RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 HRCP23327 699 aa9.89□□□□□ -0.83
USP48-208ENST00000479177 AFAP1Q8N556 730 aa9.89□□□□□ -0.83
USP48-208ENST00000479177 SEPT9Q9UHD8 586 aaPredicted RBP9.89□□□□□ -0.83
USP48-208ENST00000479177 ANKRD50Q9ULJ7 1429 aa9.89□□□□□ -0.83
USP48-208ENST00000479177 KCNC4Q03721 635 aa9.88□□□□□ -0.83
USP48-208ENST00000479177 TYW1BQ6NUM6 668 aa9.88□□□□□ -0.83
USP48-208ENST00000479177 LAPTM4BQ86VI4 370 aa9.88□□□□□ -0.83
USP48-208ENST00000479177 ERBINQ96RT1 1412 aa9.88□□□□□ -0.83
USP48-208ENST00000479177 DIP2CQ9Y2E4 1556 aa9.88□□□□□ -0.83
USP48-208ENST00000479177 COL17A1Q9UMD9 1497 aaPredicted RBP9.87□□□□□ -0.83
USP48-208ENST00000479177 OSBPP22059 807 aa9.87□□□□□ -0.83
USP48-208ENST00000479177 UNC13BO14795 1591 aa9.87□□□□□ -0.83
USP48-208ENST00000479177 DHX57Q6P158 1386 aaKnown RBP9.87□□□□□ -0.83
USP48-208ENST00000479177 EIF2AK4Q9P2K8 1649 aaKnown RBP9.86□□□□□ -0.83
USP48-208ENST00000479177 TSR1Q2NL82 804 aaKnown RBP9.86□□□□□ -0.83
USP48-208ENST00000479177 EPAS1Q99814 870 aa9.86□□□□□ -0.83
USP48-208ENST00000479177 ARHGEF40Q8TER5 1519 aa9.86□□□□□ -0.83
USP48-208ENST00000479177 KDM5DQ9BY66 1539 aa9.86□□□□□ -0.83
USP48-208ENST00000479177 MAGI2Q86UL8 1455 aa9.85□□□□□ -0.83
USP48-208ENST00000479177 RAPGEF3O95398 923 aa9.85□□□□□ -0.83
USP48-208ENST00000479177 DEPDC5O75140 1603 aa9.85□□□□□ -0.83
USP48-208ENST00000479177 BCORL1Q5H9F3 1711 aa9.85□□□□□ -0.83
USP48-208ENST00000479177 TESPA1A2RU30 521 aaPredicted RBP9.84□□□□□ -0.83
USP48-208ENST00000479177 EN1Q05925 392 aaPredicted RBP9.84□□□□□ -0.83
USP48-208ENST00000479177 C6orf132Q5T0Z8 1188 aa9.84□□□□□ -0.83
USP48-208ENST00000479177 NYAP1Q6ZVC0 841 aa9.84□□□□□ -0.83
USP48-208ENST00000479177 FBXW7Q969H0 707 aa9.84□□□□□ -0.83
USP48-208ENST00000479177 A2MP01023 1474 aa9.84□□□□□ -0.83
USP48-208ENST00000479177 YEATS2Q9ULM3 1422 aa9.83□□□□□ -0.84
USP48-208ENST00000479177 RNF17Q9BXT8 1623 aaKnown RBP9.83□□□□□ -0.84
USP48-208ENST00000479177 MAP3K7O43318 606 aa9.83□□□□□ -0.84
USP48-208ENST00000479177 CDHR5Q9HBB8 845 aa9.83□□□□□ -0.84
USP48-208ENST00000479177 PZPP20742 1482 aa9.83□□□□□ -0.84
USP48-208ENST00000479177 REREQ9P2R6 1566 aa9.83□□□□□ -0.84
USP48-208ENST00000479177 ACIN1Q9UKV3 1341 aaKnown RBP9.82□□□□□ -0.84
USP48-208ENST00000479177 MROH1Q8NDA8 1641 aa9.82□□□□□ -0.84
USP48-208ENST00000479177 DHX29Q7Z478 1369 aaKnown RBP9.82□□□□□ -0.84
USP48-208ENST00000479177 IQGAP3Q86VI3 1631 aa9.82□□□□□ -0.84
USP48-208ENST00000479177 PRDM15P57071 1507 aaPredicted RBP9.82□□□□□ -0.84
USP48-208ENST00000479177 ONECUT3O60422 494 aaPredicted RBP9.81□□□□□ -0.84
USP48-208ENST00000479177 CCER1Q8TC90 406 aaPredicted RBP9.81□□□□□ -0.84
USP48-208ENST00000479177 HPS5Q9UPZ3 1129 aa9.81□□□□□ -0.84
USP48-208ENST00000479177 VWDEQ8N2E2 1590 aa9.8□□□□□ -0.84
USP48-208ENST00000479177 TRIM6-TRIM34B2RNG4 842 aa9.8□□□□□ -0.84
USP48-208ENST00000479177 GFRA3O60609 400 aa9.8□□□□□ -0.84
USP48-208ENST00000479177 FAM135AQ9P2D6 1515 aa9.8□□□□□ -0.84
USP48-208ENST00000479177 RBM26Q5T8P6 1007 aaKnown RBP9.79□□□□□ -0.84
USP48-208ENST00000479177 TRAF7Q6Q0C0 670 aa9.79□□□□□ -0.84
USP48-208ENST00000479177 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.79□□□□□ -0.84
USP48-208ENST00000479177 TSR3Q9UJK0 312 aaKnown RBP9.79□□□□□ -0.84
USP48-208ENST00000479177 CLSPNQ9HAW4 1339 aa9.79□□□□□ -0.84
USP48-208ENST00000479177 SIGLEC1Q9BZZ2 1709 aa9.79□□□□□ -0.84
USP48-208ENST00000479177 ATP10AO60312 1499 aa9.79□□□□□ -0.84
USP48-208ENST00000479177 AGLP35573 1532 aa9.78□□□□□ -0.84
USP48-208ENST00000479177 FAM98CQ17RN3 349 aaKnown RBP9.78□□□□□ -0.84
USP48-208ENST00000479177 NUP155O75694 1391 aa9.77□□□□□ -0.84
USP48-208ENST00000479177 TRIM52Q96A61 297 aa9.77□□□□□ -0.85
USP48-208ENST00000479177 LRCH3Q96II8 777 aa9.76□□□□□ -0.85
USP48-208ENST00000479177 TET3O43151 1660 aa9.76□□□□□ -0.85
USP48-208ENST00000479177 LMTK2Q8IWU2 1503 aa9.76□□□□□ -0.85
USP48-208ENST00000479177 LAPTM4AQ15012 233 aa9.75□□□□□ -0.85
USP48-208ENST00000479177 TSKSQ9UJT2 592 aa9.75□□□□□ -0.85
USP48-208ENST00000479177 CEP152O94986 1710 aa9.75□□□□□ -0.85
USP48-208ENST00000479177 ZC3H13Q5T200 1668 aaKnown RBP9.74□□□□□ -0.85
USP48-208ENST00000479177 ABCC3O15438 1527 aa9.74□□□□□ -0.85
USP48-208ENST00000479177 EFCAB6Q5THR3 1501 aa9.74□□□□□ -0.85
USP48-208ENST00000479177 KIF3BO15066 747 aa9.74□□□□□ -0.85
USP48-208ENST00000479177 TJAP1Q5JTD0 557 aa9.74□□□□□ -0.85
USP48-208ENST00000479177 MPHOSPH9Q99550 1183 aa9.74□□□□□ -0.85
USP48-208ENST00000479177 NPDC1Q9NQX5 325 aaPredicted RBP9.74□□□□□ -0.85
USP48-208ENST00000479177 PRKD2Q9BZL6 878 aa9.73□□□□□ -0.85
USP48-208ENST00000479177 E9PCH4 1651 aa9.73□□□□□ -0.85
USP48-208ENST00000479177 KANK1Q14678 1352 aa9.73□□□□□ -0.85
USP48-208ENST00000479177 NUTM2FA1L443 756 aa9.72□□□□□ -0.85
USP48-208ENST00000479177 ANKRD30BQ9BXX2 1392 aa9.72□□□□□ -0.85
USP48-208ENST00000479177 CAMSAP1Q5T5Y3 1602 aa9.71□□□□□ -0.85
USP48-208ENST00000479177 FAM198AQ9UFP1 575 aa9.71□□□□□ -0.86
USP48-208ENST00000479177 SMAPO00193 183 aa9.7□□□□□ -0.86
USP48-208ENST00000479177 ZEB1P37275 1124 aaPredicted RBP9.7□□□□□ -0.86
USP48-208ENST00000479177 SPHKAPQ2M3C7 1700 aa9.7□□□□□ -0.86
USP48-208ENST00000479177 C3orf80F5H4A9 247 aa9.69□□□□□ -0.86
USP48-208ENST00000479177 TRPM2O94759 1503 aa9.69□□□□□ -0.86
USP48-208ENST00000479177 PPP4CP60510 307 aa9.69□□□□□ -0.86
USP48-208ENST00000479177 PPP1R18Q6NYC8 613 aa9.69□□□□□ -0.86
USP48-208ENST00000479177 PLA2R1Q13018 1463 aa9.68□□□□□ -0.86
USP48-208ENST00000479177 RPRD2Q5VT52 1461 aaKnown RBP9.68□□□□□ -0.86
USP48-208ENST00000479177 PTGDRQ13258 359 aa9.68□□□□□ -0.86
USP48-208ENST00000479177 SMYD5Q6GMV2 418 aa9.68□□□□□ -0.86
USP48-208ENST00000479177 CDCA7LQ96GN5 454 aa9.68□□□□□ -0.86
USP48-208ENST00000479177 PTPRTO14522 1441 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 NRG2O14511 850 aaPredicted RBP9.67□□□□□ -0.86
USP48-208ENST00000479177 GPR37O15354 613 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 PRSS12P56730 875 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 GGT6Q6P531 493 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 SAMD7Q7Z3H4 446 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 ZNF516Q92618 1163 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 MTRQ99707 1265 aa9.67□□□□□ -0.86
USP48-208ENST00000479177 CLTCQ00610 1675 aaKnown RBP9.67□□□□□ -0.86
USP48-208ENST00000479177 NPATQ14207 1427 aa9.66□□□□□ -0.86
USP48-208ENST00000479177 ARHGAP31Q2M1Z3 1444 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms