RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 RLBP1P12271 317 aa23.11■■□□□ 1.29
CCM2-209ENST00000477605 PCDHB15Q9Y5E8 787 aa23.11■■□□□ 1.29
CCM2-209ENST00000477605 BECN1Q14457 450 aa23.1■■□□□ 1.29
CCM2-209ENST00000477605 MVPQ14764 893 aaKnown RBP23.1■■□□□ 1.29
CCM2-209ENST00000477605 CFAP65Q6ZU64 1925 aaKnown RBP23.1■■□□□ 1.29
CCM2-209ENST00000477605 PLEKHF1Q96S99 279 aa23.1■■□□□ 1.29
CCM2-209ENST00000477605 PNNQ9H307 717 aaKnown RBP23.1■■□□□ 1.29
CCM2-209ENST00000477605 HSPA2P54652 639 aa23.08■■□□□ 1.29
CCM2-209ENST00000477605 COL3A1P02461 1466 aaPredicted RBP23.08■■□□□ 1.28
CCM2-209ENST00000477605 SETD1BQ9UPS6 1966 aaKnown RBP23.07■■□□□ 1.28
CCM2-209ENST00000477605 CLTCQ00610 1675 aaKnown RBP23.07■■□□□ 1.28
CCM2-209ENST00000477605 PREX1Q8TCU6 1659 aa23.07■■□□□ 1.28
CCM2-209ENST00000477605 SRPK2P78362 688 aaKnown RBP23.07■■□□□ 1.28
CCM2-209ENST00000477605 DZIP1LQ8IYY4 767 aaKnown RBP23.07■■□□□ 1.28
CCM2-209ENST00000477605 UPF2Q9HAU5 1272 aaKnown RBP23.07■■□□□ 1.28
CCM2-209ENST00000477605 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
CCM2-209ENST00000477605 TMPOP42166 694 aaKnown RBP23.06■■□□□ 1.28
CCM2-209ENST00000477605 NUTM2DQ5VT03 806 aaPredicted RBP23.06■■□□□ 1.28
CCM2-209ENST00000477605 PDZRN3Q9UPQ7 1066 aa23.06■■□□□ 1.28
CCM2-209ENST00000477605 FTSJ3Q8IY81 847 aaKnown RBP23.04■■□□□ 1.28
CCM2-209ENST00000477605 TMEM131LA2VDJ0 1609 aa23.04■■□□□ 1.28
CCM2-209ENST00000477605 NLRP1Q9C000 1473 aa23.03■■□□□ 1.28
CCM2-209ENST00000477605 YTHDC2Q9H6S0 1430 aaKnown RBP23.03■■□□□ 1.28
CCM2-209ENST00000477605 PNPLA6Q8IY17 1366 aa23.03■■□□□ 1.28
CCM2-209ENST00000477605 FYB1O15117 783 aa23.03■■□□□ 1.28
CCM2-209ENST00000477605 BCL2L13Q9BXK5 485 aa23.03■■□□□ 1.28
CCM2-209ENST00000477605 TNNQ9UQP3 1299 aa23.02■■□□□ 1.28
CCM2-209ENST00000477605 SEC24BO95487 1268 aa23.02■■□□□ 1.28
CCM2-209ENST00000477605 HDGFL2Q7Z4V5 671 aaPredicted RBP23.02■■□□□ 1.28
CCM2-209ENST00000477605 TRIM35Q9UPQ4 493 aa23.02■■□□□ 1.28
CCM2-209ENST00000477605 ANKRD26Q9UPS8 1709 aa23.02■■□□□ 1.28
CCM2-209ENST00000477605 HDAC1Q13547 482 aaPredicted RBP23.01■■□□□ 1.27
CCM2-209ENST00000477605 DDX19BQ9UMR2 479 aa23.01■■□□□ 1.27
CCM2-209ENST00000477605 CD163L1Q9NR16 1453 aa23.01■■□□□ 1.27
CCM2-209ENST00000477605 U2SURPO15042 1029 aaKnown RBP23.01■■□□□ 1.27
CCM2-209ENST00000477605 GGNBP2Q9H3C7 697 aa23.01■■□□□ 1.27
CCM2-209ENST00000477605 STK26Q9P289 416 aa23.01■■□□□ 1.27
CCM2-209ENST00000477605 TBC1D32Q96NH3 1257 aa23■■□□□ 1.27
CCM2-209ENST00000477605 POGKQ9P215 609 aa23■■□□□ 1.27
CCM2-209ENST00000477605 EXOSC9Q06265 439 aaKnown RBP22.99■■□□□ 1.27
CCM2-209ENST00000477605 SMC4Q9NTJ3 1288 aa22.99■■□□□ 1.27
CCM2-209ENST00000477605 DIAPH1O60610 1272 aaKnown RBP22.99■■□□□ 1.27
CCM2-209ENST00000477605 SAFB2Q14151 953 aaKnown RBP eCLIP22.99■■□□□ 1.27
CCM2-209ENST00000477605 PRAM1Q96QH2 718 aa22.99■■□□□ 1.27
CCM2-209ENST00000477605 ATF7IPQ6VMQ6 1270 aa22.97■■□□□ 1.27
CCM2-209ENST00000477605 IPO8O15397 1037 aaKnown RBP22.97■■□□□ 1.27
CCM2-209ENST00000477605 FCHSD2O94868 740 aa22.96■■□□□ 1.27
CCM2-209ENST00000477605 TSR2Q969E8 191 aaKnown RBP22.96■■□□□ 1.27
CCM2-209ENST00000477605 ZNF428Q96B54 188 aa22.96■■□□□ 1.27
CCM2-209ENST00000477605 FRAT2O75474 233 aaPredicted RBP22.96■■□□□ 1.27
CCM2-209ENST00000477605 TRIM27P14373 513 aa22.96■■□□□ 1.27
CCM2-209ENST00000477605 SSH1Q8WYL5 1049 aa22.96■■□□□ 1.27
CCM2-209ENST00000477605 MINK1Q8N4C8 1332 aaPredicted RBP22.95■■□□□ 1.26
CCM2-209ENST00000477605 KIF16BQ96L93 1317 aa22.95■■□□□ 1.26
CCM2-209ENST00000477605 CDC42BPGQ6DT37 1551 aa22.95■■□□□ 1.26
CCM2-209ENST00000477605 ALDH1L2Q3SY69 923 aa22.95■■□□□ 1.26
CCM2-209ENST00000477605 RIPK4P57078 832 aa22.94■■□□□ 1.26
CCM2-209ENST00000477605 ALKQ9UM73 1620 aa22.94■■□□□ 1.26
CCM2-209ENST00000477605 DLC1Q96QB1 1528 aa22.93■■□□□ 1.26
CCM2-209ENST00000477605 CDK19Q9BWU1 502 aa22.93■■□□□ 1.26
CCM2-209ENST00000477605 BRPF1P55201 1214 aaPredicted RBP22.93■■□□□ 1.26
CCM2-209ENST00000477605 SMC5Q8IY18 1101 aa22.91■■□□□ 1.26
CCM2-209ENST00000477605 NOB1Q9ULX3 412 aaKnown RBP22.9■■□□□ 1.26
CCM2-209ENST00000477605 ATP7BP35670 1465 aa22.9■■□□□ 1.26
CCM2-209ENST00000477605 PPIP5K1Q6PFW1 1433 aa22.89■■□□□ 1.26
CCM2-209ENST00000477605 ITPRIPQ8IWB1 547 aa22.89■■□□□ 1.25
CCM2-209ENST00000477605 CALD1Q05682 793 aaKnown RBP22.88■■□□□ 1.25
CCM2-209ENST00000477605 CHMP4BQ9H444 224 aaKnown RBP22.88■■□□□ 1.25
CCM2-209ENST00000477605 ANTXR1Q9H6X2 564 aa22.88■■□□□ 1.25
CCM2-209ENST00000477605 ZBTB40Q9NUA8 1239 aa22.88■■□□□ 1.25
CCM2-209ENST00000477605 CABP1Q9NZU7 370 aa22.88■■□□□ 1.25
CCM2-209ENST00000477605 FBXO31Q5XUX0 539 aaPredicted RBP22.88■■□□□ 1.25
CCM2-209ENST00000477605 MYO5BQ9ULV0 1848 aa22.88■■□□□ 1.25
CCM2-209ENST00000477605 STRCQ7RTU9 1775 aa22.86■■□□□ 1.25
CCM2-209ENST00000477605 FAM135BQ49AJ0 1406 aa22.86■■□□□ 1.25
CCM2-209ENST00000477605 IL27Q8NEV9 243 aa22.86■■□□□ 1.25
CCM2-209ENST00000477605 TBC1D2Q9BYX2 928 aa22.85■■□□□ 1.25
CCM2-209ENST00000477605 KIF20BQ96Q89 1820 aa22.85■■□□□ 1.25
CCM2-209ENST00000477605 TMEM57Q8N5G2 664 aa22.85■■□□□ 1.25
CCM2-209ENST00000477605 RSPH6AQ9H0K4 717 aa22.85■■□□□ 1.25
CCM2-209ENST00000477605 STAG3Q9UJ98 1225 aa22.84■■□□□ 1.25
CCM2-209ENST00000477605 ARHGAP45Q92619 1136 aa22.83■■□□□ 1.25
CCM2-209ENST00000477605 ZNF142P52746 1687 aaPredicted RBP22.83■■□□□ 1.25
CCM2-209ENST00000477605 POLKQ9UBT6 870 aa22.83■■□□□ 1.24
CCM2-209ENST00000477605 CEP170BQ9Y4F5 1589 aaPredicted RBP22.82■■□□□ 1.24
CCM2-209ENST00000477605 C22orf23Q9BZE7 217 aa22.81■■□□□ 1.24
CCM2-209ENST00000477605 TNRQ92752 1358 aa22.81■■□□□ 1.24
CCM2-209ENST00000477605 LRRC7Q96NW7 1537 aa22.81■■□□□ 1.24
CCM2-209ENST00000477605 NFE2L2Q16236 605 aa22.81■■□□□ 1.24
CCM2-209ENST00000477605 NUCB1Q02818 461 aa22.8■■□□□ 1.24
CCM2-209ENST00000477605 PRKAR2BP31323 418 aa22.8■■□□□ 1.24
CCM2-209ENST00000477605 A2ML1A8K2U0 1454 aa22.79■■□□□ 1.24
CCM2-209ENST00000477605 AATKQ6ZMQ8 1374 aa22.79■■□□□ 1.24
CCM2-209ENST00000477605 PIK3R4Q99570 1358 aa22.79■■□□□ 1.24
CCM2-209ENST00000477605 SLKQ9H2G2 1235 aaPredicted RBP22.78■■□□□ 1.24
CCM2-209ENST00000477605 EDC4Q6P2E9 1401 aaKnown RBP22.78■■□□□ 1.24
CCM2-209ENST00000477605 CPSF1Q10570 1443 aaKnown RBP22.78■■□□□ 1.24
CCM2-209ENST00000477605 GNAI1P63096 354 aa22.77■■□□□ 1.24
CCM2-209ENST00000477605 IFT57Q9NWB7 429 aa22.77■■□□□ 1.24
CCM2-209ENST00000477605 RIMS2Q9UQ26 1411 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms