RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 ZCCHC11Q5TAX3 1644 aaKnown RBP15.32■□□□□ 0.04
SHROOM3-208ENST00000486758 NKTRP30414 1462 aaKnown RBP15.32■□□□□ 0.04
SHROOM3-208ENST00000486758 NUTM2GQ5VZR2 741 aa15.32■□□□□ 0.04
SHROOM3-208ENST00000486758 MCTP1Q6DN14 999 aa15.32■□□□□ 0.04
SHROOM3-208ENST00000486758 RNF214Q8ND24 703 aa15.31■□□□□ 0.04
SHROOM3-208ENST00000486758 RRP9O43818 475 aaKnown RBP15.31■□□□□ 0.04
SHROOM3-208ENST00000486758 ZNF521Q96K83 1311 aa15.3■□□□□ 0.04
SHROOM3-208ENST00000486758 TMPOP42166 694 aaKnown RBP15.3■□□□□ 0.04
SHROOM3-208ENST00000486758 CLCN1P35523 988 aa15.3■□□□□ 0.04
SHROOM3-208ENST00000486758 CAVIN1Q6NZI2 390 aaKnown RBP15.3■□□□□ 0.04
SHROOM3-208ENST00000486758 E9PCH4 1651 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 TMEM57Q8N5G2 664 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 PHF23Q9BUL5 403 aaPredicted RBP15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 POGZQ7Z3K3 1410 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 ASXL1Q8IXJ9 1541 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 WDR7Q9Y4E6 1490 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 GPRASP1Q5JY77 1395 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 ZNF428Q96B54 188 aa15.29■□□□□ 0.04
SHROOM3-208ENST00000486758 TNPO1Q92973 898 aaKnown RBP15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 C14orf93Q9H972 538 aaKnown RBP15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 DDX19BQ9UMR2 479 aa15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 ZMYM4Q5VZL5 1548 aa15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 EMILIN1Q9Y6C2 1016 aa15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 PIP4K2BP78356 416 aa15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 MVPQ14764 893 aaKnown RBP15.28■□□□□ 0.04
SHROOM3-208ENST00000486758 COG3Q96JB2 828 aa15.27■□□□□ 0.04
SHROOM3-208ENST00000486758 ZRANB1Q9UGI0 708 aa15.27■□□□□ 0.03
SHROOM3-208ENST00000486758 NCKAP5LQ9HCH0 1330 aa15.27■□□□□ 0.03
SHROOM3-208ENST00000486758 TRIM27P14373 513 aa15.26■□□□□ 0.03
SHROOM3-208ENST00000486758 RBM42Q9BTD8 480 aaKnown RBP15.26■□□□□ 0.03
SHROOM3-208ENST00000486758 TRPM1Q7Z4N2 1603 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 ATF7IPQ6VMQ6 1270 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 NME9Q86XW9 330 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 MIS18AQ9NYP9 233 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 SSFA2P28290 1259 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 PRDM10Q9NQV6 1147 aa15.25■□□□□ 0.03
SHROOM3-208ENST00000486758 FAM83GA6ND36 823 aa15.24■□□□□ 0.03
SHROOM3-208ENST00000486758 WDR63Q8IWG1 891 aa15.24■□□□□ 0.03
SHROOM3-208ENST00000486758 RTF1Q92541 710 aaKnown RBP15.24■□□□□ 0.03
SHROOM3-208ENST00000486758 XPCQ01831 940 aaPredicted RBP15.24■□□□□ 0.03
SHROOM3-208ENST00000486758 NGDNQ8NEJ9 315 aaKnown RBP15.24■□□□□ 0.03
SHROOM3-208ENST00000486758 BCL11BQ9C0K0 894 aaPredicted RBP15.23■□□□□ 0.03
SHROOM3-208ENST00000486758 SLC26A8Q96RN1 970 aa15.23■□□□□ 0.03
SHROOM3-208ENST00000486758 CROCC2H7BZ55 1655 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 FYB1O15117 783 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 ATP10AO60312 1499 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 DIP2BQ9P265 1576 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 MAST1Q9Y2H9 1570 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 SKOR2Q2VWA4 1001 aaPredicted RBP15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 NGEFQ8N5V2 710 aa15.22■□□□□ 0.03
SHROOM3-208ENST00000486758 UBAP1LF5GYI3 381 aa15.21■□□□□ 0.03
SHROOM3-208ENST00000486758 PRPF40AO75400 957 aaKnown RBP15.21■□□□□ 0.03
SHROOM3-208ENST00000486758 ARHGEF5Q12774 1597 aa15.21■□□□□ 0.03
SHROOM3-208ENST00000486758 SULT6B1Q6IMI4 303 aa15.21■□□□□ 0.02
SHROOM3-208ENST00000486758 AMPHP49418 695 aa15.2■□□□□ 0.02
SHROOM3-208ENST00000486758 ANTXR1Q9H6X2 564 aa15.2■□□□□ 0.02
SHROOM3-208ENST00000486758 GAS2L3Q86XJ1 694 aa15.2■□□□□ 0.02
SHROOM3-208ENST00000486758 FBXO41Q8TF61 875 aa15.2■□□□□ 0.02
SHROOM3-208ENST00000486758 CDC42BPBQ9Y5S2 1711 aa15.19■□□□□ 0.02
SHROOM3-208ENST00000486758 TWISTNBQ3B726 338 aaPredicted RBP15.19■□□□□ 0.02
SHROOM3-208ENST00000486758 RBM33Q96EV2 1170 aaKnown RBP15.19■□□□□ 0.02
SHROOM3-208ENST00000486758 TRMT2AQ8IZ69 625 aaKnown RBP15.18■□□□□ 0.02
SHROOM3-208ENST00000486758 ERBB4Q15303 1308 aa15.18■□□□□ 0.02
SHROOM3-208ENST00000486758 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.18■□□□□ 0.02
SHROOM3-208ENST00000486758 MCM10Q7L590 875 aa15.18■□□□□ 0.02
SHROOM3-208ENST00000486758 KIF16BQ96L93 1317 aa15.18■□□□□ 0.02
SHROOM3-208ENST00000486758 TPM2P07951 284 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 PDE4CQ08493 712 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 PHACTR3Q96KR7 559 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 SLC52A1Q9NWF4 448 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 PREX2Q70Z35 1606 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 KIF13AQ9H1H9 1805 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 TRIM6-TRIM34B2RNG4 842 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 CASC1Q6TDU7 716 aa15.17■□□□□ 0.02
SHROOM3-208ENST00000486758 CCDC173Q0VFZ6 552 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 KRT24Q2M2I5 525 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 PIK3C2GO75747 1445 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 UQCRHLA0A096LP55 91 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 UQCRHP07919 91 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 ZSCAN30Q86W11 494 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 TSPYL6Q8N831 410 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 EIF2AK4Q9P2K8 1649 aaKnown RBP15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 CHAMP1Q96JM3 812 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 TAOK2Q9UL54 1235 aa15.16■□□□□ 0.02
SHROOM3-208ENST00000486758 K7ELQ4 463 aaPredicted RBP15.15■□□□□ 0.02
SHROOM3-208ENST00000486758 RBM27Q9P2N5 1060 aaKnown RBP15.15■□□□□ 0.02
SHROOM3-208ENST00000486758 MYO5CQ9NQX4 1742 aa15.15■□□□□ 0.02
SHROOM3-208ENST00000486758 OS9Q13438 667 aaPredicted RBP15.15■□□□□ 0.02
SHROOM3-208ENST00000486758 GNAI1P63096 354 aa15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 A0A1W2PP64 1363 aa15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 EIF2S2P20042 333 aaKnown RBP15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 CHD1LQ86WJ1 897 aa15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 RILPL2Q969X0 211 aa15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 PRDM15P57071 1507 aaPredicted RBP15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 ZHX1Q9UKY1 873 aaPredicted RBP15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 ATP7AQ04656 1500 aa15.14■□□□□ 0.01
SHROOM3-208ENST00000486758 SMARCA5O60264 1052 aaPredicted RBP15.13■□□□□ 0.01
SHROOM3-208ENST00000486758 CD2BP2O95400 341 aaKnown RBP15.13■□□□□ 0.01
SHROOM3-208ENST00000486758 POLR3AO14802 1390 aaPredicted RBP15.13■□□□□ 0.01
SHROOM3-208ENST00000486758 ERVK-7P63135 1459 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms