RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FSD1Q9BTV5 496 aa19.77■□□□□ 0.76
COL7A1-210ENST00000487017 MVPQ14764 893 aaKnown RBP19.77■□□□□ 0.76
COL7A1-210ENST00000487017 MNS1Q8NEH6 495 aa19.77■□□□□ 0.75
COL7A1-210ENST00000487017 MAP7D2Q96T17 732 aa19.77■□□□□ 0.75
COL7A1-210ENST00000487017 RAPGEF4Q8WZA2 1011 aa19.76■□□□□ 0.75
COL7A1-210ENST00000487017 CCDC27Q2M243 656 aa19.76■□□□□ 0.75
COL7A1-210ENST00000487017 SLC12A5Q9H2X9 1139 aa19.76■□□□□ 0.75
COL7A1-210ENST00000487017 CWC22Q9HCG8 908 aaKnown RBP19.76■□□□□ 0.75
COL7A1-210ENST00000487017 GNAI2P04899 355 aa19.75■□□□□ 0.75
COL7A1-210ENST00000487017 ATF7IPQ6VMQ6 1270 aa19.75■□□□□ 0.75
COL7A1-210ENST00000487017 TCEAL9Q9UHQ7 104 aa19.75■□□□□ 0.75
COL7A1-210ENST00000487017 WASHC4Q2M389 1173 aa19.74■□□□□ 0.75
COL7A1-210ENST00000487017 IL27Q8NEV9 243 aa19.74■□□□□ 0.75
COL7A1-210ENST00000487017 TROQ12816 1431 aaPredicted RBP19.74■□□□□ 0.75
COL7A1-210ENST00000487017 K7ELQ4 463 aaPredicted RBP19.74■□□□□ 0.75
COL7A1-210ENST00000487017 VPS37DQ86XT2 251 aa19.74■□□□□ 0.75
COL7A1-210ENST00000487017 SDF4Q9BRK5 362 aa19.74■□□□□ 0.75
COL7A1-210ENST00000487017 HIP1O00291 1037 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 NLRP6P59044 892 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 CYB5RLQ6IPT4 315 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 PLEKHH2Q8IVE3 1493 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 PDCP20941 246 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 OLFM4Q6UX06 510 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 OSCARQ8IYS5 282 aa19.73■□□□□ 0.75
COL7A1-210ENST00000487017 DHX16O60231 1041 aaKnown RBP19.72■□□□□ 0.75
COL7A1-210ENST00000487017 PRG4Q92954 1404 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-210ENST00000487017 TRIM5Q9C035 493 aa19.72■□□□□ 0.75
COL7A1-210ENST00000487017 PRAM1Q96QH2 718 aa19.72■□□□□ 0.75
COL7A1-210ENST00000487017 TRIM34Q9BYJ4 488 aa19.71■□□□□ 0.75
COL7A1-210ENST00000487017 NAIPQ13075 1403 aa19.71■□□□□ 0.75
COL7A1-210ENST00000487017 NUTM2GQ5VZR2 741 aa19.71■□□□□ 0.75
COL7A1-210ENST00000487017 CHD1LQ86WJ1 897 aa19.71■□□□□ 0.75
COL7A1-210ENST00000487017 ERC1Q8IUD2 1116 aa19.7■□□□□ 0.74
COL7A1-210ENST00000487017 SLC4A2P04920 1241 aa19.69■□□□□ 0.74
COL7A1-210ENST00000487017 CCT4P50991 539 aaKnown RBP19.69■□□□□ 0.74
COL7A1-210ENST00000487017 GRPEL1Q9HAV7 217 aa19.69■□□□□ 0.74
COL7A1-210ENST00000487017 CTDP1Q9Y5B0 961 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-210ENST00000487017 SLFN5Q08AF3 891 aa19.69■□□□□ 0.74
COL7A1-210ENST00000487017 FIBPO43427 364 aa19.69■□□□□ 0.74
COL7A1-210ENST00000487017 KINO60870 393 aaKnown RBP19.68■□□□□ 0.74
COL7A1-210ENST00000487017 ACBD3Q9H3P7 528 aa19.68■□□□□ 0.74
COL7A1-210ENST00000487017 LRRCC1Q9C099 1032 aa19.68■□□□□ 0.74
COL7A1-210ENST00000487017 CIZ1Q9ULV3 898 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-210ENST00000487017 BCL11BQ9C0K0 894 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-210ENST00000487017 NLRP2Q9NX02 1062 aa19.67■□□□□ 0.74
COL7A1-210ENST00000487017 SYTL4Q96C24 671 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-210ENST00000487017 HMGN5P82970 282 aaKnown RBP19.66■□□□□ 0.74
COL7A1-210ENST00000487017 FAM69CQ0P6D2 419 aa19.66■□□□□ 0.74
COL7A1-210ENST00000487017 PDILTQ8N807 584 aa19.66■□□□□ 0.74
COL7A1-210ENST00000487017 DNAJC2Q99543 621 aaKnown RBP19.66■□□□□ 0.74
COL7A1-210ENST00000487017 BRMS1Q9HCU9 246 aa19.66■□□□□ 0.74
COL7A1-210ENST00000487017 WDR33Q9C0J8 1336 aaKnown RBP19.66■□□□□ 0.74
COL7A1-210ENST00000487017 MCM4P33991 863 aa19.65■□□□□ 0.74
COL7A1-210ENST00000487017 CDK19Q9BWU1 502 aa19.65■□□□□ 0.74
COL7A1-210ENST00000487017 XBP1P17861 261 aa19.65■□□□□ 0.74
COL7A1-210ENST00000487017 SAMD1Q6SPF0 538 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-210ENST00000487017 AEBP1Q8IUX7 1158 aa19.65■□□□□ 0.74
COL7A1-210ENST00000487017 ZNF396Q96N95 335 aaPredicted RBP19.64■□□□□ 0.74
COL7A1-210ENST00000487017 SULT6B1Q6IMI4 303 aa19.64■□□□□ 0.74
COL7A1-210ENST00000487017 PLEKHO1Q53GL0 409 aaPredicted RBP19.64■□□□□ 0.73
COL7A1-210ENST00000487017 CABP1Q9NZU7 370 aa19.64■□□□□ 0.73
COL7A1-210ENST00000487017 CYP46A1Q9Y6A2 500 aa19.64■□□□□ 0.73
COL7A1-210ENST00000487017 HSP90B2PQ58FF3 399 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 RUFY1Q96T51 708 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 AK7Q96M32 723 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 SMC2O95347 1197 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 TOPBP1Q92547 1522 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 ABTB2Q8N961 1025 aa19.63■□□□□ 0.73
COL7A1-210ENST00000487017 HDGFL1Q5TGJ6 251 aa19.62■□□□□ 0.73
COL7A1-210ENST00000487017 ZNF428Q96B54 188 aa19.62■□□□□ 0.73
COL7A1-210ENST00000487017 CCDC192P0DO97 292 aa19.62■□□□□ 0.73
COL7A1-210ENST00000487017 PKNOX2Q96KN3 472 aa19.62■□□□□ 0.73
COL7A1-210ENST00000487017 SRCIN1Q9C0H9 1055 aa19.61■□□□□ 0.73
COL7A1-210ENST00000487017 POLA1P09884 1462 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-210ENST00000487017 CCP110O43303 1012 aa19.61■□□□□ 0.73
COL7A1-210ENST00000487017 ANKRD1Q15327 319 aa19.61■□□□□ 0.73
COL7A1-210ENST00000487017 ZNF692Q9BU19 519 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-210ENST00000487017 NAP1L1P55209 391 aaKnown RBP19.61■□□□□ 0.73
COL7A1-210ENST00000487017 SART3Q15020 963 aaKnown RBP19.61■□□□□ 0.73
COL7A1-210ENST00000487017 TBC1D2BQ9UPU7 963 aa19.61■□□□□ 0.73
COL7A1-210ENST00000487017 GPRASP1Q5JY77 1395 aa19.6■□□□□ 0.73
COL7A1-210ENST00000487017 PCF11O94913 1555 aaKnown RBP19.6■□□□□ 0.73
COL7A1-210ENST00000487017 SPC24Q8NBT2 197 aa19.59■□□□□ 0.73
COL7A1-210ENST00000487017 EPRSP07814 1512 aaKnown RBP19.59■□□□□ 0.73
COL7A1-210ENST00000487017 STK38Q15208 465 aa19.59■□□□□ 0.73
COL7A1-210ENST00000487017 ANKRD30BQ9BXX2 1392 aa19.59■□□□□ 0.73
COL7A1-210ENST00000487017 FCHSD2O94868 740 aa19.59■□□□□ 0.73
COL7A1-210ENST00000487017 CNKSR2Q8WXI2 1034 aa19.59■□□□□ 0.73
COL7A1-210ENST00000487017 NSD3Q9BZ95 1437 aa19.58■□□□□ 0.73
COL7A1-210ENST00000487017 TXNDC2Q86VQ3 553 aa19.58■□□□□ 0.73
COL7A1-210ENST00000487017 RPGRIP1LQ68CZ1 1315 aa19.58■□□□□ 0.72
COL7A1-210ENST00000487017 IFT140Q96RY7 1462 aa19.58■□□□□ 0.72
COL7A1-210ENST00000487017 ATF3P18847 181 aa19.58■□□□□ 0.72
COL7A1-210ENST00000487017 FMNL2Q96PY5 1086 aa19.58■□□□□ 0.72
COL7A1-210ENST00000487017 ATAD2Q6PL18 1390 aa19.58■□□□□ 0.72
COL7A1-210ENST00000487017 CDK13Q14004 1512 aaKnown RBP19.58■□□□□ 0.72
COL7A1-210ENST00000487017 KRT85P78386 507 aa19.57■□□□□ 0.72
COL7A1-210ENST00000487017 CEBPZQ03701 1054 aaKnown RBP19.57■□□□□ 0.72
COL7A1-210ENST00000487017 TMEM57Q8N5G2 664 aa19.57■□□□□ 0.72
COL7A1-210ENST00000487017 TNMDQ9H2S6 317 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms