RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 USP32Q8NFA0 1604 aa18.55■□□□□ 0.56
SMPD4-219ENST00000491128 CDC42BPGQ6DT37 1551 aa18.55■□□□□ 0.56
SMPD4-219ENST00000491128 COG3Q96JB2 828 aa18.55■□□□□ 0.56
SMPD4-219ENST00000491128 U2SURPO15042 1029 aaKnown RBP18.54■□□□□ 0.56
SMPD4-219ENST00000491128 POLKQ9UBT6 870 aa18.54■□□□□ 0.56
SMPD4-219ENST00000491128 RGPD8O14715 1765 aaPredicted RBP18.53■□□□□ 0.56
SMPD4-219ENST00000491128 APAF1O14727 1248 aa18.53■□□□□ 0.56
SMPD4-219ENST00000491128 IRX6P78412 446 aaPredicted RBP18.53■□□□□ 0.56
SMPD4-219ENST00000491128 NEUROD2Q15784 382 aa18.53■□□□□ 0.56
SMPD4-219ENST00000491128 POLR3AO14802 1390 aaPredicted RBP18.53■□□□□ 0.56
SMPD4-219ENST00000491128 U2AF1L5P0DN76 240 aaPredicted RBP18.52■□□□□ 0.56
SMPD4-219ENST00000491128 U2AF1Q01081 240 aaKnown RBP eCLIP18.52■□□□□ 0.56
SMPD4-219ENST00000491128 CFAP53Q96M91 514 aa18.52■□□□□ 0.56
SMPD4-219ENST00000491128 RRP7AQ9Y3A4 280 aaKnown RBP18.52■□□□□ 0.56
SMPD4-219ENST00000491128 USP6P35125 1406 aa18.52■□□□□ 0.56
SMPD4-219ENST00000491128 PHF8Q9UPP1 1060 aa18.51■□□□□ 0.55
SMPD4-219ENST00000491128 NALCNQ8IZF0 1738 aa18.51■□□□□ 0.55
SMPD4-219ENST00000491128 FOXO3O43524 673 aa18.5■□□□□ 0.55
SMPD4-219ENST00000491128 TMEM94Q12767 1356 aa18.5■□□□□ 0.55
SMPD4-219ENST00000491128 ZNF335Q9H4Z2 1342 aaPredicted RBP18.5■□□□□ 0.55
SMPD4-219ENST00000491128 BLMP54132 1417 aaPredicted RBP18.5■□□□□ 0.55
SMPD4-219ENST00000491128 ADGRL3Q9HAR2 1447 aa18.5■□□□□ 0.55
SMPD4-219ENST00000491128 DDX17Q92841 729 aaKnown RBP18.49■□□□□ 0.55
SMPD4-219ENST00000491128 FKBP8Q14318 412 aa18.47■□□□□ 0.55
SMPD4-219ENST00000491128 NLRP6P59044 892 aa18.47■□□□□ 0.55
SMPD4-219ENST00000491128 PSME1Q06323 249 aa18.46■□□□□ 0.55
SMPD4-219ENST00000491128 ABTB2Q8N961 1025 aa18.46■□□□□ 0.55
SMPD4-219ENST00000491128 C19orf44Q9H6X5 657 aa18.46■□□□□ 0.55
SMPD4-219ENST00000491128 TOPAZ1Q8N9V7 1692 aa18.46■□□□□ 0.55
SMPD4-219ENST00000491128 LMOD2Q6P5Q4 547 aa18.45■□□□□ 0.54
SMPD4-219ENST00000491128 DIAPH1O60610 1272 aaKnown RBP18.45■□□□□ 0.54
SMPD4-219ENST00000491128 KIF20BQ96Q89 1820 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 ITSN1Q15811 1721 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 HMOX1P09601 288 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 SSH2Q76I76 1423 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 ANKARQ7Z5J8 1434 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 MON2Q7Z3U7 1717 aa18.44■□□□□ 0.54
SMPD4-219ENST00000491128 ATF3P18847 181 aa18.43■□□□□ 0.54
SMPD4-219ENST00000491128 NUDCQ9Y266 331 aa18.43■□□□□ 0.54
SMPD4-219ENST00000491128 STRCP1A6NGW2 1772 aa18.43■□□□□ 0.54
SMPD4-219ENST00000491128 AKAP12Q02952 1782 aa18.43■□□□□ 0.54
SMPD4-219ENST00000491128 FMN2Q9NZ56 1722 aa18.43■□□□□ 0.54
SMPD4-219ENST00000491128 TCP11L2Q8N4U5 519 aa18.42■□□□□ 0.54
SMPD4-219ENST00000491128 SPINK5Q9NQ38 1064 aaPredicted RBP18.42■□□□□ 0.54
SMPD4-219ENST00000491128 HSP90AB2PQ58FF8 381 aa18.41■□□□□ 0.54
SMPD4-219ENST00000491128 SHPRHQ149N8 1683 aa18.41■□□□□ 0.54
SMPD4-219ENST00000491128 ZBTB7CA1YPR0 619 aa18.41■□□□□ 0.54
SMPD4-219ENST00000491128 STRCQ7RTU9 1775 aa18.41■□□□□ 0.54
SMPD4-219ENST00000491128 NWD1Q149M9 1564 aa18.4■□□□□ 0.54
SMPD4-219ENST00000491128 RUNDC1Q96C34 613 aa18.4■□□□□ 0.54
SMPD4-219ENST00000491128 OVOS2A0A0J9YW53 1432 aa18.39■□□□□ 0.54
SMPD4-219ENST00000491128 OVOS2Q6IE36 1432 aa18.39■□□□□ 0.54
SMPD4-219ENST00000491128 COL3A1P02461 1466 aaPredicted RBP18.39■□□□□ 0.53
SMPD4-219ENST00000491128 TTC21AQ8NDW8 1320 aa18.39■□□□□ 0.53
SMPD4-219ENST00000491128 PNPLA6Q8IY17 1366 aa18.38■□□□□ 0.53
SMPD4-219ENST00000491128 ANKRD26Q9UPS8 1709 aa18.38■□□□□ 0.53
SMPD4-219ENST00000491128 SMG6Q86US8 1419 aaKnown RBP18.38■□□□□ 0.53
SMPD4-219ENST00000491128 NRKQ7Z2Y5 1582 aa18.38■□□□□ 0.53
SMPD4-219ENST00000491128 MAP3K19Q56UN5 1328 aa18.38■□□□□ 0.53
SMPD4-219ENST00000491128 IL13P35225 146 aa18.37■□□□□ 0.53
SMPD4-219ENST00000491128 C1orf167Q5SNV9 1468 aa18.37■□□□□ 0.53
SMPD4-219ENST00000491128 MAP2P11137 1827 aaKnown RBP18.36■□□□□ 0.53
SMPD4-219ENST00000491128 NEFLP07196 543 aa18.36■□□□□ 0.53
SMPD4-219ENST00000491128 AATKQ6ZMQ8 1374 aa18.36■□□□□ 0.53
SMPD4-219ENST00000491128 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
SMPD4-219ENST00000491128 PLEKHF1Q96S99 279 aa18.36■□□□□ 0.53
SMPD4-219ENST00000491128 INSRP06213 1382 aa18.35■□□□□ 0.53
SMPD4-219ENST00000491128 PRKAR2BP31323 418 aa18.35■□□□□ 0.53
SMPD4-219ENST00000491128 EIF4A2Q14240 407 aaKnown RBP18.35■□□□□ 0.53
SMPD4-219ENST00000491128 AEBP1Q8IUX7 1158 aa18.35■□□□□ 0.53
SMPD4-219ENST00000491128 WWC1Q8IX03 1113 aa18.35■□□□□ 0.53
SMPD4-219ENST00000491128 LTV1Q96GA3 475 aaPredicted RBP18.35■□□□□ 0.53
SMPD4-219ENST00000491128 PHACTR3Q96KR7 559 aa18.35■□□□□ 0.53
SMPD4-219ENST00000491128 ZNF521Q96K83 1311 aa18.34■□□□□ 0.53
SMPD4-219ENST00000491128 AMPHP49418 695 aa18.34■□□□□ 0.53
SMPD4-219ENST00000491128 GOLGA2Q08379 1002 aa18.34■□□□□ 0.53
SMPD4-219ENST00000491128 MYT1Q01538 1121 aa18.33■□□□□ 0.52
SMPD4-219ENST00000491128 CADPS2Q86UW7 1296 aa18.33■□□□□ 0.52
SMPD4-219ENST00000491128 PIK3C2AO00443 1686 aa18.33■□□□□ 0.52
SMPD4-219ENST00000491128 MSH6P52701 1360 aa18.32■□□□□ 0.52
SMPD4-219ENST00000491128 USP31Q70CQ4 1352 aa18.32■□□□□ 0.52
SMPD4-219ENST00000491128 MST1RQ04912 1400 aa18.32■□□□□ 0.52
SMPD4-219ENST00000491128 MAPK8IP3Q9UPT6 1336 aa18.32■□□□□ 0.52
SMPD4-219ENST00000491128 PDE3BQ13370 1112 aa18.31■□□□□ 0.52
SMPD4-219ENST00000491128 DUSP27Q5VZP5 1158 aa18.31■□□□□ 0.52
SMPD4-219ENST00000491128 RSPH6AQ9H0K4 717 aa18.31■□□□□ 0.52
SMPD4-219ENST00000491128 SULT6B1Q6IMI4 303 aa18.3■□□□□ 0.52
SMPD4-219ENST00000491128 LRRC7Q96NW7 1537 aa18.3■□□□□ 0.52
SMPD4-219ENST00000491128 TMPOP42166 694 aaKnown RBP18.3■□□□□ 0.52
SMPD4-219ENST00000491128 CABLES1Q8TDN4 633 aa18.3■□□□□ 0.52
SMPD4-219ENST00000491128 SLFN5Q08AF3 891 aa18.29■□□□□ 0.52
SMPD4-219ENST00000491128 RIPK4P57078 832 aa18.29■□□□□ 0.52
SMPD4-219ENST00000491128 RCAN3Q9UKA8 241 aa18.29■□□□□ 0.52
SMPD4-219ENST00000491128 CDK12Q9NYV4 1490 aaPredicted RBP18.28■□□□□ 0.52
SMPD4-219ENST00000491128 PLIN1O60240 522 aa18.28■□□□□ 0.52
SMPD4-219ENST00000491128 FCHSD2O94868 740 aa18.28■□□□□ 0.52
SMPD4-219ENST00000491128 THUMPD2Q9BTF0 503 aaKnown RBP18.27■□□□□ 0.52
SMPD4-219ENST00000491128 BRINP3Q76B58 766 aa18.27■□□□□ 0.51
SMPD4-219ENST00000491128 PEAK1Q9H792 1746 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms