RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SSH2Q76I76 1423 aa16.77■□□□□ 0.27
SDC1-206ENST00000482879 PHLPP1O60346 1717 aa16.76■□□□□ 0.27
SDC1-206ENST00000482879 SOS2Q07890 1332 aaPredicted RBP16.76■□□□□ 0.27
SDC1-206ENST00000482879 PXDNQ92626 1479 aa16.76■□□□□ 0.27
SDC1-206ENST00000482879 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
SDC1-206ENST00000482879 NRKQ7Z2Y5 1582 aa16.76■□□□□ 0.27
SDC1-206ENST00000482879 TRPM3Q9HCF6 1732 aaPredicted RBP16.76■□□□□ 0.27
SDC1-206ENST00000482879 CGNL1Q0VF96 1302 aa16.75■□□□□ 0.27
SDC1-206ENST00000482879 TTC21AQ8NDW8 1320 aa16.75■□□□□ 0.27
SDC1-206ENST00000482879 SBNO1A3KN83 1393 aa16.75■□□□□ 0.27
SDC1-206ENST00000482879 LMOD2Q6P5Q4 547 aa16.74■□□□□ 0.27
SDC1-206ENST00000482879 KIF20BQ96Q89 1820 aa16.74■□□□□ 0.27
SDC1-206ENST00000482879 FYB1O15117 783 aa16.73■□□□□ 0.27
SDC1-206ENST00000482879 CNGB1Q14028 1251 aaPredicted RBP16.73■□□□□ 0.27
SDC1-206ENST00000482879 NME9Q86XW9 330 aa16.73■□□□□ 0.27
SDC1-206ENST00000482879 ABTB2Q8N961 1025 aa16.73■□□□□ 0.27
SDC1-206ENST00000482879 SPATA31A3Q5VYP0 1347 aa16.72■□□□□ 0.27
SDC1-206ENST00000482879 AMER1Q5JTC6 1135 aaPredicted RBP16.72■□□□□ 0.27
SDC1-206ENST00000482879 CC2D1BQ5T0F9 858 aaKnown RBP16.71■□□□□ 0.27
SDC1-206ENST00000482879 NUTM2GQ5VZR2 741 aa16.71■□□□□ 0.27
SDC1-206ENST00000482879 LRRC59Q96AG4 307 aaKnown RBP16.71■□□□□ 0.27
SDC1-206ENST00000482879 GGNBP2Q9H3C7 697 aa16.71■□□□□ 0.27
SDC1-206ENST00000482879 ZRANB1Q9UGI0 708 aa16.71■□□□□ 0.27
SDC1-206ENST00000482879 ALS2Q96Q42 1657 aa16.71■□□□□ 0.27
SDC1-206ENST00000482879 TNS3Q68CZ2 1445 aa16.7■□□□□ 0.26
SDC1-206ENST00000482879 PIK3C2AO00443 1686 aa16.7■□□□□ 0.26
SDC1-206ENST00000482879 NLRP6P59044 892 aa16.7■□□□□ 0.26
SDC1-206ENST00000482879 COL16A1Q07092 1604 aaPredicted RBP16.7■□□□□ 0.26
SDC1-206ENST00000482879 DIEXFQ68CQ4 756 aaKnown RBP16.69■□□□□ 0.26
SDC1-206ENST00000482879 FBXO41Q8TF61 875 aa16.69■□□□□ 0.26
SDC1-206ENST00000482879 ARHGEF10O15013 1369 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 NSD2O96028 1365 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 NPC1L1Q9UHC9 1359 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 HSPA1LP34931 641 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 NLRP13Q86W25 1043 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 COG3Q96JB2 828 aa16.68■□□□□ 0.26
SDC1-206ENST00000482879 ANKRD26Q9UPS8 1709 aa16.67■□□□□ 0.26
SDC1-206ENST00000482879 USP31Q70CQ4 1352 aa16.67■□□□□ 0.26
SDC1-206ENST00000482879 PLEKHG5O94827 1062 aa16.67■□□□□ 0.26
SDC1-206ENST00000482879 MORC1Q86VD1 984 aa16.67■□□□□ 0.26
SDC1-206ENST00000482879 MARF1Q9Y4F3 1742 aaKnown RBP16.65■□□□□ 0.26
SDC1-206ENST00000482879 OVOS2A0A0J9YW53 1432 aa16.64■□□□□ 0.25
SDC1-206ENST00000482879 OVOS2Q6IE36 1432 aa16.64■□□□□ 0.25
SDC1-206ENST00000482879 USP54Q70EL1 1684 aa16.64■□□□□ 0.25
SDC1-206ENST00000482879 ANP32CO43423 234 aa16.63■□□□□ 0.25
SDC1-206ENST00000482879 TNNT2P45379 298 aaPredicted RBP16.63■□□□□ 0.25
SDC1-206ENST00000482879 CABLES1Q8TDN4 633 aa16.63■□□□□ 0.25
SDC1-206ENST00000482879 PNPLA6Q8IY17 1366 aa16.63■□□□□ 0.25
SDC1-206ENST00000482879 MAP2P11137 1827 aaKnown RBP16.62■□□□□ 0.25
SDC1-206ENST00000482879 SOX12O15370 315 aa16.62■□□□□ 0.25
SDC1-206ENST00000482879 USP19O94966 1318 aa16.62■□□□□ 0.25
SDC1-206ENST00000482879 MED1Q15648 1581 aaPredicted RBP16.61■□□□□ 0.25
SDC1-206ENST00000482879 RALBP1Q15311 655 aa16.61■□□□□ 0.25
SDC1-206ENST00000482879 PRKRIP1Q9H875 184 aaPredicted RBP16.61■□□□□ 0.25
SDC1-206ENST00000482879 JCADQ9P266 1359 aa16.61■□□□□ 0.25
SDC1-206ENST00000482879 COL22A1Q8NFW1 1626 aaPredicted RBP16.6■□□□□ 0.25
SDC1-206ENST00000482879 SHPRHQ149N8 1683 aa16.6■□□□□ 0.25
SDC1-206ENST00000482879 GCP02774 474 aa16.6■□□□□ 0.25
SDC1-206ENST00000482879 FBLN1P23142 703 aa16.6■□□□□ 0.25
SDC1-206ENST00000482879 HAP1P54257 671 aaPredicted RBP16.6■□□□□ 0.25
SDC1-206ENST00000482879 KCNH5Q8NCM2 988 aa16.6■□□□□ 0.25
SDC1-206ENST00000482879 PARD3Q8TEW0 1356 aa16.6■□□□□ 0.25
SDC1-206ENST00000482879 CRYBG1Q9Y4K1 1723 aa16.59■□□□□ 0.25
SDC1-206ENST00000482879 SLIT3O75094 1523 aa16.59■□□□□ 0.25
SDC1-206ENST00000482879 PHRF1Q9P1Y6 1649 aaKnown RBP16.59■□□□□ 0.25
SDC1-206ENST00000482879 ABCA3Q99758 1704 aa16.58■□□□□ 0.24
SDC1-206ENST00000482879 ZC3H6P61129 1189 aaKnown RBP16.57■□□□□ 0.24
SDC1-206ENST00000482879 NUTM2BA6NNL0 878 aaPredicted RBP16.56■□□□□ 0.24
SDC1-206ENST00000482879 NUTM2EB1AL46 878 aaPredicted RBP16.56■□□□□ 0.24
SDC1-206ENST00000482879 NUTM2AQ8IVF1 878 aaPredicted RBP16.56■□□□□ 0.24
SDC1-206ENST00000482879 NFAT5O94916 1531 aa16.55■□□□□ 0.24
SDC1-206ENST00000482879 AATKQ6ZMQ8 1374 aa16.55■□□□□ 0.24
SDC1-206ENST00000482879 ZBTB7CA1YPR0 619 aa16.55■□□□□ 0.24
SDC1-206ENST00000482879 PPP2R1AP30153 589 aa16.55■□□□□ 0.24
SDC1-206ENST00000482879 RRS1Q15050 365 aaKnown RBP16.55■□□□□ 0.24
SDC1-206ENST00000482879 LTN1O94822 1766 aa16.55■□□□□ 0.24
SDC1-206ENST00000482879 MYBBP1AQ9BQG0 1328 aaKnown RBP16.54■□□□□ 0.24
SDC1-206ENST00000482879 POLKQ9UBT6 870 aa16.54■□□□□ 0.24
SDC1-206ENST00000482879 MAP3K19Q56UN5 1328 aa16.53■□□□□ 0.24
SDC1-206ENST00000482879 SPATA31A6Q5VVP1 1343 aa16.53■□□□□ 0.24
SDC1-206ENST00000482879 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
SDC1-206ENST00000482879 ARHGEF25Q86VW2 580 aa16.53■□□□□ 0.24
SDC1-206ENST00000482879 EMILIN1Q9Y6C2 1016 aa16.53■□□□□ 0.24
SDC1-206ENST00000482879 AMPHP49418 695 aa16.52■□□□□ 0.24
SDC1-206ENST00000482879 MTHFSP49914 203 aa16.52■□□□□ 0.24
SDC1-206ENST00000482879 KIAA0232Q92628 1395 aa16.51■□□□□ 0.23
SDC1-206ENST00000482879 ADAMTS2O95450 1211 aa16.51■□□□□ 0.23
SDC1-206ENST00000482879 MIER1Q8N108 512 aa16.51■□□□□ 0.23
SDC1-206ENST00000482879 CPDO75976 1380 aa16.51■□□□□ 0.23
SDC1-206ENST00000482879 CHRNA2Q15822 529 aa16.5■□□□□ 0.23
SDC1-206ENST00000482879 PRDM11Q9NQV5 511 aa16.5■□□□□ 0.23
SDC1-206ENST00000482879 RGPD5Q99666 1765 aa16.49■□□□□ 0.23
SDC1-206ENST00000482879 PEAK1Q9H792 1746 aa16.48■□□□□ 0.23
SDC1-206ENST00000482879 FAM83GA6ND36 823 aa16.48■□□□□ 0.23
SDC1-206ENST00000482879 IP6K1Q92551 441 aa16.48■□□□□ 0.23
SDC1-206ENST00000482879 COL18A1P39060 1754 aa16.48■□□□□ 0.23
SDC1-206ENST00000482879 SMG6Q86US8 1419 aaKnown RBP16.47■□□□□ 0.23
SDC1-206ENST00000482879 HOXC9P31274 260 aa16.47■□□□□ 0.23
SDC1-206ENST00000482879 CFAP53Q96M91 514 aa16.47■□□□□ 0.23
SDC1-206ENST00000482879 FLT4P35916 1363 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms