RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.96□□□□□ -0.171e-6■■■■□ 23.9
SMPD4-218ENST00000482171 TAF7LQ5H9L4 462 aa13.96□□□□□ -0.17
SMPD4-218ENST00000482171 DUSP27Q5VZP5 1158 aa13.96□□□□□ -0.17
SMPD4-218ENST00000482171 MCM10Q7L590 875 aa13.96□□□□□ -0.17
SMPD4-218ENST00000482171 FOXO3O43524 673 aa13.96□□□□□ -0.18
SMPD4-218ENST00000482171 ABCA8O94911 1581 aa13.96□□□□□ -0.18
SMPD4-218ENST00000482171 GORABQ5T7V8 394 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 GAS2L2Q8NHY3 880 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 NCKAP5LQ9HCH0 1330 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 ZRANB1Q9UGI0 708 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 ERCC6L2Q5T890 1561 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 GCC2Q8IWJ2 1684 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 FYB1O15117 783 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 ATF7IPQ6VMQ6 1270 aa13.95□□□□□ -0.18
SMPD4-218ENST00000482171 USHBP1Q8N6Y0 703 aa13.94□□□□□ -0.18
SMPD4-218ENST00000482171 NFE2L2Q16236 605 aa13.94□□□□□ -0.18
SMPD4-218ENST00000482171 FOXD4L5Q5VV16 416 aaPredicted RBP13.94□□□□□ -0.18
SMPD4-218ENST00000482171 FOXD4L4Q8WXT5 416 aaPredicted RBP13.94□□□□□ -0.18
SMPD4-218ENST00000482171 CFAP44Q96MT7 982 aa13.93□□□□□ -0.18
SMPD4-218ENST00000482171 SSH1Q8WYL5 1049 aa13.93□□□□□ -0.18
SMPD4-218ENST00000482171 PARD3Q8TEW0 1356 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 TNRQ92752 1358 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 ATP7AQ04656 1500 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 ZNF530Q6P9A1 599 aaPredicted RBP13.92□□□□□ -0.18
SMPD4-218ENST00000482171 STRN4Q9NRL3 753 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 RARSP54136 660 aaKnown RBP13.92□□□□□ -0.18
SMPD4-218ENST00000482171 NEXNQ0ZGT2 675 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 HDAC5Q9UQL6 1122 aa13.92□□□□□ -0.18
SMPD4-218ENST00000482171 ACEP12821 1306 aa13.91□□□□□ -0.18
SMPD4-218ENST00000482171 DDX11L8A8MPP1 907 aa13.91□□□□□ -0.18
SMPD4-218ENST00000482171 AAMPQ13685 434 aa13.91□□□□□ -0.18
SMPD4-218ENST00000482171 MVPQ14764 893 aaKnown RBP13.91□□□□□ -0.18
SMPD4-218ENST00000482171 ARHGEF12Q9NZN5 1544 aa13.91□□□□□ -0.18
SMPD4-218ENST00000482171 FAM83GA6ND36 823 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 HDGFL1Q5TGJ6 251 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 TMEM57Q8N5G2 664 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 GPATCH3Q96I76 525 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 FAM43AQ8N2R8 423 aa13.9□□□□□ -0.18
SMPD4-218ENST00000482171 CHD1O14646 1710 aa13.89□□□□□ -0.19
SMPD4-218ENST00000482171 PLEKHO1Q53GL0 409 aaPredicted RBP13.89□□□□□ -0.19
SMPD4-218ENST00000482171 DDX49Q9Y6V7 483 aaKnown RBP13.89□□□□□ -0.19
SMPD4-218ENST00000482171 UHRF1BP1Q6BDS2 1440 aa13.89□□□□□ -0.19
SMPD4-218ENST00000482171 FOXD4L6Q3SYB3 417 aaPredicted RBP13.89□□□□□ -0.19
SMPD4-218ENST00000482171 FOXD4L3Q6VB84 417 aaPredicted RBP13.89□□□□□ -0.19
SMPD4-218ENST00000482171 PHF8Q9UPP1 1060 aa13.89□□□□□ -0.19
SMPD4-218ENST00000482171 UHRF1BP1LA0JNW5 1464 aa13.89□□□□□ -0.19
SMPD4-218ENST00000482171 UBTFL1P0CB47 393 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-218ENST00000482171 RIC3Q7Z5B4 369 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 CCDC30Q5VVM6 783 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 PKNOX2Q96KN3 472 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 SAMD9LQ8IVG5 1584 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 RIMS2Q9UQ26 1411 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 TTC37Q6PGP7 1564 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 HSP90AB2PQ58FF8 381 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 CHMP5Q9NZZ3 219 aa13.88□□□□□ -0.19
SMPD4-218ENST00000482171 DDX58O95786 925 aaKnown RBP13.87□□□□□ -0.19
SMPD4-218ENST00000482171 PTMSP20962 102 aa13.87□□□□□ -0.19
SMPD4-218ENST00000482171 GTF2E1P29083 439 aaPredicted RBP13.87□□□□□ -0.19
SMPD4-218ENST00000482171 SPATA31E1Q6ZUB1 1445 aa13.87□□□□□ -0.19
SMPD4-218ENST00000482171 ASXL1Q8IXJ9 1541 aa13.87□□□□□ -0.19
SMPD4-218ENST00000482171 FAM13BQ9NYF5 915 aa13.87□□□□□ -0.19
SMPD4-218ENST00000482171 CHAF1AQ13111 956 aaPredicted RBP13.86□□□□□ -0.19
SMPD4-218ENST00000482171 MAST1Q9Y2H9 1570 aa13.86□□□□□ -0.19
SMPD4-218ENST00000482171 C22orf23Q9BZE7 217 aa13.86□□□□□ -0.19
SMPD4-218ENST00000482171 ANO2Q9NQ90 1003 aa13.86□□□□□ -0.19
SMPD4-218ENST00000482171 ANKRD36BQ8N2N9 1353 aa13.86□□□□□ -0.19
SMPD4-218ENST00000482171 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
SMPD4-218ENST00000482171 SURF6O75683 361 aaKnown RBP13.85□□□□□ -0.19
SMPD4-218ENST00000482171 CDK11BP21127 795 aaKnown RBP13.85□□□□□ -0.19
SMPD4-218ENST00000482171 DDX54Q8TDD1 881 aaKnown RBP13.85□□□□□ -0.19
SMPD4-218ENST00000482171 ZMYM3Q14202 1370 aa13.85□□□□□ -0.19
SMPD4-218ENST00000482171 NKTRP30414 1462 aaKnown RBP13.85□□□□□ -0.19
SMPD4-218ENST00000482171 KIAA2012Q0VF49 1180 aa13.85□□□□□ -0.19
SMPD4-218ENST00000482171 PRDM11Q9NQV5 511 aa13.85□□□□□ -0.19
SMPD4-218ENST00000482171 YEATS2Q9ULM3 1422 aa13.85□□□□□ -0.19
SMPD4-218ENST00000482171 ST18O60284 1047 aa13.84□□□□□ -0.19
SMPD4-218ENST00000482171 COL17A1Q9UMD9 1497 aaPredicted RBP13.84□□□□□ -0.19
SMPD4-218ENST00000482171 IFIT2P09913 472 aaKnown RBP13.84□□□□□ -0.19
SMPD4-218ENST00000482171 PLEKHH1Q9ULM0 1364 aa13.84□□□□□ -0.19
SMPD4-218ENST00000482171 ZRSR1Q15695 479 aaKnown RBP13.84□□□□□ -0.19
SMPD4-218ENST00000482171 TOM1L2Q6ZVM7 507 aa13.84□□□□□ -0.19
SMPD4-218ENST00000482171 AEBP1Q8IUX7 1158 aa13.84□□□□□ -0.19
SMPD4-218ENST00000482171 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
SMPD4-218ENST00000482171 CT47B1P0C2W7 299 aaPredicted RBP13.83□□□□□ -0.2
SMPD4-218ENST00000482171 TATP17735 454 aaPredicted RBP13.83□□□□□ -0.2
SMPD4-218ENST00000482171 DIAPH3Q9NSV4 1193 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 POLKQ9UBT6 870 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 TRAK2O60296 914 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 G3BP1Q13283 466 aaKnown RBP eCLIP13.83□□□□□ -0.24e-7■□□□□ 10.4
SMPD4-218ENST00000482171 TNNQ9UQP3 1299 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 NPATQ14207 1427 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 A0A1W2PP64 1363 aa13.83□□□□□ -0.2
SMPD4-218ENST00000482171 MYO5CQ9NQX4 1742 aa13.82□□□□□ -0.2
SMPD4-218ENST00000482171 TRIM27P14373 513 aa13.82□□□□□ -0.2
SMPD4-218ENST00000482171 F6X3S4 739 aa13.82□□□□□ -0.2
SMPD4-218ENST00000482171 MYL6BP14649 208 aa13.82□□□□□ -0.2
SMPD4-218ENST00000482171 ARHGEF5Q12774 1597 aa13.82□□□□□ -0.2
SMPD4-218ENST00000482171 GNAI3P08754 354 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms