RNA–Protein interactions for RNA: ENST00000489048.1

NEB-215, Transcript of nebulin, humanhuman

TSL 1 (best)

Gene NEB, Length 2,738 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-215ENST00000489048 NCOA3Q9Y6Q9 1424 aa13.9□□□□□ -0.18
NEB-215ENST00000489048 U2AF1L5P0DN76 240 aaPredicted RBP13.9□□□□□ -0.18
NEB-215ENST00000489048 U2AF1Q01081 240 aaKnown RBP eCLIP13.9□□□□□ -0.18
NEB-215ENST00000489048 POGZQ7Z3K3 1410 aa13.89□□□□□ -0.19
NEB-215ENST00000489048 CHMP5Q9NZZ3 219 aa13.89□□□□□ -0.19
NEB-215ENST00000489048 TRIM27P14373 513 aa13.89□□□□□ -0.19
NEB-215ENST00000489048 TMEM132EQ6IEE7 984 aa13.89□□□□□ -0.19
NEB-215ENST00000489048 SOCS7O14512 581 aa13.88□□□□□ -0.19
NEB-215ENST00000489048 ZFYVE9O95405 1425 aa13.88□□□□□ -0.19
NEB-215ENST00000489048 SIGLEC1Q9BZZ2 1709 aa13.88□□□□□ -0.19
NEB-215ENST00000489048 CHGAP10645 457 aaKnown RBP13.88□□□□□ -0.19
NEB-215ENST00000489048 TRHP20396 242 aaPredicted RBP13.88□□□□□ -0.19
NEB-215ENST00000489048 TMPOP42166 694 aaKnown RBP13.88□□□□□ -0.19
NEB-215ENST00000489048 ATF7IPQ6VMQ6 1270 aa13.88□□□□□ -0.19
NEB-215ENST00000489048 TRIM35Q9UPQ4 493 aa13.88□□□□□ -0.19
NEB-215ENST00000489048 SMC4Q9NTJ3 1288 aa13.87□□□□□ -0.19
NEB-215ENST00000489048 CLTCQ00610 1675 aaKnown RBP13.87□□□□□ -0.19
NEB-215ENST00000489048 EXOSC9Q06265 439 aaKnown RBP13.87□□□□□ -0.19
NEB-215ENST00000489048 CDC42BPGQ6DT37 1551 aa13.87□□□□□ -0.19
NEB-215ENST00000489048 SSH1Q8WYL5 1049 aa13.86□□□□□ -0.19
NEB-215ENST00000489048 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
NEB-215ENST00000489048 A0A1W2PP64 1363 aa13.86□□□□□ -0.19
NEB-215ENST00000489048 DDIT3P35638 169 aa13.85□□□□□ -0.19
NEB-215ENST00000489048 TSR2Q969E8 191 aaKnown RBP13.85□□□□□ -0.19
NEB-215ENST00000489048 GOLGA6L3A6NEY3 463 aa13.85□□□□□ -0.19
NEB-215ENST00000489048 VGFO15240 615 aaPredicted RBP13.85□□□□□ -0.19
NEB-215ENST00000489048 RBM25P49756 843 aaKnown RBP13.85□□□□□ -0.19
NEB-215ENST00000489048 ZBTB40Q9NUA8 1239 aa13.85□□□□□ -0.19
NEB-215ENST00000489048 KIF16BQ96L93 1317 aa13.85□□□□□ -0.19
NEB-215ENST00000489048 SNX21Q969T3 373 aa13.84□□□□□ -0.19
NEB-215ENST00000489048 RRAGDQ9NQL2 400 aaPredicted RBP13.84□□□□□ -0.19
NEB-215ENST00000489048 PNPLA6Q8IY17 1366 aa13.84□□□□□ -0.19
NEB-215ENST00000489048 ARHGAP31Q2M1Z3 1444 aa13.84□□□□□ -0.19
NEB-215ENST00000489048 XRCC6P12956 609 aaKnown RBP eCLIP13.84□□□□□ -0.19
NEB-215ENST00000489048 MFAP1P55081 439 aaKnown RBP13.84□□□□□ -0.19
NEB-215ENST00000489048 BRPF1P55201 1214 aaPredicted RBP13.84□□□□□ -0.19
NEB-215ENST00000489048 ALDH1L2Q3SY69 923 aa13.84□□□□□ -0.19
NEB-215ENST00000489048 ITPRIPQ8IWB1 547 aa13.84□□□□□ -0.19
NEB-215ENST00000489048 CD163L1Q9NR16 1453 aa13.83□□□□□ -0.2
NEB-215ENST00000489048 PPIP5K1Q6PFW1 1433 aa13.83□□□□□ -0.2
NEB-215ENST00000489048 ATAD2Q6PL18 1390 aa13.83□□□□□ -0.2
NEB-215ENST00000489048 ISY1Q9ULR0 285 aaKnown RBP13.83□□□□□ -0.2
NEB-215ENST00000489048 NOB1Q9ULX3 412 aaKnown RBP13.83□□□□□ -0.2
NEB-215ENST00000489048 NUCB1Q02818 461 aa13.83□□□□□ -0.2
NEB-215ENST00000489048 HSCBQ8IWL3 235 aa13.83□□□□□ -0.2
NEB-215ENST00000489048 DDX11L8A8MPP1 907 aa13.82□□□□□ -0.2
NEB-215ENST00000489048 IPO8O15397 1037 aaKnown RBP13.82□□□□□ -0.2
NEB-215ENST00000489048 TMEM57Q8N5G2 664 aa13.82□□□□□ -0.2
NEB-215ENST00000489048 CABP2Q9NPB3 220 aa13.82□□□□□ -0.2
NEB-215ENST00000489048 PTPRMP28827 1452 aa13.82□□□□□ -0.2
NEB-215ENST00000489048 PNNQ9H307 717 aaKnown RBP13.82□□□□□ -0.2
NEB-215ENST00000489048 TRAK2O60296 914 aa13.81□□□□□ -0.2
NEB-215ENST00000489048 ZNF428Q96B54 188 aa13.81□□□□□ -0.2
NEB-215ENST00000489048 REREQ9P2R6 1566 aa13.81□□□□□ -0.2
NEB-215ENST00000489048 CFAP65Q6ZU64 1925 aaKnown RBP13.81□□□□□ -0.2
NEB-215ENST00000489048 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
NEB-215ENST00000489048 PIK3R4Q99570 1358 aa13.8□□□□□ -0.2
NEB-215ENST00000489048 MRE11P49959 708 aa13.79□□□□□ -0.2
NEB-215ENST00000489048 U2SURPO15042 1029 aaKnown RBP13.79□□□□□ -0.2
NEB-215ENST00000489048 GGT6Q6P531 493 aa13.79□□□□□ -0.2
NEB-215ENST00000489048 KIF20BQ96Q89 1820 aa13.79□□□□□ -0.2
NEB-215ENST00000489048 DIP2BQ9P265 1576 aa13.79□□□□□ -0.2
NEB-215ENST00000489048 FYB1O15117 783 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 RIPK4P57078 832 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 BMP2KLQ5H9B9 411 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 PTCH1Q13635 1447 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 FAM135BQ49AJ0 1406 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 SPRYD3Q8NCJ5 442 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 PPP6R1Q9UPN7 881 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 LRRC7Q96NW7 1537 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 LMTK3Q96Q04 1460 aa13.78□□□□□ -0.2
NEB-215ENST00000489048 CHD1LQ86WJ1 897 aa13.77□□□□□ -0.2
NEB-215ENST00000489048 GGNBP2Q9H3C7 697 aa13.77□□□□□ -0.2
NEB-215ENST00000489048 TERF2IPQ9NYB0 399 aa13.77□□□□□ -0.2
NEB-215ENST00000489048 CLCN1P35523 988 aa13.77□□□□□ -0.21
NEB-215ENST00000489048 DIAPH1O60610 1272 aaKnown RBP13.77□□□□□ -0.21
NEB-215ENST00000489048 UBE2Q2Q8WVN8 375 aa13.77□□□□□ -0.21
NEB-215ENST00000489048 CHMP4BQ9H444 224 aaKnown RBP13.77□□□□□ -0.21
NEB-215ENST00000489048 DIP2CQ9Y2E4 1556 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 FCHSD2O94868 740 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 PTMSP20962 102 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 ARHGAP45Q92619 1136 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 GCC1Q96CN9 775 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 TMEM131LA2VDJ0 1609 aa13.76□□□□□ -0.21
NEB-215ENST00000489048 ARHGEF40Q8TER5 1519 aa13.75□□□□□ -0.21
NEB-215ENST00000489048 NEO1Q92859 1461 aa13.75□□□□□ -0.21
NEB-215ENST00000489048 SRPK2P78362 688 aaKnown RBP13.75□□□□□ -0.21
NEB-215ENST00000489048 RAB3GAP1Q15042 981 aa13.75□□□□□ -0.21
NEB-215ENST00000489048 PANK2Q9BZ23 570 aa13.75□□□□□ -0.21
NEB-215ENST00000489048 KIF2CQ99661 725 aa13.74□□□□□ -0.21
NEB-215ENST00000489048 SLC52A1Q9NWF4 448 aa13.74□□□□□ -0.21
NEB-215ENST00000489048 YTHDC2Q9H6S0 1430 aaKnown RBP13.74□□□□□ -0.21
NEB-215ENST00000489048 EIF5BO60841 1220 aaKnown RBP13.74□□□□□ -0.21
NEB-215ENST00000489048 CYB5RLQ6IPT4 315 aa13.74□□□□□ -0.21
NEB-215ENST00000489048 GRPEL1Q9HAV7 217 aa13.74□□□□□ -0.21
NEB-215ENST00000489048 ZBTB7BO15156 539 aaPredicted RBP13.73□□□□□ -0.21
NEB-215ENST00000489048 LNPKQ9C0E8 428 aa13.73□□□□□ -0.21
NEB-215ENST00000489048 GZF1Q9H116 711 aaPredicted RBP13.73□□□□□ -0.21
NEB-215ENST00000489048 TNPO1Q92973 898 aaKnown RBP13.73□□□□□ -0.21
NEB-215ENST00000489048 IDI1Q13907 227 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms