RNA–Protein interactions for RNA: ENST00000477693.1

NIFK-205, Transcript of nucleolar protein interacting with the FHA domain of MKI67, human

TSL 1 (best)

Gene NIFK, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIFK-205	ENST00000477693	SRPK2	P78362	688 aa	Known RBP	13.83	□□□□□ -0.2
NIFK-205	ENST00000477693	PSME1	Q06323	249 aa		13.83	□□□□□ -0.2
NIFK-205	ENST00000477693	POLR3A	O14802	1390 aa	Predicted RBP	13.83	□□□□□ -0.2
NIFK-205	ENST00000477693	PLEKHG3	A1L390	1219 aa		13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	ABCB7	O75027	752 aa		13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	ATXN8OS	P0DMR3	200 aa		13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	CABP2	Q9NPB3	220 aa		13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	PPIP5K1	Q6PFW1	1433 aa		13.81	□□□□□ -0.2
NIFK-205	ENST00000477693	NGDN	Q8NEJ9	315 aa	Known RBP	13.8	□□□□□ -0.2
NIFK-205	ENST00000477693	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.79	□□□□□ -0.2
NIFK-205	ENST00000477693	NUTM2E	B1AL46	878 aa	Predicted RBP	13.79	□□□□□ -0.2
NIFK-205	ENST00000477693	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.79	□□□□□ -0.2
NIFK-205	ENST00000477693	ARHGEF10	O15013	1369 aa		13.79	□□□□□ -0.2
NIFK-205	ENST00000477693	USP47	Q96K76	1375 aa		13.79	□□□□□ -0.2
NIFK-205	ENST00000477693	ST20-MTHFS	A0A0A6YYL1	179 aa		13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	MEX3C	Q5U5Q3	659 aa	Known RBP	13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	TESK2	Q96S53	571 aa		13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	ACE	P12821	1306 aa		13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	ATAD2	Q6PL18	1390 aa		13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	ALS2	Q96Q42	1657 aa		13.78	□□□□□ -0.2
NIFK-205	ENST00000477693	SLC24A1	O60721	1099 aa		13.77	□□□□□ -0.21
NIFK-205	ENST00000477693	PUS7	Q96PZ0	661 aa	Known RBP	13.76	□□□□□ -0.21
NIFK-205	ENST00000477693	CABP1	Q9NZU7	370 aa		13.76	□□□□□ -0.21
NIFK-205	ENST00000477693	BRD4	O60885	1362 aa	Predicted RBP	13.75	□□□□□ -0.21
NIFK-205	ENST00000477693	USP6	P35125	1406 aa		13.73	□□□□□ -0.21
NIFK-205	ENST00000477693	ADAMTS2	O95450	1211 aa		13.73	□□□□□ -0.21
NIFK-205	ENST00000477693	ZNF772	Q68DY9	489 aa	Predicted RBP	13.73	□□□□□ -0.21
NIFK-205	ENST00000477693	C8orf37	Q96NL8	207 aa		13.73	□□□□□ -0.21
NIFK-205	ENST00000477693	ABCA3	Q99758	1704 aa		13.73	□□□□□ -0.21
NIFK-205	ENST00000477693	AFF2	P51816	1311 aa		13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	PAK3	O75914	559 aa	Predicted RBP	13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	POLA2	Q14181	598 aa		13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	LMOD2	Q6P5Q4	547 aa		13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	MARF1	Q9Y4F3	1742 aa	Known RBP	13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	CPSF1	Q10570	1443 aa	Known RBP	13.72	□□□□□ -0.21
NIFK-205	ENST00000477693	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.71	□□□□□ -0.21
NIFK-205	ENST00000477693	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
NIFK-205	ENST00000477693	ZNF692	Q9BU19	519 aa	Predicted RBP	13.71	□□□□□ -0.21
NIFK-205	ENST00000477693	SSH2	Q76I76	1423 aa		13.71	□□□□□ -0.22
NIFK-205	ENST00000477693	NINL	Q9Y2I6	1382 aa		13.71	□□□□□ -0.22
NIFK-205	ENST00000477693	CRYBG1	Q9Y4K1	1723 aa		13.7	□□□□□ -0.22
NIFK-205	ENST00000477693	TMF1	P82094	1093 aa		13.7	□□□□□ -0.22
NIFK-205	ENST00000477693	CABLES1	Q8TDN4	633 aa		13.7	□□□□□ -0.22
NIFK-205	ENST00000477693	NGLY1	Q96IV0	654 aa		13.7	□□□□□ -0.22
NIFK-205	ENST00000477693	AKAP12	Q02952	1782 aa		13.7	□□□□□ -0.22
NIFK-205	ENST00000477693	CD163L1	Q9NR16	1453 aa		13.69	□□□□□ -0.22
NIFK-205	ENST00000477693	NRK	Q7Z2Y5	1582 aa		13.69	□□□□□ -0.22
NIFK-205	ENST00000477693	HAP1	P54257	671 aa	Predicted RBP	13.68	□□□□□ -0.22
NIFK-205	ENST00000477693	ABTB2	Q8N961	1025 aa		13.68	□□□□□ -0.22
NIFK-205	ENST00000477693	SLIT2	O94813	1529 aa		13.68	□□□□□ -0.22
NIFK-205	ENST00000477693	USP19	O94966	1318 aa		13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	CDCA8	Q53HL2	280 aa		13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	SLC12A5	Q9H2X9	1139 aa		13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	KTN1	Q86UP2	1357 aa	Known RBP	13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	MON2	Q7Z3U7	1717 aa		13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	BCL9L	Q86UU0	1499 aa		13.67	□□□□□ -0.22
NIFK-205	ENST00000477693	TMC1	Q8TDI8	760 aa		13.66	□□□□□ -0.22
NIFK-205	ENST00000477693	USP21	Q9UK80	565 aa		13.66	□□□□□ -0.22
NIFK-205	ENST00000477693	TTC21B	Q7Z4L5	1316 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	TTC21A	Q8NDW8	1320 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	PLEKHG5	O94827	1062 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	NLRP13	Q86W25	1043 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	TERF2IP	Q9NYB0	399 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693		A0A1W2PP64	1363 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	PIK3C2A	O00443	1686 aa		13.65	□□□□□ -0.22
NIFK-205	ENST00000477693	ATRN	O75882	1429 aa		13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	NUTM2G	Q5VZR2	741 aa		13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	QTRT2	Q9H974	415 aa	Known RBP	13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	NWD2	Q9ULI1	1742 aa		13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	EDC4	Q6P2E9	1401 aa	Known RBP	13.64	□□□□□ -0.23
NIFK-205	ENST00000477693	PLCH1	Q4KWH8	1693 aa		13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	FAM83G	A6ND36	823 aa		13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	HSPA5	P11021	654 aa	Known RBP	13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	RXRB	P28702	533 aa		13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	UNC5CL	Q8IV45	518 aa		13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	TRPC5	Q9UL62	973 aa	Predicted RBP	13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	SLIT3	O75094	1523 aa		13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	COL14A1	Q05707	1796 aa	Known RBP	13.63	□□□□□ -0.23
NIFK-205	ENST00000477693	CPD	O75976	1380 aa		13.62	□□□□□ -0.23
NIFK-205	ENST00000477693	ANKRD36B	Q8N2N9	1353 aa		13.62	□□□□□ -0.23
NIFK-205	ENST00000477693	NLRP6	P59044	892 aa		13.62	□□□□□ -0.23
NIFK-205	ENST00000477693	KIAA0232	Q92628	1395 aa		13.61	□□□□□ -0.23
NIFK-205	ENST00000477693	USP54	Q70EL1	1684 aa		13.61	□□□□□ -0.23
NIFK-205	ENST00000477693	GC	P02774	474 aa		13.61	□□□□□ -0.23
NIFK-205	ENST00000477693	RBM6	P78332	1123 aa	Known RBP	13.61	□□□□□ -0.23
NIFK-205	ENST00000477693	PRDM11	Q9NQV5	511 aa		13.61	□□□□□ -0.23
NIFK-205	ENST00000477693	USP31	Q70CQ4	1352 aa		13.6	□□□□□ -0.23
NIFK-205	ENST00000477693	MYOM1	P52179	1685 aa		13.59	□□□□□ -0.23
NIFK-205	ENST00000477693	NRAP	Q86VF7	1730 aa		13.59	□□□□□ -0.23
NIFK-205	ENST00000477693	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.59	□□□□□ -0.23
NIFK-205	ENST00000477693	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
NIFK-205	ENST00000477693	ZC3H6	P61129	1189 aa	Known RBP	13.58	□□□□□ -0.24
NIFK-205	ENST00000477693	VPS72	Q15906	364 aa		13.58	□□□□□ -0.24
NIFK-205	ENST00000477693	KCNH5	Q8NCM2	988 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms