RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 PHF23Q9BUL5 403 aaPredicted RBP16.12■□□□□ 0.17
SYNE1-222ENST00000474655 NRKQ7Z2Y5 1582 aa16.11■□□□□ 0.17
SYNE1-222ENST00000474655 PIK3R4Q99570 1358 aa16.11■□□□□ 0.17
SYNE1-222ENST00000474655 PRR36Q9H6K5 1346 aa16.11■□□□□ 0.17
SYNE1-222ENST00000474655 SLC26A8Q96RN1 970 aa16.11■□□□□ 0.17
SYNE1-222ENST00000474655 ZNF692Q9BU19 519 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-222ENST00000474655 AMOTL2Q9Y2J4 779 aa16.1■□□□□ 0.17
SYNE1-222ENST00000474655 CCDC27Q2M243 656 aa16.09■□□□□ 0.17
SYNE1-222ENST00000474655 E9PSI1 815 aa16.08■□□□□ 0.17
SYNE1-222ENST00000474655 TSHZ2Q9NRE2 1034 aa16.08■□□□□ 0.17
SYNE1-222ENST00000474655 PLEKHG3A1L390 1219 aa16.08■□□□□ 0.16
SYNE1-222ENST00000474655 WWC1Q8IX03 1113 aa16.08■□□□□ 0.16
SYNE1-222ENST00000474655 NKTRP30414 1462 aaKnown RBP16.08■□□□□ 0.16
SYNE1-222ENST00000474655 CHD2O14647 1828 aaKnown RBP16.07■□□□□ 0.16
SYNE1-222ENST00000474655 AATKQ6ZMQ8 1374 aa16.07■□□□□ 0.16
SYNE1-222ENST00000474655 TCP11L2Q8N4U5 519 aa16.07■□□□□ 0.16
SYNE1-222ENST00000474655 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNE1-222ENST00000474655 SPINK5Q9NQ38 1064 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-222ENST00000474655 NCKAP5LQ9HCH0 1330 aa16.06■□□□□ 0.16
SYNE1-222ENST00000474655 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
SYNE1-222ENST00000474655 U2AF1L5P0DN76 240 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-222ENST00000474655 U2AF1Q01081 240 aaKnown RBP eCLIP16.05■□□□□ 0.16
SYNE1-222ENST00000474655 B4GALNT3Q6L9W6 998 aa16.05■□□□□ 0.16
SYNE1-222ENST00000474655 PLEKHF1Q96S99 279 aa16.05■□□□□ 0.16
SYNE1-222ENST00000474655 POLKQ9UBT6 870 aa16.05■□□□□ 0.16
SYNE1-222ENST00000474655 RGPD8O14715 1765 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-222ENST00000474655 WDR63Q8IWG1 891 aa16.04■□□□□ 0.16
SYNE1-222ENST00000474655 DMRT2Q9Y5R5 561 aa16.04■□□□□ 0.16
SYNE1-222ENST00000474655 NALCNQ8IZF0 1738 aa16.03■□□□□ 0.16
SYNE1-222ENST00000474655 CDK12Q9NYV4 1490 aaPredicted RBP16.03■□□□□ 0.16
SYNE1-222ENST00000474655 SSH2Q76I76 1423 aa16.03■□□□□ 0.16
SYNE1-222ENST00000474655 DIAPH1O60610 1272 aaKnown RBP16.03■□□□□ 0.16
SYNE1-222ENST00000474655 NME9Q86XW9 330 aa16.03■□□□□ 0.16
SYNE1-222ENST00000474655 USP6P35125 1406 aa16.02■□□□□ 0.16
SYNE1-222ENST00000474655 ANKLE2Q86XL3 938 aa16.02■□□□□ 0.15
SYNE1-222ENST00000474655 FMN2Q9NZ56 1722 aa16.01■□□□□ 0.15
SYNE1-222ENST00000474655 ACEP12821 1306 aa16.01■□□□□ 0.15
SYNE1-222ENST00000474655 ANKARQ7Z5J8 1434 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 OVOS2A0A0J9YW53 1432 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 OVOS2Q6IE36 1432 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 EXOC6Q8TAG9 804 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 COG3Q96JB2 828 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 CCDC136Q96JN2 1154 aa16■□□□□ 0.15
SYNE1-222ENST00000474655 PNNQ9H307 717 aaKnown RBP16■□□□□ 0.15
SYNE1-222ENST00000474655 TTC21BQ7Z4L5 1316 aa15.99■□□□□ 0.15
SYNE1-222ENST00000474655 FCHSD2O94868 740 aa15.99■□□□□ 0.15
SYNE1-222ENST00000474655 KCNA6P17658 529 aa15.98■□□□□ 0.15
SYNE1-222ENST00000474655 U2SURPO15042 1029 aaKnown RBP15.98■□□□□ 0.15
SYNE1-222ENST00000474655 ZRANB1Q9UGI0 708 aa15.98■□□□□ 0.15
SYNE1-222ENST00000474655 RRP7AQ9Y3A4 280 aaKnown RBP15.98■□□□□ 0.15
SYNE1-222ENST00000474655 LRRC7Q96NW7 1537 aa15.97■□□□□ 0.15
SYNE1-222ENST00000474655 PLIN1O60240 522 aa15.97■□□□□ 0.15
SYNE1-222ENST00000474655 TMPOP42166 694 aaKnown RBP15.97■□□□□ 0.15
SYNE1-222ENST00000474655 FBLN1P23142 703 aa15.96■□□□□ 0.15
SYNE1-222ENST00000474655 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.96■□□□□ 0.15
SYNE1-222ENST00000474655 USP54Q70EL1 1684 aa15.96■□□□□ 0.15
SYNE1-222ENST00000474655 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.15
SYNE1-222ENST00000474655 USP31Q70CQ4 1352 aa15.96■□□□□ 0.15
SYNE1-222ENST00000474655 IL13P35225 146 aa15.95■□□□□ 0.14
SYNE1-222ENST00000474655 NEUROD2Q15784 382 aa15.95■□□□□ 0.14
SYNE1-222ENST00000474655 EMILIN1Q9Y6C2 1016 aa15.95■□□□□ 0.14
SYNE1-222ENST00000474655 RSPH6AQ9H0K4 717 aa15.95■□□□□ 0.14
SYNE1-222ENST00000474655 TRIM35Q9UPQ4 493 aa15.94■□□□□ 0.14
SYNE1-222ENST00000474655 MAPK8IP3Q9UPT6 1336 aa15.94■□□□□ 0.14
SYNE1-222ENST00000474655 IL16Q14005 1332 aa15.93■□□□□ 0.14
SYNE1-222ENST00000474655 CRBNQ96SW2 442 aa15.92■□□□□ 0.14
SYNE1-222ENST00000474655 MYH16Q9H6N6 1097 aa15.92■□□□□ 0.14
SYNE1-222ENST00000474655 PIK3C2AO00443 1686 aa15.92■□□□□ 0.14
SYNE1-222ENST00000474655 NPHP4O75161 1426 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-222ENST00000474655 NUTM2FA1L443 756 aa15.92■□□□□ 0.14
SYNE1-222ENST00000474655 NWD1Q149M9 1564 aa15.92■□□□□ 0.14
SYNE1-222ENST00000474655 PEAK1Q9H792 1746 aa15.91■□□□□ 0.14
SYNE1-222ENST00000474655 PPM1GO15355 546 aaPredicted RBP15.91■□□□□ 0.14
SYNE1-222ENST00000474655 C20orf194Q5TEA3 1177 aa15.91■□□□□ 0.14
SYNE1-222ENST00000474655 RGPD1P0DJD0 1748 aa15.91■□□□□ 0.14
SYNE1-222ENST00000474655 MARF1Q9Y4F3 1742 aaKnown RBP15.91■□□□□ 0.14
SYNE1-222ENST00000474655 CT47B1P0C2W7 299 aaPredicted RBP15.9■□□□□ 0.14
SYNE1-222ENST00000474655 DLG5Q8TDM6 1919 aa15.9■□□□□ 0.14
SYNE1-222ENST00000474655 BCAR3O75815 825 aa15.9■□□□□ 0.14
SYNE1-222ENST00000474655 RRS1Q15050 365 aaKnown RBP15.9■□□□□ 0.14
SYNE1-222ENST00000474655 ADGRL3Q9HAR2 1447 aa15.89■□□□□ 0.13
SYNE1-222ENST00000474655 PRKAR2BP31323 418 aa15.88■□□□□ 0.13
SYNE1-222ENST00000474655 RARSP54136 660 aaKnown RBP15.88■□□□□ 0.13
SYNE1-222ENST00000474655 RIPK4P57078 832 aa15.88■□□□□ 0.13
SYNE1-222ENST00000474655 PDE3AQ14432 1141 aa15.88■□□□□ 0.13
SYNE1-222ENST00000474655 PMFBP1Q8TBY8 1022 aa15.88■□□□□ 0.13
SYNE1-222ENST00000474655 NGDNQ8NEJ9 315 aaKnown RBP15.87■□□□□ 0.13
SYNE1-222ENST00000474655 RBM19Q9Y4C8 960 aaKnown RBP15.87■□□□□ 0.13
SYNE1-222ENST00000474655 NEFMP07197 916 aa15.86■□□□□ 0.13
SYNE1-222ENST00000474655 FANCIQ9NVI1 1328 aa15.86■□□□□ 0.13
SYNE1-222ENST00000474655 NFE2L2Q16236 605 aa15.85■□□□□ 0.13
SYNE1-222ENST00000474655 PHACTR3Q96KR7 559 aa15.85■□□□□ 0.13
SYNE1-222ENST00000474655 HMOX1P09601 288 aa15.84■□□□□ 0.13
SYNE1-222ENST00000474655 KIF24Q5T7B8 1368 aa15.83■□□□□ 0.13
SYNE1-222ENST00000474655 EIF4A2Q14240 407 aaKnown RBP15.83■□□□□ 0.12
SYNE1-222ENST00000474655 SBNO1A3KN83 1393 aa15.83■□□□□ 0.12
SYNE1-222ENST00000474655 KDM2BQ8NHM5 1336 aa15.81■□□□□ 0.12
SYNE1-222ENST00000474655 FLT4P35916 1363 aa15.81■□□□□ 0.12
SYNE1-222ENST00000474655 TSR2Q969E8 191 aaKnown RBP15.81■□□□□ 0.12
SYNE1-222ENST00000474655 PHF8Q9UPP1 1060 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms