RNA–Protein interactions for RNA: ENST00000476664.1

LRCH3-215, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 227 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-215ENST00000476664 SPATA32Q96LK8 384 aa10.07□□□□□ -0.8
LRCH3-215ENST00000476664 HMX1Q9NP08 348 aaPredicted RBP10.07□□□□□ -0.8
LRCH3-215ENST00000476664 SOWAHDA6NJG2 315 aa10.06□□□□□ -0.8
LRCH3-215ENST00000476664 NCLP19338 710 aaKnown RBP10.06□□□□□ -0.8
LRCH3-215ENST00000476664 MARSP56192 900 aaKnown RBP10.06□□□□□ -0.8
LRCH3-215ENST00000476664 BCL11AQ9H165 835 aa10.06□□□□□ -0.8
LRCH3-215ENST00000476664 SLC34A2O95436 690 aa10.05□□□□□ -0.8
LRCH3-215ENST00000476664 SF3A1Q15459 793 aaKnown RBP10.05□□□□□ -0.8
LRCH3-215ENST00000476664 TMEM92Q6UXU6 159 aa10.05□□□□□ -0.8
LRCH3-215ENST00000476664 UBXN4Q92575 508 aa10.05□□□□□ -0.8
LRCH3-215ENST00000476664 CUX1P39880 1505 aa10.05□□□□□ -0.8
LRCH3-215ENST00000476664 RCCD1A6NED2 376 aa10.04□□□□□ -0.8
LRCH3-215ENST00000476664 DDX11L8A8MPP1 907 aa10.04□□□□□ -0.8
LRCH3-215ENST00000476664 EIF4G2P78344 907 aaKnown RBP eCLIP10.04□□□□□ -0.8
LRCH3-215ENST00000476664 IRX5P78411 483 aaPredicted RBP10.04□□□□□ -0.8
LRCH3-215ENST00000476664 CTDSPL2Q05D32 466 aa10.04□□□□□ -0.8
LRCH3-215ENST00000476664 ZMIZ1Q9ULJ6 1067 aa10.04□□□□□ -0.8
LRCH3-215ENST00000476664 NOVA2Q9UNW9 492 aaKnown RBP10.04□□□□□ -0.8
LRCH3-215ENST00000476664 EPRSP07814 1512 aaKnown RBP10.03□□□□□ -0.8
LRCH3-215ENST00000476664 SMARCA5O60264 1052 aaPredicted RBP10.03□□□□□ -0.8
LRCH3-215ENST00000476664 SSFA2P28290 1259 aa10.03□□□□□ -0.8
LRCH3-215ENST00000476664 BCORL1Q5H9F3 1711 aa10.03□□□□□ -0.8
LRCH3-215ENST00000476664 C6orf132Q5T0Z8 1188 aa10.03□□□□□ -0.8
LRCH3-215ENST00000476664 KANK4Q5T7N3 995 aaPredicted RBP10.03□□□□□ -0.8
LRCH3-215ENST00000476664 PHLDB3Q6NSJ2 640 aa10.03□□□□□ -0.8
LRCH3-215ENST00000476664 CUL7Q14999 1698 aa10.02□□□□□ -0.8
LRCH3-215ENST00000476664 KIAA0586Q9BVV6 1533 aa10.02□□□□□ -0.8
LRCH3-215ENST00000476664 PRSS12P56730 875 aa10.02□□□□□ -0.81
LRCH3-215ENST00000476664 USP46P62068 366 aa10.02□□□□□ -0.81
LRCH3-215ENST00000476664 STK32AQ8WU08 396 aa10.02□□□□□ -0.81
LRCH3-215ENST00000476664 RIMS1Q86UR5 1692 aaKnown RBP10.02□□□□□ -0.81
LRCH3-215ENST00000476664 ABCA10Q8WWZ4 1543 aa10.02□□□□□ -0.81
LRCH3-215ENST00000476664 ABCC2Q92887 1545 aa10.02□□□□□ -0.81
LRCH3-215ENST00000476664 SRCAPQ6ZRS2 3230 aa10.01□□□□□ -0.81
LRCH3-215ENST00000476664 FHAD1B1AJZ9 1412 aa10.01□□□□□ -0.81
LRCH3-215ENST00000476664 RUSC2Q8N2Y8 1516 aa10.01□□□□□ -0.81
LRCH3-215ENST00000476664 KDM4AO75164 1064 aa10□□□□□ -0.81
LRCH3-215ENST00000476664 IER5LQ5T953 404 aa10□□□□□ -0.81
LRCH3-215ENST00000476664 BIN2Q9UBW5 565 aaPredicted RBP10□□□□□ -0.81
LRCH3-215ENST00000476664 STRCQ7RTU9 1775 aa9.99□□□□□ -0.81
LRCH3-215ENST00000476664 ANKRD33BA6NCL7 494 aa9.99□□□□□ -0.81
LRCH3-215ENST00000476664 FDX1P10109 184 aa9.99□□□□□ -0.81
LRCH3-215ENST00000476664 NOM1Q5C9Z4 860 aaKnown RBP9.99□□□□□ -0.81
LRCH3-215ENST00000476664 NFATC2IPQ8NCF5 419 aa9.99□□□□□ -0.81
LRCH3-215ENST00000476664 IQSEC2Q5JU85 1478 aa9.98□□□□□ -0.81
LRCH3-215ENST00000476664 NPAS4Q8IUM7 802 aa9.98□□□□□ -0.81
LRCH3-215ENST00000476664 TSC1Q92574 1164 aa9.98□□□□□ -0.81
LRCH3-215ENST00000476664 CDCA7LQ96GN5 454 aa9.98□□□□□ -0.81
LRCH3-215ENST00000476664 LTBP4Q8N2S1 1624 aa9.97□□□□□ -0.81
LRCH3-215ENST00000476664 FAM196BA6NMK8 535 aa9.97□□□□□ -0.81
LRCH3-215ENST00000476664 DNAJB2P25686 324 aa9.97□□□□□ -0.81
LRCH3-215ENST00000476664 ANKRD13AQ8IZ07 590 aa9.97□□□□□ -0.81
LRCH3-215ENST00000476664 LRRN4Q8WUT4 740 aa9.97□□□□□ -0.81
LRCH3-215ENST00000476664 PLCG2P16885 1265 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 MTMR2Q13614 643 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 NAALADL2Q58DX5 795 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 CLP1Q92989 425 aaKnown RBP9.96□□□□□ -0.82
LRCH3-215ENST00000476664 EYA1Q99502 592 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 POLR3GLQ9BT43 218 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 PPP1R1BQ9UD71 204 aaPredicted RBP9.96□□□□□ -0.82
LRCH3-215ENST00000476664 YEATS2Q9ULM3 1422 aa9.96□□□□□ -0.82
LRCH3-215ENST00000476664 HOXA2O43364 376 aa9.95□□□□□ -0.82
LRCH3-215ENST00000476664 SLF2Q8IX21 1173 aa9.95□□□□□ -0.82
LRCH3-215ENST00000476664 RDH13Q8NBN7 331 aa9.95□□□□□ -0.82
LRCH3-215ENST00000476664 ZDHHC16Q969W1 377 aa9.95□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L3A6NCW0 530 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L4A6NCW7 530 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 SERPINB4P48594 390 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 FOSBP53539 338 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L2Q6R6M4 530 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L1Q7RTZ2 530 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 PLEKHM2Q8IWE5 1019 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 PIP4P2Q8N4L2 257 aa9.94□□□□□ -0.82
LRCH3-215ENST00000476664 PTPRGP23470 1445 aa9.93□□□□□ -0.82
LRCH3-215ENST00000476664 UBAP1LF5GYI3 381 aa9.93□□□□□ -0.82
LRCH3-215ENST00000476664 FAM200AQ8TCP9 573 aa9.93□□□□□ -0.82
LRCH3-215ENST00000476664 ARID4BQ4LE39 1312 aaPredicted RBP9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L15C9J2P7 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L10C9JJH3 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L13C9JLJ4 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L12C9JPN9 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L11C9JVI0 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L21D6R901 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L18D6R9N7 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L22D6RA61 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L17D6RBQ6 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L19D6RCP7 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L20D6RJB6 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 ATP2B4P23634 1241 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L24Q0WX57 530 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 LARP1Q6PKG0 1096 aaKnown RBP9.92□□□□□ -0.82
LRCH3-215ENST00000476664 EPS8L1Q8TE68 723 aa9.92□□□□□ -0.82
LRCH3-215ENST00000476664 CDCA7Q9BWT1 371 aaPredicted RBP9.91□□□□□ -0.82
LRCH3-215ENST00000476664 TMEM134Q9H6X4 195 aa9.91□□□□□ -0.82
LRCH3-215ENST00000476664 MAGI3Q5TCQ9 1506 aa9.91□□□□□ -0.82
LRCH3-215ENST00000476664 CFAP43Q8NDM7 1665 aa9.9□□□□□ -0.82
LRCH3-215ENST00000476664 USP17L5A8MUK1 530 aa9.9□□□□□ -0.82
LRCH3-215ENST00000476664 HSPA1LP34931 641 aa9.9□□□□□ -0.82
LRCH3-215ENST00000476664 NR1H3Q13133 447 aa9.9□□□□□ -0.82
LRCH3-215ENST00000476664 PCDHGC3Q9UN70 934 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms