RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 GRIPAP1Q4V328 841 aa10.61□□□□□ -0.71
PRPF40A-210ENST00000489741 REPIN1Q9BWE0 567 aaKnown RBP10.61□□□□□ -0.71
PRPF40A-210ENST00000489741 NEO1Q92859 1461 aa10.61□□□□□ -0.71
PRPF40A-210ENST00000489741 RAPGEF6Q8TEU7 1601 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 KDM4AO75164 1064 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 RGS20O76081 388 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 RANGAP1P46060 587 aaPredicted RBP10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 MORN1Q5T089 497 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 PPP1R18Q6NYC8 613 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 GIGYF2Q6Y7W6 1299 aaKnown RBP10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 SCUBE3Q8IX30 993 aa10.6□□□□□ -0.71
PRPF40A-210ENST00000489741 SSTR3P32745 418 aaPredicted RBP10.58□□□□□ -0.72
PRPF40A-210ENST00000489741 PARP9Q8IXQ6 854 aa10.58□□□□□ -0.72
PRPF40A-210ENST00000489741 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.58□□□□□ -0.72
PRPF40A-210ENST00000489741 ADH1BP00325 375 aa10.57□□□□□ -0.72
PRPF40A-210ENST00000489741 USP46P62068 366 aa10.57□□□□□ -0.72
PRPF40A-210ENST00000489741 NUTM1Q86Y26 1132 aa10.57□□□□□ -0.72
PRPF40A-210ENST00000489741 SLC27A5Q9Y2P5 690 aa10.57□□□□□ -0.72
PRPF40A-210ENST00000489741 HECW2Q9P2P5 1572 aa10.56□□□□□ -0.72
PRPF40A-210ENST00000489741 SPSB2Q99619 263 aa10.55□□□□□ -0.72
PRPF40A-210ENST00000489741 AKNAQ7Z591 1439 aa10.55□□□□□ -0.72
PRPF40A-210ENST00000489741 EFCAB5A4FU69 1503 aa10.54□□□□□ -0.72
PRPF40A-210ENST00000489741 S1PR4O95977 384 aa10.54□□□□□ -0.72
PRPF40A-210ENST00000489741 PDE4DQ08499 809 aa10.54□□□□□ -0.72
PRPF40A-210ENST00000489741 KIF21BO75037 1637 aa10.54□□□□□ -0.72
PRPF40A-210ENST00000489741 FMNL1O95466 1100 aaPredicted RBP10.53□□□□□ -0.72
PRPF40A-210ENST00000489741 DENND4BO75064 1496 aaPredicted RBP10.53□□□□□ -0.72
PRPF40A-210ENST00000489741 PTPRMP28827 1452 aa10.53□□□□□ -0.72
PRPF40A-210ENST00000489741 FRMPD1Q5SYB0 1578 aa10.52□□□□□ -0.72
PRPF40A-210ENST00000489741 HOXA2O43364 376 aa10.52□□□□□ -0.73
PRPF40A-210ENST00000489741 Q3C1V9 767 aa10.52□□□□□ -0.73
PRPF40A-210ENST00000489741 BEGAINQ9BUH8 593 aa10.52□□□□□ -0.73
PRPF40A-210ENST00000489741 SLC6A16Q9GZN6 736 aa10.52□□□□□ -0.73
PRPF40A-210ENST00000489741 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.52□□□□□ -0.73
PRPF40A-210ENST00000489741 ADAMTSL3P82987 1691 aa10.51□□□□□ -0.73
PRPF40A-210ENST00000489741 FANCAO15360 1455 aa10.51□□□□□ -0.73
PRPF40A-210ENST00000489741 UBTFP17480 764 aaKnown RBP10.51□□□□□ -0.73
PRPF40A-210ENST00000489741 HLA-CQ95604 372 aa10.51□□□□□ -0.73
PRPF40A-210ENST00000489741 PLCH2O75038 1416 aa10.5□□□□□ -0.73
PRPF40A-210ENST00000489741 RNF223E7ERA6 249 aa10.5□□□□□ -0.73
PRPF40A-210ENST00000489741 THAP11Q96EK4 314 aa10.5□□□□□ -0.73
PRPF40A-210ENST00000489741 ARHGAP35Q9NRY4 1499 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 MS4A1P11836 297 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 BRICD5Q6PL45 260 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 RNF19BQ6ZMZ0 732 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 PRKD2Q9BZL6 878 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 SALL2Q9Y467 1007 aaPredicted RBP10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 ARID4BQ4LE39 1312 aaPredicted RBP10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 FMN1Q68DA7 1419 aa10.49□□□□□ -0.73
PRPF40A-210ENST00000489741 CDK13Q14004 1512 aaKnown RBP10.48□□□□□ -0.73
PRPF40A-210ENST00000489741 GUCA2AQ02747 115 aa10.48□□□□□ -0.73
PRPF40A-210ENST00000489741 MAGI2Q86UL8 1455 aa10.48□□□□□ -0.73
PRPF40A-210ENST00000489741 PPEF1O14829 653 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 EFCAB2Q5VUJ9 269 aa10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 SPIRE2Q8WWL2 714 aa10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 CDK11AQ9UQ88 783 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 SCAPERQ9BY12 1400 aa10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 YEATS2Q9ULM3 1422 aa10.47□□□□□ -0.73
PRPF40A-210ENST00000489741 ANKLE1Q8NAG6 615 aa10.46□□□□□ -0.73
PRPF40A-210ENST00000489741 ZMYM4Q5VZL5 1548 aa10.46□□□□□ -0.74
PRPF40A-210ENST00000489741 TTC37Q6PGP7 1564 aa10.46□□□□□ -0.74
PRPF40A-210ENST00000489741 BCORL1Q5H9F3 1711 aa10.46□□□□□ -0.74
PRPF40A-210ENST00000489741 ARHGEF40Q8TER5 1519 aa10.45□□□□□ -0.74
PRPF40A-210ENST00000489741 FAM160A2Q8N612 972 aaPredicted RBP10.45□□□□□ -0.74
PRPF40A-210ENST00000489741 ATP1B4Q9UN42 357 aaPredicted RBP10.45□□□□□ -0.74
PRPF40A-210ENST00000489741 RICTORQ6R327 1708 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 POGZQ7Z3K3 1410 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 FDX1P10109 184 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 MSS51Q4VC12 460 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 TBC1D2Q9BYX2 928 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 PRDM9Q9NQV7 894 aa10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 V9GY48 417 aaPredicted RBP10.44□□□□□ -0.74
PRPF40A-210ENST00000489741 LMTK3Q96Q04 1460 aa10.43□□□□□ -0.74
PRPF40A-210ENST00000489741 TROQ12816 1431 aaPredicted RBP10.43□□□□□ -0.74
PRPF40A-210ENST00000489741 MOXD2PA6NHM9 499 aa10.43□□□□□ -0.74
PRPF40A-210ENST00000489741 DIXDC1Q155Q3 683 aa10.43□□□□□ -0.74
PRPF40A-210ENST00000489741 USB1Q9BQ65 265 aaKnown RBP10.43□□□□□ -0.74
PRPF40A-210ENST00000489741 NDUFV2P19404 249 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 AFAP1Q8N556 730 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 FBXO41Q8TF61 875 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 MADDQ8WXG6 1647 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 CFAP74Q9C0B2 1584 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 ZFYVE16Q7Z3T8 1539 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 ATP10AO60312 1499 aa10.42□□□□□ -0.74
PRPF40A-210ENST00000489741 HECW1Q76N89 1606 aa10.41□□□□□ -0.74
PRPF40A-210ENST00000489741 C6orf229H3BNL8 230 aa10.41□□□□□ -0.74
PRPF40A-210ENST00000489741 SLC19A1P41440 591 aa10.41□□□□□ -0.74
PRPF40A-210ENST00000489741 IRX2Q9BZI1 471 aaPredicted RBP10.41□□□□□ -0.74
PRPF40A-210ENST00000489741 FCF1Q9Y324 198 aaKnown RBP10.41□□□□□ -0.74
PRPF40A-210ENST00000489741 PCF11O94913 1555 aaKnown RBP10.4□□□□□ -0.74
PRPF40A-210ENST00000489741 SYMPKQ92797 1274 aaKnown RBP10.4□□□□□ -0.74
PRPF40A-210ENST00000489741 PCDHGC3Q9UN70 934 aa10.4□□□□□ -0.74
PRPF40A-210ENST00000489741 SIGLEC1Q9BZZ2 1709 aa10.39□□□□□ -0.75
PRPF40A-210ENST00000489741 MLECQ14165 292 aa10.39□□□□□ -0.75
PRPF40A-210ENST00000489741 TPRNQ4KMQ1 711 aa10.39□□□□□ -0.75
PRPF40A-210ENST00000489741 GPBP1L1Q9HC44 474 aaPredicted RBP10.39□□□□□ -0.75
PRPF40A-210ENST00000489741 CASKIN1Q8WXD9 1431 aa10.39□□□□□ -0.75
PRPF40A-210ENST00000489741 HSPA2P54652 639 aa10.38□□□□□ -0.75
PRPF40A-210ENST00000489741 C9orf84Q5VXU9 1444 aa10.38□□□□□ -0.75
PRPF40A-210ENST00000489741 ZNF518AQ6AHZ1 1483 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms