RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 ZNF428Q96B54 188 aa24.1■■□□□ 1.45
CCM2-214ENST00000481194 CCDC30Q5VVM6 783 aa24.1■■□□□ 1.45
CCM2-214ENST00000481194 EIF2S2P20042 333 aaKnown RBP24.1■■□□□ 1.45
CCM2-214ENST00000481194 TAF7LQ5H9L4 462 aa24.09■■□□□ 1.45
CCM2-214ENST00000481194 KRT28Q7Z3Y7 464 aa24.09■■□□□ 1.45
CCM2-214ENST00000481194 PRDM15P57071 1507 aaPredicted RBP24.09■■□□□ 1.45
CCM2-214ENST00000481194 TOM1L2Q6ZVM7 507 aa24.08■■□□□ 1.45
CCM2-214ENST00000481194 PARD3Q8TEW0 1356 aa24.08■■□□□ 1.45
CCM2-214ENST00000481194 INO80Q9ULG1 1556 aaPredicted RBP24.08■■□□□ 1.45
CCM2-214ENST00000481194 ZFYVE9O95405 1425 aa24.08■■□□□ 1.44
CCM2-214ENST00000481194 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.44
CCM2-214ENST00000481194 NPC1L1Q9UHC9 1359 aa24.07■■□□□ 1.44
CCM2-214ENST00000481194 PLEKHG1Q9ULL1 1385 aa24.07■■□□□ 1.44
CCM2-214ENST00000481194 ZNF530Q6P9A1 599 aaPredicted RBP24.07■■□□□ 1.44
CCM2-214ENST00000481194 LMTK2Q8IWU2 1503 aa24.07■■□□□ 1.44
CCM2-214ENST00000481194 KCNJ4P48050 445 aa24.07■■□□□ 1.44
CCM2-214ENST00000481194 SBNO2Q9Y2G9 1366 aa24.06■■□□□ 1.44
CCM2-214ENST00000481194 PLIN1O60240 522 aa24.06■■□□□ 1.44
CCM2-214ENST00000481194 C19orf44Q9H6X5 657 aa24.06■■□□□ 1.44
CCM2-214ENST00000481194 AMER1Q5JTC6 1135 aaPredicted RBP24.06■■□□□ 1.44
CCM2-214ENST00000481194 TMX4Q9H1E5 349 aaPredicted RBP24.06■■□□□ 1.44
CCM2-214ENST00000481194 NPHP3Q7Z494 1330 aa24.05■■□□□ 1.44
CCM2-214ENST00000481194 EXOC6Q8TAG9 804 aa24.05■■□□□ 1.44
CCM2-214ENST00000481194 COG6Q9Y2V7 657 aa24.05■■□□□ 1.44
CCM2-214ENST00000481194 FKBP5Q13451 457 aaPredicted RBP24.05■■□□□ 1.44
CCM2-214ENST00000481194 XPCQ01831 940 aaPredicted RBP24.05■■□□□ 1.44
CCM2-214ENST00000481194 NCKAP5LQ9HCH0 1330 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 TMPOP42166 694 aaKnown RBP24.04■■□□□ 1.44
CCM2-214ENST00000481194 AMOTQ4VCS5 1084 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 KCNA6P17658 529 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 CHMP3Q9Y3E7 222 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 FOXO3O43524 673 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 STRN4Q9NRL3 753 aa24.04■■□□□ 1.44
CCM2-214ENST00000481194 UGGT1Q9NYU2 1555 aa24.03■■□□□ 1.44
CCM2-214ENST00000481194 CCDC184Q52MB2 194 aa24.03■■□□□ 1.44
CCM2-214ENST00000481194 APBB1O00213 710 aa24.03■■□□□ 1.44
CCM2-214ENST00000481194 TWISTNBQ3B726 338 aaPredicted RBP24.03■■□□□ 1.44
CCM2-214ENST00000481194 PIK3C2GO75747 1445 aa24.02■■□□□ 1.44
CCM2-214ENST00000481194 EXOSC9Q06265 439 aaKnown RBP24.02■■□□□ 1.44
CCM2-214ENST00000481194 GOLGA6L22H0YM25 854 aa24.02■■□□□ 1.44
CCM2-214ENST00000481194 PDE3AQ14432 1141 aa24.02■■□□□ 1.44
CCM2-214ENST00000481194 KIAA1211Q6ZU35 1233 aa24.02■■□□□ 1.44
CCM2-214ENST00000481194 ANP32BQ92688 251 aaKnown RBP24.01■■□□□ 1.43
CCM2-214ENST00000481194 C9orf78Q9NZ63 289 aaPredicted RBP24.01■■□□□ 1.43
CCM2-214ENST00000481194 SPHKAPQ2M3C7 1700 aa24.01■■□□□ 1.43
CCM2-214ENST00000481194 GNAT3A8MTJ3 354 aa24■■□□□ 1.43
CCM2-214ENST00000481194 CDCA7LQ96GN5 454 aa24■■□□□ 1.43
CCM2-214ENST00000481194 SYTL4Q96C24 671 aaPredicted RBP24■■□□□ 1.43
CCM2-214ENST00000481194 POLR3AO14802 1390 aaPredicted RBP24■■□□□ 1.43
CCM2-214ENST00000481194 FYB1O15117 783 aa24■■□□□ 1.43
CCM2-214ENST00000481194 KDM5AP29375 1690 aaKnown RBP24■■□□□ 1.43
CCM2-214ENST00000481194 WWC1Q8IX03 1113 aa24■■□□□ 1.43
CCM2-214ENST00000481194 EMILIN1Q9Y6C2 1016 aa24■■□□□ 1.43
CCM2-214ENST00000481194 GORABQ5T7V8 394 aa23.99■■□□□ 1.43
CCM2-214ENST00000481194 ANP32EQ9BTT0 268 aa23.98■■□□□ 1.43
CCM2-214ENST00000481194 ZC3H6P61129 1189 aaKnown RBP23.98■■□□□ 1.43
CCM2-214ENST00000481194 SLFN5Q08AF3 891 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 EDC4Q6P2E9 1401 aaKnown RBP23.97■■□□□ 1.43
CCM2-214ENST00000481194 IFT57Q9NWB7 429 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 A0A1W2PP64 1363 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 DIP2CQ9Y2E4 1556 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 GTF2E1P29083 439 aaPredicted RBP23.97■■□□□ 1.43
CCM2-214ENST00000481194 CABP4P57796 275 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 HSCBQ8IWL3 235 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 HMGB2P26583 209 aaKnown RBP23.97■■□□□ 1.43
CCM2-214ENST00000481194 PLA2R1Q13018 1463 aa23.97■■□□□ 1.43
CCM2-214ENST00000481194 HSP90AB4PQ58FF6 505 aa23.96■■□□□ 1.43
CCM2-214ENST00000481194 NCLP19338 710 aaKnown RBP23.96■■□□□ 1.43
CCM2-214ENST00000481194 RNF17Q9BXT8 1623 aaKnown RBP23.96■■□□□ 1.43
CCM2-214ENST00000481194 AGLP35573 1532 aa23.95■■□□□ 1.42
CCM2-214ENST00000481194 KDM5CP41229 1560 aa23.95■■□□□ 1.42
CCM2-214ENST00000481194 CFAP65Q6ZU64 1925 aaKnown RBP23.94■■□□□ 1.42
CCM2-214ENST00000481194 DIP2BQ9P265 1576 aa23.94■■□□□ 1.42
CCM2-214ENST00000481194 CLTCL1P53675 1640 aa23.94■■□□□ 1.42
CCM2-214ENST00000481194 PIP4K2BP78356 416 aa23.94■■□□□ 1.42
CCM2-214ENST00000481194 RIC3Q7Z5B4 369 aa23.93■■□□□ 1.42
CCM2-214ENST00000481194 GNAI3P08754 354 aa23.93■■□□□ 1.42
CCM2-214ENST00000481194 NECTIN2Q92692 538 aa23.93■■□□□ 1.42
CCM2-214ENST00000481194 ZC3H13Q5T200 1668 aaKnown RBP23.93■■□□□ 1.42
CCM2-214ENST00000481194 FGD1P98174 961 aa23.92■■□□□ 1.42
CCM2-214ENST00000481194 RBM33Q96EV2 1170 aaKnown RBP23.92■■□□□ 1.42
CCM2-214ENST00000481194 IL16Q14005 1332 aa23.91■■□□□ 1.42
CCM2-214ENST00000481194 NUTM2BA6NNL0 878 aaPredicted RBP23.91■■□□□ 1.42
CCM2-214ENST00000481194 NUTM2EB1AL46 878 aaPredicted RBP23.91■■□□□ 1.42
CCM2-214ENST00000481194 NUTM2AQ8IVF1 878 aaPredicted RBP23.91■■□□□ 1.42
CCM2-214ENST00000481194 CAMSAP1Q5T5Y3 1602 aa23.91■■□□□ 1.42
CCM2-214ENST00000481194 HSP90B1P14625 803 aaKnown RBP23.9■■□□□ 1.42
CCM2-214ENST00000481194 PIK3R4Q99570 1358 aa23.9■■□□□ 1.42
CCM2-214ENST00000481194 TSR2Q969E8 191 aaKnown RBP23.9■■□□□ 1.42
CCM2-214ENST00000481194 TOM1O60784 492 aa23.9■■□□□ 1.42
CCM2-214ENST00000481194 ANKRD45Q5TZF3 282 aa23.89■■□□□ 1.42
CCM2-214ENST00000481194 USP35Q9P2H5 1018 aa23.89■■□□□ 1.42
CCM2-214ENST00000481194 MAP3K4Q9Y6R4 1608 aa23.89■■□□□ 1.41
CCM2-214ENST00000481194 HDGFL1Q5TGJ6 251 aa23.89■■□□□ 1.41
CCM2-214ENST00000481194 SYNMO15061 1565 aa23.89■■□□□ 1.41
CCM2-214ENST00000481194 NKTRP30414 1462 aaKnown RBP23.88■■□□□ 1.41
CCM2-214ENST00000481194 CCT4P50991 539 aaKnown RBP23.88■■□□□ 1.41
CCM2-214ENST00000481194 FLT4P35916 1363 aa23.88■■□□□ 1.41
CCM2-214ENST00000481194 LTKP29376 864 aa23.88■■□□□ 1.41
CCM2-214ENST00000481194 TRIM6-TRIM34B2RNG4 842 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms