RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 NUDT16Q96DE0 195 aaKnown RBP12.98□□□□□ -0.33
HDAC3-211ENST00000491581 CDK19Q9BWU1 502 aa12.98□□□□□ -0.33
HDAC3-211ENST00000491581 NEUROD1Q13562 356 aa12.97□□□□□ -0.33
HDAC3-211ENST00000491581 L3MBTL2Q969R5 705 aa12.97□□□□□ -0.33
HDAC3-211ENST00000491581 TRPM1Q7Z4N2 1603 aa12.97□□□□□ -0.33
HDAC3-211ENST00000491581 EP400Q96L91 3159 aa12.97□□□□□ -0.33
HDAC3-211ENST00000491581 FAM182BQ5T319 152 aa12.96□□□□□ -0.33
HDAC3-211ENST00000491581 NGDNQ8NEJ9 315 aaKnown RBP12.96□□□□□ -0.33
HDAC3-211ENST00000491581 CCDC9Q9Y3X0 531 aaKnown RBP12.96□□□□□ -0.33
HDAC3-211ENST00000491581 ATAD2Q6PL18 1390 aa12.95□□□□□ -0.34
HDAC3-211ENST00000491581 COL14A1Q05707 1796 aaKnown RBP12.95□□□□□ -0.34
HDAC3-211ENST00000491581 CHRNA2Q15822 529 aa12.95□□□□□ -0.34
HDAC3-211ENST00000491581 ARHGEF10O15013 1369 aa12.94□□□□□ -0.34
HDAC3-211ENST00000491581 CABP2Q9NPB3 220 aa12.94□□□□□ -0.34
HDAC3-211ENST00000491581 BTG4Q9NY30 223 aa12.94□□□□□ -0.34
HDAC3-211ENST00000491581 GPRASP1Q5JY77 1395 aa12.94□□□□□ -0.34
HDAC3-211ENST00000491581 ACEP12821 1306 aa12.93□□□□□ -0.34
HDAC3-211ENST00000491581 SEPT12Q8IYM1 358 aa12.93□□□□□ -0.34
HDAC3-211ENST00000491581 VPS72Q15906 364 aa12.92□□□□□ -0.34
HDAC3-211ENST00000491581 NRKQ7Z2Y5 1582 aa12.92□□□□□ -0.34
HDAC3-211ENST00000491581 DEFB132Q7Z7B7 95 aa12.92□□□□□ -0.34
HDAC3-211ENST00000491581 ZC3H6P61129 1189 aaKnown RBP12.91□□□□□ -0.34
HDAC3-211ENST00000491581 FAM98CQ17RN3 349 aaKnown RBP12.91□□□□□ -0.34
HDAC3-211ENST00000491581 NBPF8Q3BBV2 869 aa12.91□□□□□ -0.34
HDAC3-211ENST00000491581 KIAA0232Q92628 1395 aa12.91□□□□□ -0.34
HDAC3-211ENST00000491581 PPIP5K1Q6PFW1 1433 aa12.9□□□□□ -0.34
HDAC3-211ENST00000491581 A0A0G2JS52 829 aa12.9□□□□□ -0.34
HDAC3-211ENST00000491581 MYT1Q01538 1121 aa12.9□□□□□ -0.34
HDAC3-211ENST00000491581 SRPK2P78362 688 aaKnown RBP12.89□□□□□ -0.35
HDAC3-211ENST00000491581 POLR3AO14802 1390 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-211ENST00000491581 EIF3AQ14152 1382 aaKnown RBP12.89□□□□□ -0.35
HDAC3-211ENST00000491581 CENPJQ9HC77 1338 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-211ENST00000491581 STRN4Q9NRL3 753 aa12.88□□□□□ -0.35
HDAC3-211ENST00000491581 PIK3C2AO00443 1686 aa12.88□□□□□ -0.35
HDAC3-211ENST00000491581 THSD7AQ9UPZ6 1657 aa12.88□□□□□ -0.35
HDAC3-211ENST00000491581 RGPD5Q99666 1765 aa12.87□□□□□ -0.35
HDAC3-211ENST00000491581 LMO7Q8WWI1 1683 aa12.87□□□□□ -0.35
HDAC3-211ENST00000491581 CAMTA1Q9Y6Y1 1673 aa12.87□□□□□ -0.35
HDAC3-211ENST00000491581 STAC3Q96MF2 364 aa12.87□□□□□ -0.35
HDAC3-211ENST00000491581 PRDM11Q9NQV5 511 aa12.87□□□□□ -0.35
HDAC3-211ENST00000491581 ZBTB7CA1YPR0 619 aa12.86□□□□□ -0.35
HDAC3-211ENST00000491581 CABP1Q9NZU7 370 aa12.86□□□□□ -0.35
HDAC3-211ENST00000491581 USP35Q9P2H5 1018 aa12.86□□□□□ -0.35
HDAC3-211ENST00000491581 CCDC61Q9Y6R9 512 aa12.86□□□□□ -0.35
HDAC3-211ENST00000491581 AKAP12Q02952 1782 aa12.86□□□□□ -0.35
HDAC3-211ENST00000491581 TNS1Q9HBL0 1735 aaKnown RBP12.85□□□□□ -0.35
HDAC3-211ENST00000491581 PLEKHG3A1L390 1219 aa12.85□□□□□ -0.35
HDAC3-211ENST00000491581 KRT27Q7Z3Y8 459 aa12.85□□□□□ -0.35
HDAC3-211ENST00000491581 ABTB2Q8N961 1025 aa12.85□□□□□ -0.35
HDAC3-211ENST00000491581 SPATA31A5Q5VU36 1347 aa12.85□□□□□ -0.35
HDAC3-211ENST00000491581 SPATA31A7Q8IWB4 1347 aa12.85□□□□□ -0.35
HDAC3-211ENST00000491581 ONECUT3O60422 494 aaPredicted RBP12.84□□□□□ -0.35
HDAC3-211ENST00000491581 BLMP54132 1417 aaPredicted RBP12.84□□□□□ -0.35
HDAC3-211ENST00000491581 ROCK2O75116 1388 aaKnown RBP12.83□□□□□ -0.36
HDAC3-211ENST00000491581 LARP1Q6PKG0 1096 aaKnown RBP12.83□□□□□ -0.36
HDAC3-211ENST00000491581 USP6P35125 1406 aa12.82□□□□□ -0.36
HDAC3-211ENST00000491581 SOX12O15370 315 aa12.82□□□□□ -0.36
HDAC3-211ENST00000491581 ZRANB1Q9UGI0 708 aa12.82□□□□□ -0.36
HDAC3-211ENST00000491581 SPATA31A1Q5TZJ5 1347 aa12.82□□□□□ -0.36
HDAC3-211ENST00000491581 COL18A1P39060 1754 aa12.81□□□□□ -0.36
HDAC3-211ENST00000491581 RGPD1P0DJD0 1748 aa12.81□□□□□ -0.36
HDAC3-211ENST00000491581 USP19O94966 1318 aa12.81□□□□□ -0.36
HDAC3-211ENST00000491581 SSH2Q76I76 1423 aa12.8□□□□□ -0.36
HDAC3-211ENST00000491581 PSDA5PKW4 1024 aaPredicted RBP12.8□□□□□ -0.36
HDAC3-211ENST00000491581 MON2Q7Z3U7 1717 aa12.79□□□□□ -0.36
HDAC3-211ENST00000491581 SLIT3O75094 1523 aa12.79□□□□□ -0.36
HDAC3-211ENST00000491581 GCP02774 474 aa12.79□□□□□ -0.36
HDAC3-211ENST00000491581 EN1Q05925 392 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-211ENST00000491581 NLRP6P59044 892 aa12.78□□□□□ -0.36
HDAC3-211ENST00000491581 WNK3Q9BYP7 1800 aa12.78□□□□□ -0.36
HDAC3-211ENST00000491581 COL5A2P05997 1499 aaPredicted RBP12.78□□□□□ -0.36
HDAC3-211ENST00000491581 EVA1CP58658 441 aa12.77□□□□□ -0.37
HDAC3-211ENST00000491581 AXIN2Q9Y2T1 843 aa12.77□□□□□ -0.37
HDAC3-211ENST00000491581 EVC2Q86UK5 1308 aa12.77□□□□□ -0.37
HDAC3-211ENST00000491581 CD163L1Q9NR16 1453 aa12.77□□□□□ -0.37
HDAC3-211ENST00000491581 CCDC125Q86Z20 511 aa12.76□□□□□ -0.37
HDAC3-211ENST00000491581 LRRC37A3O60309 1634 aa12.76□□□□□ -0.37
HDAC3-211ENST00000491581 CPDO75976 1380 aa12.75□□□□□ -0.37
HDAC3-211ENST00000491581 TRIM37O94972 964 aa12.75□□□□□ -0.37
HDAC3-211ENST00000491581 EZH2Q15910 746 aaKnown RBP12.75□□□□□ -0.37
HDAC3-211ENST00000491581 TTC21BQ7Z4L5 1316 aa12.75□□□□□ -0.37
HDAC3-211ENST00000491581 NLRP13Q86W25 1043 aa12.75□□□□□ -0.37
HDAC3-211ENST00000491581 PARP4Q9UKK3 1724 aaKnown RBP12.75□□□□□ -0.37
HDAC3-211ENST00000491581 LTN1O94822 1766 aa12.74□□□□□ -0.37
HDAC3-211ENST00000491581 SF3B2Q13435 895 aaKnown RBP12.74□□□□□ -0.37
HDAC3-211ENST00000491581 PTF1AQ7RTS3 328 aa12.74□□□□□ -0.37
HDAC3-211ENST00000491581 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.74□□□□□ -0.37
HDAC3-211ENST00000491581 CARD11Q9BXL7 1154 aa12.74□□□□□ -0.37
HDAC3-211ENST00000491581 NFAT5O94916 1531 aa12.73□□□□□ -0.37
HDAC3-211ENST00000491581 CPSF1Q10570 1443 aaKnown RBP12.73□□□□□ -0.37
HDAC3-211ENST00000491581 TONSLQ96HA7 1378 aa12.73□□□□□ -0.37
HDAC3-211ENST00000491581 SBF2Q86WG5 1849 aa12.73□□□□□ -0.37
HDAC3-211ENST00000491581 NUP188Q5SRE5 1749 aa12.73□□□□□ -0.37
HDAC3-211ENST00000491581 PEAK1Q9H792 1746 aa12.73□□□□□ -0.37
HDAC3-211ENST00000491581 SRCAPQ6ZRS2 3230 aa12.72□□□□□ -0.37
HDAC3-211ENST00000491581 KTN1Q86UP2 1357 aaKnown RBP12.72□□□□□ -0.37
HDAC3-211ENST00000491581 NME9Q86XW9 330 aa12.72□□□□□ -0.37
HDAC3-211ENST00000491581 SLC12A5Q9H2X9 1139 aa12.72□□□□□ -0.37
HDAC3-211ENST00000491581 RREB1Q92766 1687 aa12.72□□□□□ -0.37
HDAC3-211ENST00000491581 TMC1Q8TDI8 760 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms