RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 ABTB2Q8N961 1025 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 HMMRO75330 724 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 AMPHP49418 695 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 CCDC125Q86Z20 511 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 A2ML1A8K2U0 1454 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 NLRP2Q9NX02 1062 aa10.59□□□□□ -0.71
HLA-DPA1-247ENST00000479107 CCDC173Q0VFZ6 552 aa10.58□□□□□ -0.72
HLA-DPA1-247ENST00000479107 TPM4P67936 248 aa10.58□□□□□ -0.72
HLA-DPA1-247ENST00000479107 SYCP2Q9BX26 1530 aa10.58□□□□□ -0.72
HLA-DPA1-247ENST00000479107 RIMS2Q9UQ26 1411 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 CCDC39Q9UFE4 941 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 NAP1L2Q9ULW6 460 aaPredicted RBP10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ATP6V1DQ9Y5K8 247 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 GPR162Q16538 588 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 UGGT1Q9NYU2 1555 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 APAF1O14727 1248 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 PODXL2Q9NZ53 605 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 DDX19BQ9UMR2 479 aa10.57□□□□□ -0.72
HLA-DPA1-247ENST00000479107 RPRD2Q5VT52 1461 aaKnown RBP10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ESPNB1AK53 854 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ANKRD45Q5TZF3 282 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 FGD6Q6ZV73 1430 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 SHANK2Q9UPX8 1470 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ARHGEF40Q8TER5 1519 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 FOXD4L5Q5VV16 416 aaPredicted RBP10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 GOLGA6L1Q8N7Z2 621 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 FOXD4L4Q8WXT5 416 aaPredicted RBP10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 LTV1Q96GA3 475 aaPredicted RBP10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 TERF2IPQ9NYB0 399 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 TMEM2Q9UHN6 1383 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 SCAF11Q99590 1463 aaKnown RBP10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 NLRP6P59044 892 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 NUTM2GQ5VZR2 741 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 BCL2L13Q9BXK5 485 aa10.56□□□□□ -0.72
HLA-DPA1-247ENST00000479107 GPATCH8Q9UKJ3 1502 aaKnown RBP10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 APBA3O96018 575 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ATP7AQ04656 1500 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 MADDQ8WXG6 1647 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 DIAPH3Q9NSV4 1193 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 A0A0U1RQG5 324 aaPredicted RBP10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 LRRC9Q6ZRR7 1453 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 GRPEL1Q9HAV7 217 aa10.55□□□□□ -0.72
HLA-DPA1-247ENST00000479107 HMGN5P82970 282 aaKnown RBP10.54□□□□□ -0.72
HLA-DPA1-247ENST00000479107 NOL8Q76FK4 1167 aaKnown RBP10.54□□□□□ -0.72
HLA-DPA1-247ENST00000479107 TRIM6-TRIM34B2RNG4 842 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 ZC3H6P61129 1189 aaKnown RBP10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 KRT27Q7Z3Y8 459 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 DZIP1LQ8IYY4 767 aaKnown RBP10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 PNISRQ8TF01 805 aaKnown RBP10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 REC8O95072 547 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 RRP7AQ9Y3A4 280 aaKnown RBP10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 CAMSAP2Q08AD1 1489 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 CDCA7LQ96GN5 454 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 CAMSAP1Q5T5Y3 1602 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 MCTP1Q6DN14 999 aa10.53□□□□□ -0.72
HLA-DPA1-247ENST00000479107 STAC3Q96MF2 364 aa10.52□□□□□ -0.72
HLA-DPA1-247ENST00000479107 NCOA1Q15788 1441 aa10.52□□□□□ -0.72
HLA-DPA1-247ENST00000479107 LTKP29376 864 aa10.52□□□□□ -0.73
HLA-DPA1-247ENST00000479107 RAPGEF4Q8WZA2 1011 aa10.52□□□□□ -0.73
HLA-DPA1-247ENST00000479107 MCM4P33991 863 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 RBM10P98175 930 aaKnown RBP10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 CCDC184Q52MB2 194 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 TEX35Q5T0J7 233 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 CPS1P31327 1500 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 GOLGA6L19H0YKK7 550 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 EXOC5O00471 708 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 TMEM132EQ6IEE7 984 aa10.51□□□□□ -0.73
HLA-DPA1-247ENST00000479107 RTF1Q92541 710 aaKnown RBP10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 PDE3AQ14432 1141 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ILDR2Q71H61 639 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 CCDC66A2RUB6 948 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 LMOD3Q0VAK6 560 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 PRAM1Q96QH2 718 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ABCA9Q8IUA7 1624 aa10.5□□□□□ -0.73
HLA-DPA1-247ENST00000479107 TPM3P06753 285 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 GPS2Q13227 327 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 MBD3O95983 291 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 FAM98CQ17RN3 349 aaKnown RBP10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 PANK1Q8TE04 598 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 TAOK2Q9UL54 1235 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 EVC2Q86UK5 1308 aa10.49□□□□□ -0.73
HLA-DPA1-247ENST00000479107 SETD1BQ9UPS6 1966 aaKnown RBP10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ZNF592Q92610 1267 aa10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 FAM196AQ6ZSG2 479 aa10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 BECN2A8MW95 431 aa10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 GNL2Q13823 731 aaKnown RBP10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 CAVIN1Q6NZI2 390 aaKnown RBP10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 GTF2E1P29083 439 aaPredicted RBP10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 STK31Q9BXU1 1019 aa10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ADAMTS8Q9UP79 889 aa10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ZNF330Q9Y3S2 320 aaPredicted RBP10.48□□□□□ -0.73
HLA-DPA1-247ENST00000479107 FOXD4L6Q3SYB3 417 aaPredicted RBP10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 FOXD4L3Q6VB84 417 aaPredicted RBP10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 PDCL3Q9H2J4 239 aa10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 CIZ1Q9ULV3 898 aaPredicted RBP10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ERBINQ96RT1 1412 aa10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 ZSCAN30Q86W11 494 aa10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.47□□□□□ -0.73
HLA-DPA1-247ENST00000479107 GPATCH3Q96I76 525 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 186.5 ms