RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 FMN1Q68DA7 1419 aa8.89□□□□□ -0.99
PTPN4-210ENST00000485247 STRCP1A6NGW2 1772 aa8.89□□□□□ -0.99
PTPN4-210ENST00000485247 HCSTQ9UBK5 93 aa8.89□□□□□ -0.99
PTPN4-210ENST00000485247 SEPT9Q9UHD8 586 aaPredicted RBP8.89□□□□□ -0.99
PTPN4-210ENST00000485247 MED14O60244 1454 aa8.89□□□□□ -0.99
PTPN4-210ENST00000485247 PLXNC1O60486 1568 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 C3orf80F5H4A9 247 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 THSD4Q6ZMP0 1018 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 WNT2BQ93097 391 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 CDCA7LQ96GN5 454 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 NPDC1Q9NQX5 325 aaPredicted RBP8.88□□□□□ -0.99
PTPN4-210ENST00000485247 ATP7AQ04656 1500 aa8.88□□□□□ -0.99
PTPN4-210ENST00000485247 SYCP2Q9BX26 1530 aa8.87□□□□□ -0.99
PTPN4-210ENST00000485247 PRSS12P56730 875 aa8.87□□□□□ -0.99
PTPN4-210ENST00000485247 TRIM52Q96A61 297 aa8.87□□□□□ -0.99
PTPN4-210ENST00000485247 SYNMO15061 1565 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 FAM135AQ9P2D6 1515 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 IQGAP1P46940 1657 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 GOLGA8CPA6NN73 597 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 LAPTM4BQ86VI4 370 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 DEPDC5O75140 1603 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 FAM135BQ49AJ0 1406 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 UGGT1Q9NYU2 1555 aa8.86□□□□□ -0.99
PTPN4-210ENST00000485247 PTPN5P54829 565 aa8.85□□□□□ -0.99
PTPN4-210ENST00000485247 CDC42BPAQ5VT25 1732 aa8.84□□□□□ -0.99
PTPN4-210ENST00000485247 LRRIQ1Q96JM4 1722 aa8.84□□□□□ -0.99
PTPN4-210ENST00000485247 ZFRQ96KR1 1074 aaKnown RBP8.84□□□□□ -0.99
PTPN4-210ENST00000485247 MIA2Q96PC5 1412 aa8.84□□□□□ -0.99
PTPN4-210ENST00000485247 INO80Q9ULG1 1556 aaPredicted RBP8.84□□□□□ -0.99
PTPN4-210ENST00000485247 PZPP20742 1482 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 NLRP1Q9C000 1473 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 WASHC2CQ9Y4E1 1318 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 SMAPO00193 183 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 BCAMP50895 628 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 FAM98CQ17RN3 349 aaKnown RBP8.83□□□□□ -1
PTPN4-210ENST00000485247 VSIG10Q8N0Z9 540 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 TTC13Q8NBP0 860 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 ARHGAP35Q9NRY4 1499 aa8.83□□□□□ -1
PTPN4-210ENST00000485247 TESPA1A2RU30 521 aaPredicted RBP8.82□□□□□ -1
PTPN4-210ENST00000485247 KIF3BO15066 747 aa8.82□□□□□ -1
PTPN4-210ENST00000485247 UBTFP17480 764 aaKnown RBP8.82□□□□□ -1
PTPN4-210ENST00000485247 PADI6Q6TGC4 694 aa8.82□□□□□ -1
PTPN4-210ENST00000485247 PACS2Q86VP3 889 aa8.82□□□□□ -1
PTPN4-210ENST00000485247 ANKK1Q8NFD2 765 aa8.82□□□□□ -1
PTPN4-210ENST00000485247 RBM27Q9P2N5 1060 aaKnown RBP8.82□□□□□ -1
PTPN4-210ENST00000485247 GPATCH8Q9UKJ3 1502 aaKnown RBP8.81□□□□□ -1
PTPN4-210ENST00000485247 CFDP1Q9UEE9 299 aaPredicted RBP8.81□□□□□ -1
PTPN4-210ENST00000485247 KIAA1107Q9UPP5 1409 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 SOWAHBA6NEL2 793 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 PTGDRQ13258 359 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 MEX3CQ5U5Q3 659 aaKnown RBP8.8□□□□□ -1
PTPN4-210ENST00000485247 ZNF772Q68DY9 489 aaPredicted RBP8.8□□□□□ -1
PTPN4-210ENST00000485247 TATDN2Q93075 761 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 ADGBQ8N7X0 1667 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 ROBO1Q9Y6N7 1651 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 XIRP1Q702N8 1843 aaKnown RBP8.8□□□□□ -1
PTPN4-210ENST00000485247 KDM5DQ9BY66 1539 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 EEA1Q15075 1411 aa8.8□□□□□ -1
PTPN4-210ENST00000485247 DHX29Q7Z478 1369 aaKnown RBP8.79□□□□□ -1
PTPN4-210ENST00000485247 JCADQ9P266 1359 aa8.79□□□□□ -1
PTPN4-210ENST00000485247 RXRBP28702 533 aa8.79□□□□□ -1
PTPN4-210ENST00000485247 PNMA3Q9UL41 463 aa8.79□□□□□ -1
PTPN4-210ENST00000485247 ZC3H13Q5T200 1668 aaKnown RBP8.78□□□□□ -1
PTPN4-210ENST00000485247 PLEKHH2Q8IVE3 1493 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 TMEM94Q12767 1356 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 NBPF26B4DH59 902 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 LTKP29376 864 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 NUDT18Q6ZVK8 323 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 TXNDC2Q86VQ3 553 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 PLA2G2EQ9NZK7 142 aa8.78□□□□□ -1
PTPN4-210ENST00000485247 RBM26Q5T8P6 1007 aaKnown RBP8.77□□□□□ -1.01
PTPN4-210ENST00000485247 ZNF644Q9H582 1327 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-210ENST00000485247 CCDC18Q5T9S5 1454 aa8.77□□□□□ -1.01
PTPN4-210ENST00000485247 SCAF11Q99590 1463 aaKnown RBP8.77□□□□□ -1.01
PTPN4-210ENST00000485247 SRCAPQ6ZRS2 3230 aa8.76□□□□□ -1.01
PTPN4-210ENST00000485247 NUTM2FA1L443 756 aa8.76□□□□□ -1.01
PTPN4-210ENST00000485247 PROSER2Q86WR7 435 aaPredicted RBP8.76□□□□□ -1.01
PTPN4-210ENST00000485247 LRP6O75581 1613 aa8.76□□□□□ -1.01
PTPN4-210ENST00000485247 CCNB3Q8WWL7 1395 aa8.75□□□□□ -1.01
PTPN4-210ENST00000485247 PHLPP1O60346 1717 aa8.75□□□□□ -1.01
PTPN4-210ENST00000485247 WBP1LQ9NX94 342 aa8.75□□□□□ -1.01
PTPN4-210ENST00000485247 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-210ENST00000485247 SLAIN2Q9P270 581 aa8.75□□□□□ -1.01
PTPN4-210ENST00000485247 RTEL1-TNFRSF6BF6WH68 1400 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 CASKIN1Q8WXD9 1431 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 SAMD7Q7Z3H4 446 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 LRCH3Q96II8 777 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 EID1Q9Y6B2 187 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 SPATA31A6Q5VVP1 1343 aa8.74□□□□□ -1.01
PTPN4-210ENST00000485247 LRRC9Q6ZRR7 1453 aa8.73□□□□□ -1.01
PTPN4-210ENST00000485247 MBD5Q9P267 1494 aa8.73□□□□□ -1.01
PTPN4-210ENST00000485247 GPR37O15354 613 aa8.73□□□□□ -1.01
PTPN4-210ENST00000485247 KCNA6P17658 529 aa8.73□□□□□ -1.01
PTPN4-210ENST00000485247 EYA1Q99502 592 aa8.73□□□□□ -1.01
PTPN4-210ENST00000485247 MAP3K1Q13233 1512 aa8.72□□□□□ -1.01
PTPN4-210ENST00000485247 NUTM2BA6NNL0 878 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-210ENST00000485247 NUTM2EB1AL46 878 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-210ENST00000485247 NUTM2DQ5VT03 806 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-210ENST00000485247 NUTM2AQ8IVF1 878 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-210ENST00000485247 SLC26A8Q96RN1 970 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms