RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 PRDM11Q9NQV5 511 aa15.72■□□□□ 0.11
COL6A3-212ENST00000491769 SOGA3Q5TF21 947 aa15.72■□□□□ 0.11
COL6A3-212ENST00000491769 SPG7Q9UQ90 795 aa15.72■□□□□ 0.11
COL6A3-212ENST00000491769 NAT10Q9H0A0 1025 aaKnown RBP15.71■□□□□ 0.11
COL6A3-212ENST00000491769 THEMISQ8N1K5 641 aaPredicted RBP15.71■□□□□ 0.11
COL6A3-212ENST00000491769 SIL1Q9H173 461 aa15.71■□□□□ 0.11
COL6A3-212ENST00000491769 IFT57Q9NWB7 429 aa15.71■□□□□ 0.11
COL6A3-212ENST00000491769 MYO6Q9UM54 1294 aa15.71■□□□□ 0.11
COL6A3-212ENST00000491769 TMOD2Q9NZR1 351 aa15.7■□□□□ 0.1
COL6A3-212ENST00000491769 PDE4AP27815 886 aa15.7■□□□□ 0.1
COL6A3-212ENST00000491769 ZNF771Q7L3S4 317 aaPredicted RBP15.7■□□□□ 0.1
COL6A3-212ENST00000491769 NEFHP12036 1026 aa15.7■□□□□ 0.1
COL6A3-212ENST00000491769 NUP133Q8WUM0 1156 aa15.7■□□□□ 0.1
COL6A3-212ENST00000491769 NACAP1Q9BZK3 213 aa15.7■□□□□ 0.1
COL6A3-212ENST00000491769 ZNF76P36508 570 aa15.69■□□□□ 0.1
COL6A3-212ENST00000491769 XPCQ01831 940 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-212ENST00000491769 TMEM87AQ8NBN3 555 aa15.69■□□□□ 0.1
COL6A3-212ENST00000491769 PRDM2Q13029 1718 aa15.69■□□□□ 0.1
COL6A3-212ENST00000491769 TEX35Q5T0J7 233 aa15.69■□□□□ 0.1
COL6A3-212ENST00000491769 SPINK5Q9NQ38 1064 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-212ENST00000491769 ANKRD62A6NC57 917 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 CCDC69A6NI79 296 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 SCLT1Q96NL6 688 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-212ENST00000491769 GNAI3P08754 354 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 MTHFSP49914 203 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 TANGO6Q9C0B7 1094 aa15.68■□□□□ 0.1
COL6A3-212ENST00000491769 CCDC57Q2TAC2 916 aa15.67■□□□□ 0.1
COL6A3-212ENST00000491769 ACBD3Q9H3P7 528 aa15.67■□□□□ 0.1
COL6A3-212ENST00000491769 ZNF530Q6P9A1 599 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-212ENST00000491769 CEBPZQ03701 1054 aaKnown RBP15.67■□□□□ 0.1
COL6A3-212ENST00000491769 FILIP1LQ4L180 1135 aa15.67■□□□□ 0.1
COL6A3-212ENST00000491769 ANKLE2Q86XL3 938 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 RAI14Q9P0K7 980 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 WDR78Q5VTH9 848 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 SSBP05455 408 aaKnown RBP eCLIP15.66■□□□□ 0.1
COL6A3-212ENST00000491769 SMC2O95347 1197 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 ERC1Q8IUD2 1116 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 PRAM1Q96QH2 718 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 FANCD2Q9BXW9 1451 aa15.66■□□□□ 0.1
COL6A3-212ENST00000491769 FMNL2Q96PY5 1086 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 USP5P45974 858 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 CDC45O75419 566 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 SEPT11Q9NVA2 429 aaKnown RBP15.65■□□□□ 0.1
COL6A3-212ENST00000491769 ZNF219Q9P2Y4 722 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-212ENST00000491769 HIP1O00291 1037 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 SMARCE1Q969G3 411 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 CHMP5Q9NZZ3 219 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 FKBP4Q02790 459 aaKnown RBP eCLIP15.65■□□□□ 0.1
COL6A3-212ENST00000491769 PIBF1Q8WXW3 757 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 MROH2BQ7Z745 1585 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 HDGFL1Q5TGJ6 251 aa15.65■□□□□ 0.1
COL6A3-212ENST00000491769 NUCB2P80303 420 aa15.64■□□□□ 0.09
COL6A3-212ENST00000491769 PANK1Q8TE04 598 aa15.64■□□□□ 0.09
COL6A3-212ENST00000491769 PRKAR2BP31323 418 aa15.64■□□□□ 0.09
COL6A3-212ENST00000491769 HSP90B2PQ58FF3 399 aa15.64■□□□□ 0.09
COL6A3-212ENST00000491769 CCDC85AQ96PX6 553 aaPredicted RBP15.64■□□□□ 0.09
COL6A3-212ENST00000491769 TRIM22Q8IYM9 498 aa15.63■□□□□ 0.09
COL6A3-212ENST00000491769 ARGLU1Q9NWB6 273 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-212ENST00000491769 STK38Q15208 465 aa15.63■□□□□ 0.09
COL6A3-212ENST00000491769 STK3Q13188 491 aa15.63■□□□□ 0.09
COL6A3-212ENST00000491769 KINO60870 393 aaKnown RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 ZPR1O75312 459 aa15.62■□□□□ 0.09
COL6A3-212ENST00000491769 ADAMTS2O95450 1211 aa15.62■□□□□ 0.09
COL6A3-212ENST00000491769 TDO2P48775 406 aa15.62■□□□□ 0.09
COL6A3-212ENST00000491769 DESP17661 470 aa15.62■□□□□ 0.09
COL6A3-212ENST00000491769 IGHMBP2P38935 993 aaKnown RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 MAP4K4O95819 1239 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 TRIM21P19474 475 aaKnown RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 DCTN1Q14203 1278 aa15.62■□□□□ 0.09
COL6A3-212ENST00000491769 ZRSR2Q15696 482 aaKnown RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 SEPT7Q16181 437 aaKnown RBP15.62■□□□□ 0.09
COL6A3-212ENST00000491769 PRKRIP1Q9H875 184 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-212ENST00000491769 ARHGAP5Q13017 1502 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 C1orf115Q9H7X2 142 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 LRP2BPQ9P2M1 347 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 ZC3H6P61129 1189 aaKnown RBP15.61■□□□□ 0.09
COL6A3-212ENST00000491769 ZSCAN25Q6NSZ9 544 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 ZNF396Q96N95 335 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-212ENST00000491769 MAP7D2Q96T17 732 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 SLC26A8Q96RN1 970 aa15.61■□□□□ 0.09
COL6A3-212ENST00000491769 GNAI2P04899 355 aa15.6■□□□□ 0.09
COL6A3-212ENST00000491769 SULT6B1Q6IMI4 303 aa15.6■□□□□ 0.09
COL6A3-212ENST00000491769 CRACR2BQ8N4Y2 399 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-212ENST00000491769 DEF6Q9H4E7 631 aa15.6■□□□□ 0.09
COL6A3-212ENST00000491769 C22orf23Q9BZE7 217 aa15.6■□□□□ 0.09
COL6A3-212ENST00000491769 SLC4A2P04920 1241 aa15.6■□□□□ 0.09
COL6A3-212ENST00000491769 STIM1Q13586 685 aa15.59■□□□□ 0.09
COL6A3-212ENST00000491769 TWISTNBQ3B726 338 aaPredicted RBP15.59■□□□□ 0.09
COL6A3-212ENST00000491769 ZNHIT6Q9NWK9 470 aaKnown RBP15.59■□□□□ 0.09
COL6A3-212ENST00000491769 AFAP1Q8N556 730 aa15.59■□□□□ 0.09
COL6A3-212ENST00000491769 PIP4K2AP48426 406 aaPredicted RBP15.59■□□□□ 0.09
COL6A3-212ENST00000491769 CDK19Q9BWU1 502 aa15.59■□□□□ 0.09
COL6A3-212ENST00000491769 HMGB2P26583 209 aaKnown RBP15.59■□□□□ 0.09
COL6A3-212ENST00000491769 ANKRD18AQ8IVF6 992 aa15.59■□□□□ 0.09
COL6A3-212ENST00000491769 WDR70Q9NW82 654 aa15.59■□□□□ 0.09
COL6A3-212ENST00000491769 SSR1P43307 286 aaKnown RBP15.58■□□□□ 0.08
COL6A3-212ENST00000491769 GRM1Q13255 1194 aa15.58■□□□□ 0.08
COL6A3-212ENST00000491769 PNISRQ8TF01 805 aaKnown RBP15.58■□□□□ 0.08
COL6A3-212ENST00000491769 UBAC1Q9BSL1 405 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms