RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 FAM187AA6NFU0 413 aa11□□□□□ -0.65
PTPN4-212ENST00000488896 WNT7AO00755 349 aa11□□□□□ -0.65
PTPN4-212ENST00000488896 F12P00748 615 aaPredicted RBP11□□□□□ -0.65
PTPN4-212ENST00000488896 MRGPRX2Q96LB1 330 aa11□□□□□ -0.65
PTPN4-212ENST00000488896 TTC24A2A3L6 582 aaPredicted RBP10.99□□□□□ -0.65
PTPN4-212ENST00000488896 WNT7BP56706 349 aa10.99□□□□□ -0.65
PTPN4-212ENST00000488896 PPP2R2DQ66LE6 453 aa10.99□□□□□ -0.65
PTPN4-212ENST00000488896 LRRN4Q8WUT4 740 aa10.99□□□□□ -0.65
PTPN4-212ENST00000488896 GOPCQ9HD26 462 aa10.99□□□□□ -0.65
PTPN4-212ENST00000488896 SH3BP2P78314 561 aa10.98□□□□□ -0.65
PTPN4-212ENST00000488896 PKDCCQ504Y2 493 aa10.98□□□□□ -0.65
PTPN4-212ENST00000488896 RFC5P40937 340 aa10.97□□□□□ -0.65
PTPN4-212ENST00000488896 ZNF511Q8NB15 262 aa10.96□□□□□ -0.65
PTPN4-212ENST00000488896 EHBP1Q8NDI1 1231 aa10.96□□□□□ -0.65
PTPN4-212ENST00000488896 TOR4AQ9NXH8 423 aa10.95□□□□□ -0.66
PTPN4-212ENST00000488896 TRAF7Q6Q0C0 670 aa10.94□□□□□ -0.66
PTPN4-212ENST00000488896 SNIP1Q8TAD8 396 aaKnown RBP10.94□□□□□ -0.66
PTPN4-212ENST00000488896 AGERQ15109 404 aa10.93□□□□□ -0.66
PTPN4-212ENST00000488896 J3QL48 77 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 LCE2BO14633 110 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 DGAT1O75907 488 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 USP17L8P0C7I0 530 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 NR6A1Q15406 480 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 FOXJ1Q92949 421 aa10.92□□□□□ -0.66
PTPN4-212ENST00000488896 ALDH1A1P00352 501 aa10.91□□□□□ -0.66
PTPN4-212ENST00000488896 ARMC2Q8NEN0 867 aa10.89□□□□□ -0.67
PTPN4-212ENST00000488896 HMX1Q9NP08 348 aaPredicted RBP10.89□□□□□ -0.67
PTPN4-212ENST00000488896 SMPD1P17405 629 aa10.88□□□□□ -0.67
PTPN4-212ENST00000488896 MYT1Q01538 1121 aa10.88□□□□□ -0.67
PTPN4-212ENST00000488896 TMEM259Q4ZIN3 620 aa10.88□□□□□ -0.67
PTPN4-212ENST00000488896 EPS8L1Q8TE68 723 aa10.88□□□□□ -0.67
PTPN4-212ENST00000488896 NBPF14Q5TI25 921 aa10.87□□□□□ -0.67
PTPN4-212ENST00000488896 TLL2Q9Y6L7 1015 aa10.87□□□□□ -0.67
PTPN4-212ENST00000488896 ST8SIA5O15466 376 aa10.86□□□□□ -0.67
PTPN4-212ENST00000488896 SIAH2O43255 324 aa10.86□□□□□ -0.67
PTPN4-212ENST00000488896 VARSP26640 1264 aaKnown RBP10.86□□□□□ -0.67
PTPN4-212ENST00000488896 MAGEB6P1A0A0J9YX57 407 aa10.85□□□□□ -0.67
PTPN4-212ENST00000488896 ARID5BQ14865 1188 aa10.85□□□□□ -0.67
PTPN4-212ENST00000488896 C4orf48Q5BLP8 95 aa10.85□□□□□ -0.67
PTPN4-212ENST00000488896 CARD14Q9BXL6 1004 aa10.85□□□□□ -0.67
PTPN4-212ENST00000488896 WASF2Q9Y6W5 498 aa10.85□□□□□ -0.67
PTPN4-212ENST00000488896 BPHLQ86WA6 291 aaPredicted RBP10.84□□□□□ -0.67
PTPN4-212ENST00000488896 FAM174AQ8TBP5 190 aa10.84□□□□□ -0.67
PTPN4-212ENST00000488896 HPS1Q92902 700 aa10.84□□□□□ -0.67
PTPN4-212ENST00000488896 FKBPLQ9UIM3 349 aa10.84□□□□□ -0.67
PTPN4-212ENST00000488896 SH3BP5LQ7L8J4 393 aa10.81□□□□□ -0.68
PTPN4-212ENST00000488896 AXIN1O15169 862 aa10.8□□□□□ -0.68
PTPN4-212ENST00000488896 AAASQ9NRG9 546 aa10.8□□□□□ -0.68
PTPN4-212ENST00000488896 GPKOWQ92917 476 aaPredicted RBP eCLIP10.79□□□□□ -0.68
PTPN4-212ENST00000488896 ARHGAP9Q9BRR9 750 aa10.79□□□□□ -0.68
PTPN4-212ENST00000488896 AVPP01185 164 aa10.78□□□□□ -0.68
PTPN4-212ENST00000488896 SH3RF1Q7Z6J0 888 aa10.78□□□□□ -0.68
PTPN4-212ENST00000488896 PNMA1Q8ND90 353 aa10.78□□□□□ -0.68
PTPN4-212ENST00000488896 TRIM34Q9BYJ4 488 aa10.78□□□□□ -0.68
PTPN4-212ENST00000488896 SNRKQ9NRH2 765 aa10.78□□□□□ -0.68
PTPN4-212ENST00000488896 PDXDC2PQ6P474 469 aa10.77□□□□□ -0.69
PTPN4-212ENST00000488896 DACH1Q9UI36 760 aa10.77□□□□□ -0.69
PTPN4-212ENST00000488896 ZBTB33Q86T24 672 aa10.76□□□□□ -0.69
PTPN4-212ENST00000488896 PTK2Q05397 1052 aa10.75□□□□□ -0.69
PTPN4-212ENST00000488896 NNTQ13423 1086 aa10.75□□□□□ -0.69
PTPN4-212ENST00000488896 CTC1Q2NKJ3 1217 aa10.75□□□□□ -0.69
PTPN4-212ENST00000488896 BANK1Q8NDB2 785 aa10.75□□□□□ -0.69
PTPN4-212ENST00000488896 ZC3H4Q9UPT8 1303 aaKnown RBP10.75□□□□□ -0.69
PTPN4-212ENST00000488896 ADH1CP00326 375 aa10.74□□□□□ -0.69
PTPN4-212ENST00000488896 ERFEQ4G0M1 354 aa10.74□□□□□ -0.69
PTPN4-212ENST00000488896 ZNF787Q6DD87 383 aa10.74□□□□□ -0.69
PTPN4-212ENST00000488896 VASH1Q7L8A9 365 aaPredicted RBP10.74□□□□□ -0.69
PTPN4-212ENST00000488896 MTMR14Q8NCE2 650 aa10.74□□□□□ -0.69
PTPN4-212ENST00000488896 GJD4Q96KN9 370 aaPredicted RBP10.74□□□□□ -0.69
PTPN4-212ENST00000488896 C1QTNF2Q9BXJ5 285 aa10.74□□□□□ -0.69
PTPN4-212ENST00000488896 CRIPAKQ8N1N5 446 aa10.73□□□□□ -0.69
PTPN4-212ENST00000488896 CDK15Q96Q40 435 aa10.73□□□□□ -0.69
PTPN4-212ENST00000488896 MPNDQ8N594 471 aa10.72□□□□□ -0.69
PTPN4-212ENST00000488896 OCSTAMPQ9BR26 566 aa10.72□□□□□ -0.69
PTPN4-212ENST00000488896 POTECB2RU33 542 aa10.71□□□□□ -0.69
PTPN4-212ENST00000488896 FSHRP23945 695 aa10.71□□□□□ -0.69
PTPN4-212ENST00000488896 SMCPP49901 116 aaPredicted RBP10.71□□□□□ -0.69
PTPN4-212ENST00000488896 ADAM32Q8TC27 787 aa10.71□□□□□ -0.69
PTPN4-212ENST00000488896 CAPN5O15484 640 aaPredicted RBP10.7□□□□□ -0.7
PTPN4-212ENST00000488896 NR3C2P08235 984 aa10.7□□□□□ -0.7
PTPN4-212ENST00000488896 GRM5P41594 1212 aa10.7□□□□□ -0.7
PTPN4-212ENST00000488896 SLC10A4Q96EP9 437 aa10.7□□□□□ -0.7
PTPN4-212ENST00000488896 WDR4P57081 412 aaKnown RBP10.69□□□□□ -0.7
PTPN4-212ENST00000488896 TRMT44Q8IYL2 757 aaKnown RBP10.69□□□□□ -0.7
PTPN4-212ENST00000488896 GPSM3Q9Y4H4 160 aa10.68□□□□□ -0.7
PTPN4-212ENST00000488896 BMP1P13497 986 aa10.67□□□□□ -0.7
PTPN4-212ENST00000488896 NR5A1Q13285 461 aa10.67□□□□□ -0.7
PTPN4-212ENST00000488896 ATP13A2Q9NQ11 1180 aa10.67□□□□□ -0.7
PTPN4-212ENST00000488896 GMPR2Q9P2T1 348 aaKnown RBP10.67□□□□□ -0.7
PTPN4-212ENST00000488896 NDUFB9Q9Y6M9 179 aa10.67□□□□□ -0.7
PTPN4-212ENST00000488896 APBB1O00213 710 aa10.66□□□□□ -0.7
PTPN4-212ENST00000488896 RAB15P59190 212 aa10.66□□□□□ -0.7
PTPN4-212ENST00000488896 DZIP3Q86Y13 1208 aaKnown RBP10.66□□□□□ -0.7
PTPN4-212ENST00000488896 MAP4K5Q9Y4K4 846 aa10.66□□□□□ -0.7
PTPN4-212ENST00000488896 ZBBXA8MT70 800 aa10.65□□□□□ -0.7
PTPN4-212ENST00000488896 ZIC2O95409 532 aaPredicted RBP10.65□□□□□ -0.7
PTPN4-212ENST00000488896 FBXO45P0C2W1 286 aa10.65□□□□□ -0.7
PTPN4-212ENST00000488896 TIMP2P16035 220 aa10.65□□□□□ -0.7
PTPN4-212ENST00000488896 KCTD15Q96SI1 283 aaPredicted RBP10.65□□□□□ -0.7
PTPN4-212ENST00000488896 ZFAND3Q9H8U3 227 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms