RNA–Protein interactions for RNA: ENST00000488631.1

PDPN-206, Transcript of podoplanin, humanhuman

TSL 3

Gene PDPN, Length 794 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-206ENST00000488631 POLR3GLQ9BT43 218 aa13.79□□□□□ -0.2
PDPN-206ENST00000488631 ACEP12821 1306 aa13.79□□□□□ -0.2
PDPN-206ENST00000488631 SPATA31A3Q5VYP0 1347 aa13.79□□□□□ -0.2
PDPN-206ENST00000488631 NUTM2GQ5VZR2 741 aa13.78□□□□□ -0.2
PDPN-206ENST00000488631 ZNF772Q68DY9 489 aaPredicted RBP13.78□□□□□ -0.2
PDPN-206ENST00000488631 CABLES1Q8TDN4 633 aa13.78□□□□□ -0.2
PDPN-206ENST00000488631 PPIP5K1Q6PFW1 1433 aa13.78□□□□□ -0.2
PDPN-206ENST00000488631 ADGRB2O60241 1585 aa13.78□□□□□ -0.2
PDPN-206ENST00000488631 SLC24A1O60721 1099 aa13.77□□□□□ -0.21
PDPN-206ENST00000488631 NHSL1Q5SYE7 1610 aa13.77□□□□□ -0.21
PDPN-206ENST00000488631 KIF1AQ12756 1690 aa13.76□□□□□ -0.21
PDPN-206ENST00000488631 ARHGEF10O15013 1369 aa13.76□□□□□ -0.21
PDPN-206ENST00000488631 USP47Q96K76 1375 aa13.76□□□□□ -0.21
PDPN-206ENST00000488631 ABTB2Q8N961 1025 aa13.76□□□□□ -0.21
PDPN-206ENST00000488631 PXDNQ92626 1479 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 SBNO1A3KN83 1393 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 AFF2P51816 1311 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 PLEKHG3A1L390 1219 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 ZBTB7CA1YPR0 619 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 TMF1P82094 1093 aa13.75□□□□□ -0.21
PDPN-206ENST00000488631 ATP7BP35670 1465 aa13.74□□□□□ -0.21
PDPN-206ENST00000488631 TNS3Q68CZ2 1445 aa13.74□□□□□ -0.21
PDPN-206ENST00000488631 ATAD2Q6PL18 1390 aa13.74□□□□□ -0.21
PDPN-206ENST00000488631 HDGFL2Q7Z4V5 671 aaPredicted RBP13.74□□□□□ -0.21
PDPN-206ENST00000488631 QRICH2Q9H0J4 1663 aa13.74□□□□□ -0.21
PDPN-206ENST00000488631 LRP6O75581 1613 aa13.73□□□□□ -0.21
PDPN-206ENST00000488631 USP21Q9UK80 565 aa13.73□□□□□ -0.21
PDPN-206ENST00000488631 CCDC9Q9Y3X0 531 aaKnown RBP13.73□□□□□ -0.21
PDPN-206ENST00000488631 EIF4G2P78344 907 aaKnown RBP eCLIP13.72□□□□□ -0.21
PDPN-206ENST00000488631 CDCA8Q53HL2 280 aa13.72□□□□□ -0.21
PDPN-206ENST00000488631 SHPRHQ149N8 1683 aa13.72□□□□□ -0.21
PDPN-206ENST00000488631 USP32Q8NFA0 1604 aa13.72□□□□□ -0.21
PDPN-206ENST00000488631 RGPD8O14715 1765 aaPredicted RBP13.71□□□□□ -0.21
PDPN-206ENST00000488631 POTEAQ6S8J7 498 aa13.71□□□□□ -0.21
PDPN-206ENST00000488631 ZNF692Q9BU19 519 aaPredicted RBP13.71□□□□□ -0.21
PDPN-206ENST00000488631 QTRT2Q9H974 415 aaKnown RBP13.71□□□□□ -0.21
PDPN-206ENST00000488631 TERF2IPQ9NYB0 399 aa13.71□□□□□ -0.21
PDPN-206ENST00000488631 RGS17Q9UGC6 210 aaPredicted RBP13.71□□□□□ -0.21
PDPN-206ENST00000488631 SOX12O15370 315 aa13.7□□□□□ -0.22
PDPN-206ENST00000488631 RXRBP28702 533 aa13.7□□□□□ -0.22
PDPN-206ENST00000488631 NLRP6P59044 892 aa13.7□□□□□ -0.22
PDPN-206ENST00000488631 NLRP13Q86W25 1043 aa13.7□□□□□ -0.22
PDPN-206ENST00000488631 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.7□□□□□ -0.22
PDPN-206ENST00000488631 ATXN8OSP0DMR3 200 aa13.69□□□□□ -0.22
PDPN-206ENST00000488631 SLC12A5Q9H2X9 1139 aa13.69□□□□□ -0.22
PDPN-206ENST00000488631 PRDM11Q9NQV5 511 aa13.69□□□□□ -0.22
PDPN-206ENST00000488631 POLR3AO14802 1390 aaPredicted RBP13.69□□□□□ -0.22
PDPN-206ENST00000488631 KTN1Q86UP2 1357 aaKnown RBP13.69□□□□□ -0.22
PDPN-206ENST00000488631 ZC3H6P61129 1189 aaKnown RBP13.68□□□□□ -0.22
PDPN-206ENST00000488631 SBNO2Q9Y2G9 1366 aa13.68□□□□□ -0.22
PDPN-206ENST00000488631 ITSN1Q15811 1721 aa13.67□□□□□ -0.22
PDPN-206ENST00000488631 A0A0G2JS52 829 aa13.67□□□□□ -0.22
PDPN-206ENST00000488631 MYT1Q01538 1121 aa13.67□□□□□ -0.22
PDPN-206ENST00000488631 TESK2Q96S53 571 aa13.67□□□□□ -0.22
PDPN-206ENST00000488631 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
PDPN-206ENST00000488631 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
PDPN-206ENST00000488631 EVA1CP58658 441 aa13.66□□□□□ -0.22
PDPN-206ENST00000488631 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 FAM83GA6ND36 823 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 RBM6P78332 1123 aaKnown RBP13.64□□□□□ -0.23
PDPN-206ENST00000488631 CHRNA2Q15822 529 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 UNC5CLQ8IV45 518 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 FNBP4Q8N3X1 1017 aaPredicted RBP13.64□□□□□ -0.23
PDPN-206ENST00000488631 PUS7Q96PZ0 661 aaKnown RBP13.64□□□□□ -0.23
PDPN-206ENST00000488631 STRN4Q9NRL3 753 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 BTG4Q9NY30 223 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 USP6P35125 1406 aa13.64□□□□□ -0.23
PDPN-206ENST00000488631 BRD4O60885 1362 aaPredicted RBP13.63□□□□□ -0.23
PDPN-206ENST00000488631 TTC21AQ8NDW8 1320 aa13.63□□□□□ -0.23
PDPN-206ENST00000488631 KIAA0232Q92628 1395 aa13.61□□□□□ -0.23
PDPN-206ENST00000488631 GCP02774 474 aa13.61□□□□□ -0.23
PDPN-206ENST00000488631 NME9Q86XW9 330 aa13.61□□□□□ -0.23
PDPN-206ENST00000488631 COL22A1Q8NFW1 1626 aaPredicted RBP13.61□□□□□ -0.23
PDPN-206ENST00000488631 NINLQ9Y2I6 1382 aa13.6□□□□□ -0.23
PDPN-206ENST00000488631 KCNH5Q8NCM2 988 aa13.6□□□□□ -0.23
PDPN-206ENST00000488631 TOPAZ1Q8N9V7 1692 aa13.59□□□□□ -0.23
PDPN-206ENST00000488631 COG3Q96JB2 828 aa13.59□□□□□ -0.23
PDPN-206ENST00000488631 GJD4Q96KN9 370 aaPredicted RBP13.59□□□□□ -0.23
PDPN-206ENST00000488631 USP35Q9P2H5 1018 aa13.59□□□□□ -0.23
PDPN-206ENST00000488631 ZRANB1Q9UGI0 708 aa13.59□□□□□ -0.23
PDPN-206ENST00000488631 A0A1W2PP64 1363 aa13.58□□□□□ -0.23
PDPN-206ENST00000488631 CSB-PGBD3P0DP91 1061 aa13.58□□□□□ -0.24
PDPN-206ENST00000488631 CPSF1Q10570 1443 aaKnown RBP13.57□□□□□ -0.24
PDPN-206ENST00000488631 TRPM3Q9HCF6 1732 aaPredicted RBP13.57□□□□□ -0.24
PDPN-206ENST00000488631 VPS72Q15906 364 aa13.57□□□□□ -0.24
PDPN-206ENST00000488631 EDC4Q6P2E9 1401 aaKnown RBP13.56□□□□□ -0.24
PDPN-206ENST00000488631 USP19O94966 1318 aa13.55□□□□□ -0.24
PDPN-206ENST00000488631 ANKRD36BQ8N2N9 1353 aa13.55□□□□□ -0.24
PDPN-206ENST00000488631 BCL9LQ86UU0 1499 aa13.55□□□□□ -0.24
PDPN-206ENST00000488631 ALS2Q96Q42 1657 aa13.54□□□□□ -0.24
PDPN-206ENST00000488631 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
PDPN-206ENST00000488631 GGNBP2Q9H3C7 697 aa13.54□□□□□ -0.24
PDPN-206ENST00000488631 ATRNO75882 1429 aa13.54□□□□□ -0.24
PDPN-206ENST00000488631 TOM1L2Q6ZVM7 507 aa13.53□□□□□ -0.24
PDPN-206ENST00000488631 ZBTB12Q9Y330 459 aaPredicted RBP13.53□□□□□ -0.24
PDPN-206ENST00000488631 SLIT2O94813 1529 aa13.53□□□□□ -0.24
PDPN-206ENST00000488631 AMPHP49418 695 aa13.52□□□□□ -0.25
PDPN-206ENST00000488631 CNGB1Q14028 1251 aaPredicted RBP13.52□□□□□ -0.25
PDPN-206ENST00000488631 SEPT12Q8IYM1 358 aa13.52□□□□□ -0.25
PDPN-206ENST00000488631 PANK3Q9H999 370 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms