RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 AATKQ6ZMQ8 1374 aa34.82■■■■□ 3.16
SHOX2-204ENST00000483851 SSH2Q76I76 1423 aa34.81■■■■□ 3.16
SHOX2-204ENST00000483851 TTC21BQ7Z4L5 1316 aa34.8■■■■□ 3.16
SHOX2-204ENST00000483851 PNPLA6Q8IY17 1366 aa34.8■■■■□ 3.16
SHOX2-204ENST00000483851 NUTM2FA1L443 756 aa34.8■■■■□ 3.16
SHOX2-204ENST00000483851 NEFLP07196 543 aa34.8■■■■□ 3.16
SHOX2-204ENST00000483851 COG3Q96JB2 828 aa34.79■■■■□ 3.16
SHOX2-204ENST00000483851 TTC21AQ8NDW8 1320 aa34.78■■■■□ 3.16
SHOX2-204ENST00000483851 NME9Q86XW9 330 aa34.78■■■■□ 3.16
SHOX2-204ENST00000483851 COL3A1P02461 1466 aaPredicted RBP34.78■■■■□ 3.16
SHOX2-204ENST00000483851 NGDNQ8NEJ9 315 aaKnown RBP34.73■■■■□ 3.15
SHOX2-204ENST00000483851 MAP2P11137 1827 aaKnown RBP34.72■■■■□ 3.15
SHOX2-204ENST00000483851 LMTK3Q96Q04 1460 aa34.72■■■■□ 3.15
SHOX2-204ENST00000483851 OVOS2A0A0J9YW53 1432 aa34.71■■■■□ 3.15
SHOX2-204ENST00000483851 OVOS2Q6IE36 1432 aa34.71■■■■□ 3.15
SHOX2-204ENST00000483851 POLKQ9UBT6 870 aa34.71■■■■□ 3.15
SHOX2-204ENST00000483851 NCOA3Q9Y6Q9 1424 aa34.7■■■■□ 3.15
SHOX2-204ENST00000483851 PMFBP1Q8TBY8 1022 aa34.69■■■■□ 3.14
SHOX2-204ENST00000483851 NCBP3Q53F19 620 aaKnown RBP34.69■■■■□ 3.14
SHOX2-204ENST00000483851 RUNDC1Q96C34 613 aa34.69■■■■□ 3.14
SHOX2-204ENST00000483851 ZNF521Q96K83 1311 aa34.68■■■■□ 3.14
SHOX2-204ENST00000483851 CDK12Q9NYV4 1490 aaPredicted RBP34.67■■■■□ 3.14
SHOX2-204ENST00000483851 SALL2Q9Y467 1007 aaPredicted RBP34.67■■■■□ 3.14
SHOX2-204ENST00000483851 USP31Q70CQ4 1352 aa34.66■■■■□ 3.14
SHOX2-204ENST00000483851 PROSER2Q86WR7 435 aaPredicted RBP34.66■■■■□ 3.14
SHOX2-204ENST00000483851 SENP3-EIF4A1A0A087X0R7 540 aa34.65■■■■□ 3.14
SHOX2-204ENST00000483851 DIAPH1O60610 1272 aaKnown RBP34.65■■■■□ 3.14
SHOX2-204ENST00000483851 CCDC146Q8IYE0 955 aa34.65■■■■□ 3.14
SHOX2-204ENST00000483851 APAF1O14727 1248 aa34.64■■■■□ 3.14
SHOX2-204ENST00000483851 ZRANB1Q9UGI0 708 aa34.64■■■■□ 3.14
SHOX2-204ENST00000483851 HSPA2P54652 639 aa34.63■■■■□ 3.13
SHOX2-204ENST00000483851 C14orf37Q86TY3 774 aa34.63■■■■□ 3.13
SHOX2-204ENST00000483851 PHF8Q9UPP1 1060 aa34.63■■■■□ 3.13
SHOX2-204ENST00000483851 U2AF1L5P0DN76 240 aaPredicted RBP34.62■■■■□ 3.13
SHOX2-204ENST00000483851 U2AF1Q01081 240 aaKnown RBP eCLIP34.62■■■■□ 3.13
SHOX2-204ENST00000483851 USP54Q70EL1 1684 aa34.61■■■■□ 3.13
SHOX2-204ENST00000483851 PNNQ9H307 717 aaKnown RBP34.61■■■■□ 3.13
SHOX2-204ENST00000483851 IQSEC2Q5JU85 1478 aa34.6■■■■□ 3.13
SHOX2-204ENST00000483851 C19orf44Q9H6X5 657 aa34.6■■■■□ 3.13
SHOX2-204ENST00000483851 LRRC7Q96NW7 1537 aa34.59■■■■□ 3.13
SHOX2-204ENST00000483851 STRCQ7RTU9 1775 aa34.58■■■■□ 3.13
SHOX2-204ENST00000483851 GOLGA2Q08379 1002 aa34.57■■■■□ 3.12
SHOX2-204ENST00000483851 RBM33Q96EV2 1170 aaKnown RBP34.57■■■■□ 3.12
SHOX2-204ENST00000483851 DCCP43146 1447 aa34.57■■■■□ 3.12
SHOX2-204ENST00000483851 STRCP1A6NGW2 1772 aa34.56■■■■□ 3.12
SHOX2-204ENST00000483851 PIK3C2AO00443 1686 aa34.56■■■■□ 3.12
SHOX2-204ENST00000483851 ERICH6BQ5W0A0 696 aa34.55■■■■□ 3.12
SHOX2-204ENST00000483851 RNF123Q5XPI4 1314 aa34.55■■■■□ 3.12
SHOX2-204ENST00000483851 EMILIN1Q9Y6C2 1016 aa34.54■■■■□ 3.12
SHOX2-204ENST00000483851 U2SURPO15042 1029 aaKnown RBP34.54■■■■□ 3.12
SHOX2-204ENST00000483851 CCDC27Q2M243 656 aa34.53■■■■□ 3.12
SHOX2-204ENST00000483851 CDCA7LQ96GN5 454 aa34.53■■■■□ 3.12
SHOX2-204ENST00000483851 TCP11L2Q8N4U5 519 aa34.52■■■■□ 3.12
SHOX2-204ENST00000483851 PPM1GO15355 546 aaPredicted RBP34.51■■■■□ 3.12
SHOX2-204ENST00000483851 FBLN1P23142 703 aa34.51■■■■□ 3.12
SHOX2-204ENST00000483851 FCHSD2O94868 740 aa34.5■■■■□ 3.11
SHOX2-204ENST00000483851 ESCO1Q5FWF5 840 aa34.5■■■■□ 3.11
SHOX2-204ENST00000483851 PHF23Q9BUL5 403 aaPredicted RBP34.5■■■■□ 3.11
SHOX2-204ENST00000483851 KIF1AQ12756 1690 aa34.5■■■■□ 3.11
SHOX2-204ENST00000483851 TMEM94Q12767 1356 aa34.5■■■■□ 3.11
SHOX2-204ENST00000483851 PLEKHF1Q96S99 279 aa34.5■■■■□ 3.11
SHOX2-204ENST00000483851 IL13P35225 146 aa34.48■■■■□ 3.11
SHOX2-204ENST00000483851 SLFN5Q08AF3 891 aa34.47■■■■□ 3.11
SHOX2-204ENST00000483851 RRS1Q15050 365 aaKnown RBP34.47■■■■□ 3.11
SHOX2-204ENST00000483851 TRMT2AQ8IZ69 625 aaKnown RBP34.46■■■■□ 3.11
SHOX2-204ENST00000483851 WWC1Q8IX03 1113 aa34.46■■■■□ 3.11
SHOX2-204ENST00000483851 C1orf167Q5SNV9 1468 aa34.45■■■■□ 3.11
SHOX2-204ENST00000483851 E9PSI1 815 aa34.44■■■■□ 3.1
SHOX2-204ENST00000483851 KIF24Q5T7B8 1368 aa34.44■■■■□ 3.1
SHOX2-204ENST00000483851 NLRP6P59044 892 aa34.44■■■■□ 3.1
SHOX2-204ENST00000483851 DUSP27Q5VZP5 1158 aa34.44■■■■□ 3.1
SHOX2-204ENST00000483851 RCAN3Q9UKA8 241 aa34.44■■■■□ 3.1
SHOX2-204ENST00000483851 MARF1Q9Y4F3 1742 aaKnown RBP34.43■■■■□ 3.1
SHOX2-204ENST00000483851 MAPK8IP3Q9UPT6 1336 aa34.43■■■■□ 3.1
SHOX2-204ENST00000483851 PSME1Q06323 249 aa34.43■■■■□ 3.1
SHOX2-204ENST00000483851 WDR63Q8IWG1 891 aa34.43■■■■□ 3.1
SHOX2-204ENST00000483851 TSHZ2Q9NRE2 1034 aa34.43■■■■□ 3.1
SHOX2-204ENST00000483851 ATF3P18847 181 aa34.41■■■■□ 3.1
SHOX2-204ENST00000483851 ABTB2Q8N961 1025 aa34.41■■■■□ 3.1
SHOX2-204ENST00000483851 SBNO1A3KN83 1393 aa34.4■■■■□ 3.1
SHOX2-204ENST00000483851 MST1RQ04912 1400 aa34.39■■■■□ 3.1
SHOX2-204ENST00000483851 CADPS2Q86UW7 1296 aa34.39■■■■□ 3.1
SHOX2-204ENST00000483851 RSPH6AQ9H0K4 717 aa34.39■■■■□ 3.1
SHOX2-204ENST00000483851 PEAK1Q9H792 1746 aa34.38■■■■□ 3.09
SHOX2-204ENST00000483851 NEFMP07197 916 aa34.37■■■■□ 3.09
SHOX2-204ENST00000483851 ORAI2Q96SN7 254 aa34.37■■■■□ 3.09
SHOX2-204ENST00000483851 PAK3O75914 559 aaPredicted RBP34.37■■■■□ 3.09
SHOX2-204ENST00000483851 FLT4P35916 1363 aa34.36■■■■□ 3.09
SHOX2-204ENST00000483851 MSH6P52701 1360 aa34.36■■■■□ 3.09
SHOX2-204ENST00000483851 MAP3K19Q56UN5 1328 aa34.35■■■■□ 3.09
SHOX2-204ENST00000483851 TMPOP42166 694 aaKnown RBP34.35■■■■□ 3.09
SHOX2-204ENST00000483851 IRX6P78412 446 aaPredicted RBP34.33■■■■□ 3.09
SHOX2-204ENST00000483851 RRP7AQ9Y3A4 280 aaKnown RBP34.33■■■■□ 3.09
SHOX2-204ENST00000483851 XIRP1Q702N8 1843 aaKnown RBP34.32■■■■□ 3.09
SHOX2-204ENST00000483851 NEUROD2Q15784 382 aa34.32■■■■□ 3.08
SHOX2-204ENST00000483851 DMRT2Q9Y5R5 561 aa34.32■■■■□ 3.08
SHOX2-204ENST00000483851 TRPM3Q9HCF6 1732 aaPredicted RBP34.31■■■■□ 3.08
SHOX2-204ENST00000483851 PRKAR2BP31323 418 aa34.31■■■■□ 3.08
SHOX2-204ENST00000483851 EIF4A2Q14240 407 aaKnown RBP34.31■■■■□ 3.08
SHOX2-204ENST00000483851 FOXO3O43524 673 aa34.3■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms