RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SRPK2P78362 688 aaKnown RBP15.96■□□□□ 0.14
PTPRF-212ENST00000477970 PNPLA6Q8IY17 1366 aa15.95■□□□□ 0.14
PTPRF-212ENST00000477970 MON2Q7Z3U7 1717 aa15.95■□□□□ 0.14
PTPRF-212ENST00000477970 PLIN1O60240 522 aa15.95■□□□□ 0.14
PTPRF-212ENST00000477970 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-212ENST00000477970 STK26Q9P289 416 aa15.95■□□□□ 0.14
PTPRF-212ENST00000477970 KDM2BQ8NHM5 1336 aa15.95■□□□□ 0.14
PTPRF-212ENST00000477970 CERKQ8TCT0 537 aa15.94■□□□□ 0.14
PTPRF-212ENST00000477970 AKAP12Q02952 1782 aa15.94■□□□□ 0.14
PTPRF-212ENST00000477970 MSH5O43196 834 aa15.94■□□□□ 0.14
PTPRF-212ENST00000477970 HDGFL2Q7Z4V5 671 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-212ENST00000477970 XRN1Q8IZH2 1706 aaKnown RBP15.93■□□□□ 0.14
PTPRF-212ENST00000477970 PIK3R4Q99570 1358 aa15.93■□□□□ 0.14
PTPRF-212ENST00000477970 CDK19Q9BWU1 502 aa15.93■□□□□ 0.14
PTPRF-212ENST00000477970 CPSF1Q10570 1443 aaKnown RBP15.93■□□□□ 0.14
PTPRF-212ENST00000477970 MINK1Q8N4C8 1332 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-212ENST00000477970 ADAMTS13Q76LX8 1427 aa15.92■□□□□ 0.14
PTPRF-212ENST00000477970 FYB1O15117 783 aa15.92■□□□□ 0.14
PTPRF-212ENST00000477970 TCP11L2Q8N4U5 519 aa15.91■□□□□ 0.14
PTPRF-212ENST00000477970 PDE3AQ14432 1141 aa15.91■□□□□ 0.14
PTPRF-212ENST00000477970 C20orf194Q5TEA3 1177 aa15.91■□□□□ 0.14
PTPRF-212ENST00000477970 CENPQQ7L2Z9 268 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-212ENST00000477970 ZNF335Q9H4Z2 1342 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-212ENST00000477970 LRRC7Q96NW7 1537 aa15.9■□□□□ 0.14
PTPRF-212ENST00000477970 ITSN1Q15811 1721 aa15.9■□□□□ 0.14
PTPRF-212ENST00000477970 EDC4Q6P2E9 1401 aaKnown RBP15.9■□□□□ 0.14
PTPRF-212ENST00000477970 AAMPQ13685 434 aa15.89■□□□□ 0.13
PTPRF-212ENST00000477970 SAFB2Q14151 953 aaKnown RBP eCLIP15.89■□□□□ 0.13
PTPRF-212ENST00000477970 TOPAZ1Q8N9V7 1692 aa15.89■□□□□ 0.13
PTPRF-212ENST00000477970 FBXO41Q8TF61 875 aa15.89■□□□□ 0.13
PTPRF-212ENST00000477970 CT47B1P0C2W7 299 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-212ENST00000477970 PLEKHF1Q96S99 279 aa15.88■□□□□ 0.13
PTPRF-212ENST00000477970 TNNT2P45379 298 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-212ENST00000477970 METP08581 1390 aa15.88■□□□□ 0.13
PTPRF-212ENST00000477970 TBX22Q9Y458 520 aa15.88■□□□□ 0.13
PTPRF-212ENST00000477970 NCOA3Q9Y6Q9 1424 aa15.86■□□□□ 0.13
PTPRF-212ENST00000477970 PNNQ9H307 717 aaKnown RBP15.86■□□□□ 0.13
PTPRF-212ENST00000477970 IL16Q14005 1332 aa15.86■□□□□ 0.13
PTPRF-212ENST00000477970 NRKQ7Z2Y5 1582 aa15.86■□□□□ 0.13
PTPRF-212ENST00000477970 AATKQ6ZMQ8 1374 aa15.85■□□□□ 0.13
PTPRF-212ENST00000477970 WASLO00401 505 aaPredicted RBP15.85■□□□□ 0.13
PTPRF-212ENST00000477970 MYH16Q9H6N6 1097 aa15.85■□□□□ 0.13
PTPRF-212ENST00000477970 CABP1Q9NZU7 370 aa15.85■□□□□ 0.13
PTPRF-212ENST00000477970 GGNBP2Q9H3C7 697 aa15.85■□□□□ 0.13
PTPRF-212ENST00000477970 CDK12Q9NYV4 1490 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-212ENST00000477970 KCNA6P17658 529 aa15.84■□□□□ 0.13
PTPRF-212ENST00000477970 PPIP5K1Q6PFW1 1433 aa15.84■□□□□ 0.13
PTPRF-212ENST00000477970 U2AF1L5P0DN76 240 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-212ENST00000477970 U2AF1Q01081 240 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTPRF-212ENST00000477970 BACH2Q9BYV9 841 aa15.84■□□□□ 0.13
PTPRF-212ENST00000477970 MAP2P11137 1827 aaKnown RBP15.84■□□□□ 0.13
PTPRF-212ENST00000477970 BCAR3O75815 825 aa15.83■□□□□ 0.12
PTPRF-212ENST00000477970 RARSP54136 660 aaKnown RBP15.83■□□□□ 0.12
PTPRF-212ENST00000477970 WAPLQ7Z5K2 1190 aa15.82■□□□□ 0.12
PTPRF-212ENST00000477970 PDE4AP27815 886 aa15.81■□□□□ 0.12
PTPRF-212ENST00000477970 ANP32AP39687 249 aaKnown RBP15.81■□□□□ 0.12
PTPRF-212ENST00000477970 VIRMAQ69YN4 1812 aaKnown RBP15.81■□□□□ 0.12
PTPRF-212ENST00000477970 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-212ENST00000477970 DIAPH1O60610 1272 aaKnown RBP15.81■□□□□ 0.12
PTPRF-212ENST00000477970 NALCNQ8IZF0 1738 aa15.8■□□□□ 0.12
PTPRF-212ENST00000477970 TMPOP42166 694 aaKnown RBP15.79■□□□□ 0.12
PTPRF-212ENST00000477970 IPO9Q96P70 1041 aaKnown RBP15.79■□□□□ 0.12
PTPRF-212ENST00000477970 FCHSD2O94868 740 aa15.79■□□□□ 0.12
PTPRF-212ENST00000477970 PTPRUQ92729 1446 aa15.79■□□□□ 0.12
PTPRF-212ENST00000477970 RRP7AQ9Y3A4 280 aaKnown RBP15.79■□□□□ 0.12
PTPRF-212ENST00000477970 TRIM35Q9UPQ4 493 aa15.78■□□□□ 0.12
PTPRF-212ENST00000477970 PTCH1Q13635 1447 aa15.78■□□□□ 0.12
PTPRF-212ENST00000477970 MAPK8IP3Q9UPT6 1336 aa15.77■□□□□ 0.12
PTPRF-212ENST00000477970 ZNF692Q9BU19 519 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-212ENST00000477970 POLKQ9UBT6 870 aa15.77■□□□□ 0.11
PTPRF-212ENST00000477970 CCDC61Q9Y6R9 512 aa15.77■□□□□ 0.11
PTPRF-212ENST00000477970 NOP58Q9Y2X3 529 aaKnown RBP15.76■□□□□ 0.11
PTPRF-212ENST00000477970 NUDT16Q96DE0 195 aaKnown RBP15.76■□□□□ 0.11
PTPRF-212ENST00000477970 SLC26A8Q96RN1 970 aa15.76■□□□□ 0.11
PTPRF-212ENST00000477970 ROBO2Q9HCK4 1378 aa15.76■□□□□ 0.11
PTPRF-212ENST00000477970 CLUAP1Q96AJ1 413 aa15.76■□□□□ 0.11
PTPRF-212ENST00000477970 ERICH6Q7L0X2 663 aa15.75■□□□□ 0.11
PTPRF-212ENST00000477970 ILDR1Q86SU0 546 aaPredicted RBP15.75■□□□□ 0.11
PTPRF-212ENST00000477970 NEUROD2Q15784 382 aa15.75■□□□□ 0.11
PTPRF-212ENST00000477970 DCCP43146 1447 aa15.74■□□□□ 0.11
PTPRF-212ENST00000477970 U2SURPO15042 1029 aaKnown RBP15.74■□□□□ 0.11
PTPRF-212ENST00000477970 RSPH6AQ9H0K4 717 aa15.74■□□□□ 0.11
PTPRF-212ENST00000477970 USP54Q70EL1 1684 aa15.72■□□□□ 0.11
PTPRF-212ENST00000477970 TMEM94Q12767 1356 aa15.72■□□□□ 0.11
PTPRF-212ENST00000477970 PLEKHG3A1L390 1219 aa15.72■□□□□ 0.11
PTPRF-212ENST00000477970 CANXP27824 592 aaKnown RBP15.72■□□□□ 0.11
PTPRF-212ENST00000477970 ZNF428Q96B54 188 aa15.72■□□□□ 0.11
PTPRF-212ENST00000477970 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-212ENST00000477970 OVOS2A0A0J9YW53 1432 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 OVOS2Q6IE36 1432 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 RGPD1P0DJD0 1748 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 PRR36Q9H6K5 1346 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 IL13P35225 146 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 PMFBP1Q8TBY8 1022 aa15.71■□□□□ 0.11
PTPRF-212ENST00000477970 SSH2Q76I76 1423 aa15.7■□□□□ 0.1
PTPRF-212ENST00000477970 BRPF1P55201 1214 aaPredicted RBP15.7■□□□□ 0.1
PTPRF-212ENST00000477970 FAM161AQ3B820 660 aa15.7■□□□□ 0.1
PTPRF-212ENST00000477970 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.7■□□□□ 0.1
PTPRF-212ENST00000477970 RIPK4P57078 832 aa15.7■□□□□ 0.1
PTPRF-212ENST00000477970 DLG5Q8TDM6 1919 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms