RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 XP32Q5T750 250 aa8.09□□□□□ -1.11
VPS50-216ENST00000484954 KCTD17Q8N5Z5 321 aa8.09□□□□□ -1.11
VPS50-216ENST00000484954 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
VPS50-216ENST00000484954 SOBPA7XYQ1 873 aa8.08□□□□□ -1.12
VPS50-216ENST00000484954 JUNDP17535 347 aa8.07□□□□□ -1.12
VPS50-216ENST00000484954 TBC1D2Q9BYX2 928 aa8.07□□□□□ -1.12
VPS50-216ENST00000484954 KRTAP9-6A0A140TA67 174 aa8.06□□□□□ -1.12
VPS50-216ENST00000484954 FDX1P10109 184 aa8.06□□□□□ -1.12
VPS50-216ENST00000484954 KCNMA1Q12791 1236 aa8.06□□□□□ -1.12
VPS50-216ENST00000484954 NUDT12Q9BQG2 462 aa8.06□□□□□ -1.12
VPS50-216ENST00000484954 GPBP1L1Q9HC44 474 aaPredicted RBP8.06□□□□□ -1.12
VPS50-216ENST00000484954 SH3BP2P78314 561 aa8.04□□□□□ -1.12
VPS50-216ENST00000484954 PURBQ96QR8 312 aaKnown RBP8.04□□□□□ -1.12
VPS50-216ENST00000484954 TLL2Q9Y6L7 1015 aa8.04□□□□□ -1.12
VPS50-216ENST00000484954 LINC01559Q495D7 138 aa8.03□□□□□ -1.12
VPS50-216ENST00000484954 PCDHB15Q9Y5E8 787 aa8.03□□□□□ -1.12
VPS50-216ENST00000484954 MRPL14Q6P1L8 145 aaKnown RBP8.02□□□□□ -1.13
VPS50-216ENST00000484954 C6orf229H3BNL8 230 aa8.01□□□□□ -1.13
VPS50-216ENST00000484954 SCARF1Q14162 830 aa8.01□□□□□ -1.13
VPS50-216ENST00000484954 RSBN1LQ6PCB5 846 aaPredicted RBP8.01□□□□□ -1.13
VPS50-216ENST00000484954 NNTQ13423 1086 aa8□□□□□ -1.13
VPS50-216ENST00000484954 MYSM1Q5VVJ2 828 aa8□□□□□ -1.13
VPS50-216ENST00000484954 RETREG3Q86VR2 466 aa8□□□□□ -1.13
VPS50-216ENST00000484954 KDM4CQ9H3R0 1056 aa8□□□□□ -1.13
VPS50-216ENST00000484954 LIMD1Q9UGP4 676 aa8□□□□□ -1.13
VPS50-216ENST00000484954 SPTLC1O15269 473 aa7.99□□□□□ -1.13
VPS50-216ENST00000484954 TPRNQ4KMQ1 711 aa7.99□□□□□ -1.13
VPS50-216ENST00000484954 VSIG8P0DPA2 414 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 WDR4P57081 412 aaKnown RBP7.98□□□□□ -1.13
VPS50-216ENST00000484954 CSPP1Q1MSJ5 1256 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 RIC3Q7Z5B4 369 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 CABLES1Q8TDN4 633 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 BAP1Q92560 729 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 FAM117AQ9C073 453 aa7.98□□□□□ -1.13
VPS50-216ENST00000484954 TIMP2P16035 220 aa7.97□□□□□ -1.13
VPS50-216ENST00000484954 TMEM151AQ8N4L1 468 aa7.97□□□□□ -1.13
VPS50-216ENST00000484954 CCNYL3P0C7X3 344 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 HRCP23327 699 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 MTMR2Q13614 643 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 QPCTQ16769 361 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 PRR7Q8TB68 274 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 UNC93B1Q9H1C4 597 aa7.96□□□□□ -1.14
VPS50-216ENST00000484954 PLEKHG3A1L390 1219 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 CFAP99D6REC4 459 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 GDF11O95390 407 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 GJA5P36382 358 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 DIXDC1Q155Q3 683 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 C6orf118Q5T5N4 469 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 POLR3EQ9NVU0 708 aa7.95□□□□□ -1.14
VPS50-216ENST00000484954 MAN1A2O60476 641 aa7.94□□□□□ -1.14
VPS50-216ENST00000484954 ADH1CP00326 375 aa7.94□□□□□ -1.14
VPS50-216ENST00000484954 RASSF7Q02833 373 aa7.94□□□□□ -1.14
VPS50-216ENST00000484954 PPFIA3O75145 1194 aa7.93□□□□□ -1.14
VPS50-216ENST00000484954 FBXO31Q5XUX0 539 aaPredicted RBP7.93□□□□□ -1.14
VPS50-216ENST00000484954 KRTAP1-3Q8IUG1 177 aa7.93□□□□□ -1.14
VPS50-216ENST00000484954 VARSP26640 1264 aaKnown RBP7.92□□□□□ -1.14
VPS50-216ENST00000484954 ZNF511Q8NB15 262 aa7.92□□□□□ -1.14
VPS50-216ENST00000484954 ZBTB3Q9H5J0 574 aa7.92□□□□□ -1.14
VPS50-216ENST00000484954 ZFAND3Q9H8U3 227 aa7.92□□□□□ -1.14
VPS50-216ENST00000484954 LILRB3O75022 631 aa7.91□□□□□ -1.14
VPS50-216ENST00000484954 CLK2P49760 499 aaKnown RBP7.91□□□□□ -1.14
VPS50-216ENST00000484954 RTL5Q5HYW3 569 aaPredicted RBP7.91□□□□□ -1.14
VPS50-216ENST00000484954 EVA1BQ9NVM1 165 aa7.91□□□□□ -1.14
VPS50-216ENST00000484954 SPDYE5A6NIY4 337 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 PER1O15534 1290 aaPredicted RBP7.9□□□□□ -1.14
VPS50-216ENST00000484954 ZIC2O95409 532 aaPredicted RBP7.9□□□□□ -1.14
VPS50-216ENST00000484954 PRKCSHP14314 528 aaPredicted RBP7.9□□□□□ -1.14
VPS50-216ENST00000484954 KCNH2Q12809 1159 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 ARID5BQ14865 1188 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 NEUROD2Q15784 382 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 PTPRNQ16849 979 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 PROCA1Q8NCQ7 364 aaPredicted RBP7.9□□□□□ -1.14
VPS50-216ENST00000484954 CNTNAP3BQ96NU0 1288 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 KLF16Q9BXK1 252 aaPredicted RBP7.9□□□□□ -1.14
VPS50-216ENST00000484954 CNTNAP3Q9BZ76 1288 aa7.9□□□□□ -1.14
VPS50-216ENST00000484954 BRPF1P55201 1214 aaPredicted RBP7.89□□□□□ -1.15
VPS50-216ENST00000484954 KRT76Q01546 638 aa7.89□□□□□ -1.15
VPS50-216ENST00000484954 PRPF38BQ5VTL8 546 aaKnown RBP7.89□□□□□ -1.15
VPS50-216ENST00000484954 PSMG3-AS1Q96PY0 264 aa7.89□□□□□ -1.15
VPS50-216ENST00000484954 ADAMTS8Q9UP79 889 aa7.89□□□□□ -1.15
VPS50-216ENST00000484954 NUTM2BA6NNL0 878 aaPredicted RBP7.88□□□□□ -1.15
VPS50-216ENST00000484954 NUTM2EB1AL46 878 aaPredicted RBP7.88□□□□□ -1.15
VPS50-216ENST00000484954 TUSC1Q2TAM9 212 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 NUTM2DQ5VT03 806 aaPredicted RBP7.88□□□□□ -1.15
VPS50-216ENST00000484954 DESI1Q6ICB0 168 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 NUTM2AQ8IVF1 878 aaPredicted RBP7.88□□□□□ -1.15
VPS50-216ENST00000484954 MPNDQ8N594 471 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 GPR161Q8N6U8 529 aaKnown RBP7.88□□□□□ -1.15
VPS50-216ENST00000484954 ITPKCQ96DU7 683 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 DDRGK1Q96HY6 314 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 RSPH6AQ9H0K4 717 aa7.88□□□□□ -1.15
VPS50-216ENST00000484954 BMP2P12643 396 aa7.87□□□□□ -1.15
VPS50-216ENST00000484954 SH3D19Q5HYK7 790 aa7.87□□□□□ -1.15
VPS50-216ENST00000484954 LYPD8Q6UX82 237 aa7.87□□□□□ -1.15
VPS50-216ENST00000484954 FAM174AQ8TBP5 190 aa7.87□□□□□ -1.15
VPS50-216ENST00000484954 TSC1Q92574 1164 aa7.87□□□□□ -1.15
VPS50-216ENST00000484954 SKIV2LQ15477 1246 aaKnown RBP7.86□□□□□ -1.15
VPS50-216ENST00000484954 GPAT2Q6NUI2 795 aa7.86□□□□□ -1.15
VPS50-216ENST00000484954 MAP10Q9P2G4 905 aa7.86□□□□□ -1.15
VPS50-216ENST00000484954 RNF225M0QZC1 329 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms