4P33991 863 aa8.6□□□□□ -1.03
VPS13B-205ENST00000493587 ARHGAP31Q2M1Z3 1444 aa8.6□□□□□ -1.03
VPS13B-205ENST00000493587 KIF7Q2M1P5 1343 aa8.6□□□□□ -1.03
VPS13B-205ENST00000493587 TMED8Q6PL24 325 aaPredicted RBP8.59□□□□□ -1.03
VPS13B-205ENST00000493587 SMG6Q86US8 1419 aaKnown RBP8.59□□□□□ -1.03
VPS13B-205ENST00000493587 CCDC66A2RUB6 948 aa8.59□□□□□ -1.03
VPS13B-205ENST00000493587 CCDC173Q0VFZ6 552 aa8.59□□□□□ -1.04
VPS13B-205ENST00000493587 RIMS1Q86UR5 1692 aaKnown RBP8.58□□□□□ -1.04
VPS13B-205ENST00000493587 UPF2Q9HAU5 1272 aaKnown RBP8.58□□□□□ -1.04
VPS13B-205ENST00000493587 SPATA31D1Q6ZQQ2 1576 aa8.58□□□□□ -1.04
VPS13B-205ENST00000493587 NUP155O75694 1391 aa8.58□□□□□ -1.04
VPS13B-205ENST00000493587 CSPP1Q1MSJ5 1256 aa8.58□□□□□ -1.04
VPS13B-205ENST00000493587 NASPP49321 788 aaPredicted RBP8.57□□□□□ -1.04
VPS13B-205ENST00000493587 ZNF622Q969S3 477 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS13B-205ENST00000493587 SLC52A1Q9NWF4 448 aa8.57□□□□□ -1.04
VPS13B-205ENST00000493587 RCAN3Q9UKA8 241 aa8.57□□□□□ -1.04
VPS13B-205ENST00000493587 USP47Q96K76 1375 aa8.57□□□□□ -1.04
VPS13B-205ENST00000493587 SASS6Q6UVJ0 657 aa8.57□□□□□ -1.04
VPS13B-205ENST00000493587 ARHGEF40Q8TER5 1519 aa8.57□□□□□ -1.04
VPS13B-205ENST00000493587 PRKRIP1Q9H875 184 aaPredicted RBP8.57□□□□□ -1.04
VPS13B-205ENST00000493587 PIK3C2GO75747 1445 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 AXDND1Q5T1B0 1012 aaPredicted RBP8.56□□□□□ -1.04
VPS13B-205ENST00000493587 CCDC9Q9Y3X0 531 aaKnown RBP8.56□□□□□ -1.04
VPS13B-205ENST00000493587 USP54Q70EL1 1684 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 TOPAZ1Q8N9V7 1692 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 PARD3Q8TEW0 1356 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 VGFO15240 615 aaPredicted RBP8.56□□□□□ -1.04
VPS13B-205ENST00000493587 TIGD1Q96MW7 591 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 TESK2Q96S53 571 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 PLIN1O60240 522 aa8.56□□□□□ -1.04
VPS13B-205ENST00000493587 ISY1Q9ULR0 285 aaKnown RBP8.56□□□□□ -1.04
VPS13B-205ENST00000493587 MARF1Q9Y4F3 1742 aaKnown RBP8.55□□□□□ -1.04
VPS13B-205ENST00000493587 PKD2Q13563 968 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 RALBP1Q15311 655 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 TSC1Q92574 1164 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 AKAP12Q02952 1782 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 NPATQ14207 1427 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 DDX11L8A8MPP1 907 aa8.55□□□□□ -1.04
VPS13B-205ENST00000493587 ERICH4A6NGS2 130 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 NBPF1Q3BBV0 1214 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 BANK1Q8NDB2 785 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 SLC4A1APQ9BWU0 796 aaKnown RBP8.54□□□□□ -1.04
VPS13B-205ENST00000493587 ERVK-7P63135 1459 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 KIF20BQ96Q89 1820 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 NRKQ7Z2Y5 1582 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 BLMP54132 1417 aaPredicted RBP8.54□□□□□ -1.04
VPS13B-205ENST00000493587 CFAP44Q96MT7 982 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 RNF123Q5XPI4 1314 aa8.54□□□□□ -1.04
VPS13B-205ENST00000493587 UBR1Q8IWV7 1749 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 LMOD3Q0VAK6 560 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 VIRMAQ69YN4 1812 aaKnown RBP8.53□□□□□ -1.04
VPS13B-205ENST00000493587 LOC102724159A0A0B4J2E5 919 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 PER1O15534 1290 aaPredicted RBP8.53□□□□□ -1.04
VPS13B-205ENST00000493587 PWP2Q15269 919 aaKnown RBP8.53□□□□□ -1.04
VPS13B-205ENST00000493587 EFCAB2Q5VUJ9 269 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 ZNF526Q8TF50 670 aaPredicted RBP8.53□□□□□ -1.04
VPS13B-205ENST00000493587 CRBNQ96SW2 442 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 ZFYVE9O95405 1425 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 FAM177BA6PVY3 158 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 TSPY4P0CV99 314 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 TSPY10P0CW01 314 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 ATP2B3Q16720 1220 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 EP400NLQ6ZTU2 488 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 PDCL2Q8N4E4 241 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 AFAP1Q8N556 730 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 KIF3AQ9Y496 699 aa8.53□□□□□ -1.04
VPS13B-205ENST00000493587 SBNO2Q9Y2G9 1366 aa8.52□□□□□ -1.05
VPS13B-205ENST00000493587 CCDC144AA2RUR9 1427 aa8.52□□□□□ -1.05
VPS13B-205ENST00000493587 KTN1Q86UP2 1357 aaKnown RBP8.52□□□□□ -1.05
VPS13B-205ENST00000493587 MON2Q7Z3U7 1717 aa8.52□□□□□ -1.05
VPS13B-205ENST00000493587 C8orf34Q49A92 452 aa8.52□□□□□ -1.05
VPS13B-205ENST00000493587 TULP4Q9NRJ4 1543 aa8.52□□□□□ -1.05
VPS13B-205ENST00000493587 DISP3Q9P2K9 1392 aa8.51□□□□□ -1.05
VPS13B-205ENST00000493587 TNNT1P13805 278 aa8.51□□□□□ -1.05
VPS13B-205ENST00000493587 GPATCH11Q8N954 259 aa8.51□□□□□ -1.05
VPS13B-205ENST00000493587 NALCNQ8IZF0 1738 aa8.51□□□□□ -1.05
VPS13B-205ENST00000493587 JARID2Q92833 1246 aaPredicted RBP8.51□□□□□ -1.05
VPS13B-205ENST00000493587 PANK3Q9H999 370 aa8.51□□□□□ -1.05
VPS13B-205ENST00000493587 CFAP65Q6ZU64 1925 aaKnown RBP8.51□□□□□ -1.05
VPS13B-205ENST00000493587 PRR29P0C7W0 189 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 TMX1Q9H3N1 280 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 CHMP5Q9NZZ3 219 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 ADGRB2O60241 1585 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 SCAF11Q99590 1463 aaKnown RBP8.5□□□□□ -1.05
VPS13B-205ENST00000493587 CD109Q6YHK3 1445 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 MLECQ14165 292 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 FAM43BQ6ZT52 329 aaPredicted RBP8.5□□□□□ -1.05
VPS13B-205ENST00000493587 GAS2L3Q86XJ1 694 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 ROCK2O75116 1388 aaKnown RBP8.5□□□□□ -1.05
VPS13B-205ENST00000493587 GTF2A1P52655 376 aaPredicted RBP8.5□□□□□ -1.05
VPS13B-205ENST00000493587 PLCD4Q9BRC7 762 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 TSPYL1Q9H0U9 437 aa8.5□□□□□ -1.05
VPS13B-205ENST00000493587 CALCOCO1Q9P1Z2 691 aa8.49□□□□□ -1.05
VPS13B-205ENST00000493587 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.49□□□□□ -1.05
VPS13B-205ENST00000493587 TSPOAP1O95153 1857 aa8.49□□□□□ -1.05
VPS13B-205ENST00000493587 EIF4G2P78344 907 aaKnown RBP eCLIP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms