RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 SSH2Q76I76 1423 aa26.68■■□□□ 1.86
CCM2-216ENST00000488727 ZNF692Q9BU19 519 aaPredicted RBP26.68■■□□□ 1.86
CCM2-216ENST00000488727 ALS2Q96Q42 1657 aa26.68■■□□□ 1.86
CCM2-216ENST00000488727 HDGFL2Q7Z4V5 671 aaPredicted RBP26.68■■□□□ 1.86
CCM2-216ENST00000488727 SBNO1A3KN83 1393 aa26.67■■□□□ 1.86
CCM2-216ENST00000488727 TNS3Q68CZ2 1445 aa26.66■■□□□ 1.86
CCM2-216ENST00000488727 SPATA31A3Q5VYP0 1347 aa26.66■■□□□ 1.86
CCM2-216ENST00000488727 LRRC59Q96AG4 307 aaKnown RBP26.65■■□□□ 1.86
CCM2-216ENST00000488727 YTHDC1Q96MU7 727 aaKnown RBP26.65■■□□□ 1.86
CCM2-216ENST00000488727 SHPRHQ149N8 1683 aa26.63■■□□□ 1.85
CCM2-216ENST00000488727 PAK3O75914 559 aaPredicted RBP26.63■■□□□ 1.85
CCM2-216ENST00000488727 BRD4O60885 1362 aaPredicted RBP26.63■■□□□ 1.85
CCM2-216ENST00000488727 EDC4Q6P2E9 1401 aaKnown RBP26.63■■□□□ 1.85
CCM2-216ENST00000488727 PNPLA6Q8IY17 1366 aa26.61■■□□□ 1.85
CCM2-216ENST00000488727 PIK3C2AO00443 1686 aa26.61■■□□□ 1.85
CCM2-216ENST00000488727 CARD14Q9BXL6 1004 aa26.61■■□□□ 1.85
CCM2-216ENST00000488727 TTC21BQ7Z4L5 1316 aa26.61■■□□□ 1.85
CCM2-216ENST00000488727 PANK3Q9H999 370 aa26.6■■□□□ 1.85
CCM2-216ENST00000488727 COL22A1Q8NFW1 1626 aaPredicted RBP26.6■■□□□ 1.85
CCM2-216ENST00000488727 JCADQ9P266 1359 aa26.59■■□□□ 1.85
CCM2-216ENST00000488727 LMOD2Q6P5Q4 547 aa26.58■■□□□ 1.85
CCM2-216ENST00000488727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.58■■□□□ 1.85
CCM2-216ENST00000488727 NSD3Q9BZ95 1437 aa26.57■■□□□ 1.84
CCM2-216ENST00000488727 ARHGEF10O15013 1369 aa26.57■■□□□ 1.84
CCM2-216ENST00000488727 TTC21AQ8NDW8 1320 aa26.56■■□□□ 1.84
CCM2-216ENST00000488727 MARF1Q9Y4F3 1742 aaKnown RBP26.56■■□□□ 1.84
CCM2-216ENST00000488727 CRYBG1Q9Y4K1 1723 aa26.55■■□□□ 1.84
CCM2-216ENST00000488727 ABTB2Q8N961 1025 aa26.55■■□□□ 1.84
CCM2-216ENST00000488727 NUTM2GQ5VZR2 741 aa26.54■■□□□ 1.84
CCM2-216ENST00000488727 ABCA3Q99758 1704 aa26.54■■□□□ 1.84
CCM2-216ENST00000488727 MED1Q15648 1581 aaPredicted RBP26.54■■□□□ 1.84
CCM2-216ENST00000488727 KIF20BQ96Q89 1820 aa26.53■■□□□ 1.84
CCM2-216ENST00000488727 NME9Q86XW9 330 aa26.53■■□□□ 1.84
CCM2-216ENST00000488727 GTF3C3Q9Y5Q9 886 aa26.52■■□□□ 1.84
CCM2-216ENST00000488727 USP54Q70EL1 1684 aa26.52■■□□□ 1.84
CCM2-216ENST00000488727 DDX10Q13206 875 aaKnown RBP26.51■■□□□ 1.83
CCM2-216ENST00000488727 ZRANB1Q9UGI0 708 aa26.51■■□□□ 1.83
CCM2-216ENST00000488727 PLEKHG5O94827 1062 aa26.5■■□□□ 1.83
CCM2-216ENST00000488727 CABLES1Q8TDN4 633 aa26.5■■□□□ 1.83
CCM2-216ENST00000488727 PHRF1Q9P1Y6 1649 aaKnown RBP26.49■■□□□ 1.83
CCM2-216ENST00000488727 NLRP6P59044 892 aa26.48■■□□□ 1.83
CCM2-216ENST00000488727 FYB1O15117 783 aa26.48■■□□□ 1.83
CCM2-216ENST00000488727 PER1O15534 1290 aaPredicted RBP26.48■■□□□ 1.83
CCM2-216ENST00000488727 SPATA31A6Q5VVP1 1343 aa26.47■■□□□ 1.83
CCM2-216ENST00000488727 USP31Q70CQ4 1352 aa26.47■■□□□ 1.83
CCM2-216ENST00000488727 OVOS2A0A0J9YW53 1432 aa26.47■■□□□ 1.83
CCM2-216ENST00000488727 OVOS2Q6IE36 1432 aa26.47■■□□□ 1.83
CCM2-216ENST00000488727 USP19O94966 1318 aa26.47■■□□□ 1.83
CCM2-216ENST00000488727 LRP6O75581 1613 aa26.46■■□□□ 1.83
CCM2-216ENST00000488727 NLRP13Q86W25 1043 aa26.46■■□□□ 1.83
CCM2-216ENST00000488727 CGNL1Q0VF96 1302 aa26.45■■□□□ 1.82
CCM2-216ENST00000488727 SLIT3O75094 1523 aa26.45■■□□□ 1.82
CCM2-216ENST00000488727 GGNBP2Q9H3C7 697 aa26.44■■□□□ 1.82
CCM2-216ENST00000488727 KNSTRNQ9Y448 316 aa26.44■■□□□ 1.82
CCM2-216ENST00000488727 NUTM2BA6NNL0 878 aaPredicted RBP26.43■■□□□ 1.82
CCM2-216ENST00000488727 NUTM2EB1AL46 878 aaPredicted RBP26.43■■□□□ 1.82
CCM2-216ENST00000488727 NUTM2AQ8IVF1 878 aaPredicted RBP26.43■■□□□ 1.82
CCM2-216ENST00000488727 ANKRD26Q9UPS8 1709 aa26.43■■□□□ 1.82
CCM2-216ENST00000488727 AMER1Q5JTC6 1135 aaPredicted RBP26.4■■□□□ 1.82
CCM2-216ENST00000488727 COG3Q96JB2 828 aa26.39■■□□□ 1.81
CCM2-216ENST00000488727 GCP02774 474 aa26.38■■□□□ 1.81
CCM2-216ENST00000488727 HAP1P54257 671 aaPredicted RBP26.38■■□□□ 1.81
CCM2-216ENST00000488727 NFAT5O94916 1531 aa26.37■■□□□ 1.81
CCM2-216ENST00000488727 NSD2O96028 1365 aa26.36■■□□□ 1.81
CCM2-216ENST00000488727 CCER2I3L3R5 266 aa26.36■■□□□ 1.81
CCM2-216ENST00000488727 ADAMTS2O95450 1211 aa26.36■■□□□ 1.81
CCM2-216ENST00000488727 SOX12O15370 315 aa26.35■■□□□ 1.81
CCM2-216ENST00000488727 NPC1L1Q9UHC9 1359 aa26.33■■□□□ 1.8
CCM2-216ENST00000488727 ZC3H6P61129 1189 aaKnown RBP26.32■■□□□ 1.8
CCM2-216ENST00000488727 CC2D1BQ5T0F9 858 aaKnown RBP26.32■■□□□ 1.8
CCM2-216ENST00000488727 KCNH5Q8NCM2 988 aa26.32■■□□□ 1.8
CCM2-216ENST00000488727 ANP32CO43423 234 aa26.31■■□□□ 1.8
CCM2-216ENST00000488727 FBLN1P23142 703 aa26.31■■□□□ 1.8
CCM2-216ENST00000488727 LTN1O94822 1766 aa26.31■■□□□ 1.8
CCM2-216ENST00000488727 KIAA0232Q92628 1395 aa26.31■■□□□ 1.8
CCM2-216ENST00000488727 CPDO75976 1380 aa26.3■■□□□ 1.8
CCM2-216ENST00000488727 CNGB1Q14028 1251 aaPredicted RBP26.29■■□□□ 1.8
CCM2-216ENST00000488727 MEX3CQ5U5Q3 659 aaKnown RBP26.28■■□□□ 1.8
CCM2-216ENST00000488727 PLCH1Q4KWH8 1693 aa26.27■■□□□ 1.8
CCM2-216ENST00000488727 COL14A1Q05707 1796 aaKnown RBP26.27■■□□□ 1.8
CCM2-216ENST00000488727 FAM83GA6ND36 823 aa26.27■■□□□ 1.8
CCM2-216ENST00000488727 MORC1Q86VD1 984 aa26.26■■□□□ 1.79
CCM2-216ENST00000488727 ARHGEF25Q86VW2 580 aa26.26■■□□□ 1.79
CCM2-216ENST00000488727 C8orf37Q96NL8 207 aa26.26■■□□□ 1.79
CCM2-216ENST00000488727 PRDM11Q9NQV5 511 aa26.26■■□□□ 1.79
CCM2-216ENST00000488727 COL18A1P39060 1754 aa26.26■■□□□ 1.79
CCM2-216ENST00000488727 MAP2P11137 1827 aaKnown RBP26.26■■□□□ 1.79
CCM2-216ENST00000488727 CHRNA2Q15822 529 aa26.25■■□□□ 1.79
CCM2-216ENST00000488727 LMO7Q8WWI1 1683 aa26.25■■□□□ 1.79
CCM2-216ENST00000488727 TNNT2P45379 298 aaPredicted RBP26.25■■□□□ 1.79
CCM2-216ENST00000488727 ZBTB7CA1YPR0 619 aa26.23■■□□□ 1.79
CCM2-216ENST00000488727 RRS1Q15050 365 aaKnown RBP26.23■■□□□ 1.79
CCM2-216ENST00000488727 MAP3K19Q56UN5 1328 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 AATKQ6ZMQ8 1374 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 RGPD5Q99666 1765 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 SLIT2O94813 1529 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 PEAK1Q9H792 1746 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 NGLY1Q96IV0 654 aa26.22■■□□□ 1.79
CCM2-216ENST00000488727 NWD2Q9ULI1 1742 aa26.21■■□□□ 1.79
CCM2-216ENST00000488727 CAMTA1Q9Y6Y1 1673 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms