RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
COL12A1-206ENST00000474564 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
COL12A1-206ENST00000474564 NLRP13Q86W25 1043 aa13.97□□□□□ -0.17
COL12A1-206ENST00000474564 KIF1AQ12756 1690 aa13.97□□□□□ -0.17
COL12A1-206ENST00000474564 MYBBP1AQ9BQG0 1328 aaKnown RBP13.96□□□□□ -0.17
COL12A1-206ENST00000474564 TOPAZ1Q8N9V7 1692 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 CCER2I3L3R5 266 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 FYB1O15117 783 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 BRINP3Q76B58 766 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 GGNBP2Q9H3C7 697 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 USP32Q8NFA0 1604 aa13.96□□□□□ -0.17
COL12A1-206ENST00000474564 CD163L1Q9NR16 1453 aa13.95□□□□□ -0.18
COL12A1-206ENST00000474564 NLRP6P59044 892 aa13.95□□□□□ -0.18
COL12A1-206ENST00000474564 CFAP53Q96M91 514 aa13.94□□□□□ -0.18
COL12A1-206ENST00000474564 XIRP1Q702N8 1843 aaKnown RBP13.94□□□□□ -0.18
COL12A1-206ENST00000474564 PIP4K2BP78356 416 aa13.93□□□□□ -0.18
COL12A1-206ENST00000474564 NME9Q86XW9 330 aa13.93□□□□□ -0.18
COL12A1-206ENST00000474564 RGPD8O14715 1765 aaPredicted RBP13.93□□□□□ -0.18
COL12A1-206ENST00000474564 TNNT2P45379 298 aaPredicted RBP13.92□□□□□ -0.18
COL12A1-206ENST00000474564 XPCQ01831 940 aaPredicted RBP13.92□□□□□ -0.18
COL12A1-206ENST00000474564 KCNH5Q8NCM2 988 aa13.92□□□□□ -0.18
COL12A1-206ENST00000474564 SBNO1A3KN83 1393 aa13.92□□□□□ -0.18
COL12A1-206ENST00000474564 PARD3Q8TEW0 1356 aa13.92□□□□□ -0.18
COL12A1-206ENST00000474564 AKAP12Q02952 1782 aa13.91□□□□□ -0.18
COL12A1-206ENST00000474564 HAP1P54257 671 aaPredicted RBP13.91□□□□□ -0.18
COL12A1-206ENST00000474564 LRRC59Q96AG4 307 aaKnown RBP13.91□□□□□ -0.18
COL12A1-206ENST00000474564 ARHGEF10O15013 1369 aa13.91□□□□□ -0.18
COL12A1-206ENST00000474564 MRS2Q9HD23 443 aa13.9□□□□□ -0.18
COL12A1-206ENST00000474564 MON2Q7Z3U7 1717 aa13.9□□□□□ -0.18
COL12A1-206ENST00000474564 PPP2R1AP30153 589 aa13.89□□□□□ -0.19
COL12A1-206ENST00000474564 USP31Q70CQ4 1352 aa13.88□□□□□ -0.19
COL12A1-206ENST00000474564 SSH2Q76I76 1423 aa13.88□□□□□ -0.19
COL12A1-206ENST00000474564 SOS2Q07890 1332 aaPredicted RBP13.88□□□□□ -0.19
COL12A1-206ENST00000474564 NUTM2GQ5VZR2 741 aa13.87□□□□□ -0.19
COL12A1-206ENST00000474564 YTHDC1Q96MU7 727 aaKnown RBP13.87□□□□□ -0.19
COL12A1-206ENST00000474564 NUDCQ9Y266 331 aa13.87□□□□□ -0.19
COL12A1-206ENST00000474564 SPATA31A3Q5VYP0 1347 aa13.87□□□□□ -0.19
COL12A1-206ENST00000474564 PPM1GO15355 546 aaPredicted RBP13.86□□□□□ -0.19
COL12A1-206ENST00000474564 DDX17Q92841 729 aaKnown RBP13.86□□□□□ -0.19
COL12A1-206ENST00000474564 KIF20BQ96Q89 1820 aa13.85□□□□□ -0.19
COL12A1-206ENST00000474564 TNS3Q68CZ2 1445 aa13.85□□□□□ -0.19
COL12A1-206ENST00000474564 SOX12O15370 315 aa13.85□□□□□ -0.19
COL12A1-206ENST00000474564 AMPHP49418 695 aa13.85□□□□□ -0.19
COL12A1-206ENST00000474564 MTHFSP49914 203 aa13.85□□□□□ -0.19
COL12A1-206ENST00000474564 WDR43Q15061 677 aaKnown RBP eCLIP13.85□□□□□ -0.19
COL12A1-206ENST00000474564 AATKQ6ZMQ8 1374 aa13.84□□□□□ -0.19
COL12A1-206ENST00000474564 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
COL12A1-206ENST00000474564 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
COL12A1-206ENST00000474564 NRKQ7Z2Y5 1582 aa13.83□□□□□ -0.2
COL12A1-206ENST00000474564 ROBO1Q9Y6N7 1651 aa13.82□□□□□ -0.2
COL12A1-206ENST00000474564 PXDNQ92626 1479 aa13.82□□□□□ -0.2
COL12A1-206ENST00000474564 GCP02774 474 aa13.82□□□□□ -0.2
COL12A1-206ENST00000474564 CENPBP07199 599 aaPredicted RBP13.82□□□□□ -0.2
COL12A1-206ENST00000474564 PNNQ9H307 717 aaKnown RBP13.82□□□□□ -0.2
COL12A1-206ENST00000474564 OVOS2A0A0J9YW53 1432 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 OVOS2Q6IE36 1432 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 ZBTB7CA1YPR0 619 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 NEFMP07197 916 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 POLKQ9UBT6 870 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 KIF24Q5T7B8 1368 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 ANKRD26Q9UPS8 1709 aa13.81□□□□□ -0.2
COL12A1-206ENST00000474564 DIAPH1O60610 1272 aaKnown RBP13.8□□□□□ -0.2
COL12A1-206ENST00000474564 FAM9BQ8IZU0 186 aa13.8□□□□□ -0.2
COL12A1-206ENST00000474564 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
COL12A1-206ENST00000474564 NHSL1Q5SYE7 1610 aa13.79□□□□□ -0.2
COL12A1-206ENST00000474564 AHDC1Q5TGY3 1603 aaPredicted RBP13.79□□□□□ -0.2
COL12A1-206ENST00000474564 USP19O94966 1318 aa13.78□□□□□ -0.2
COL12A1-206ENST00000474564 PIK3C2AO00443 1686 aa13.77□□□□□ -0.21
COL12A1-206ENST00000474564 U2SURPO15042 1029 aaKnown RBP13.77□□□□□ -0.21
COL12A1-206ENST00000474564 FLT4P35916 1363 aa13.77□□□□□ -0.21
COL12A1-206ENST00000474564 MAP3K19Q56UN5 1328 aa13.77□□□□□ -0.21
COL12A1-206ENST00000474564 TRPM3Q9HCF6 1732 aaPredicted RBP13.77□□□□□ -0.21
COL12A1-206ENST00000474564 EMILIN1Q9Y6C2 1016 aa13.77□□□□□ -0.21
COL12A1-206ENST00000474564 SMG6Q86US8 1419 aaKnown RBP13.76□□□□□ -0.21
COL12A1-206ENST00000474564 ZC3H6P61129 1189 aaKnown RBP13.76□□□□□ -0.21
COL12A1-206ENST00000474564 CABLES1Q8TDN4 633 aa13.76□□□□□ -0.21
COL12A1-206ENST00000474564 IP6K1Q92551 441 aa13.76□□□□□ -0.21
COL12A1-206ENST00000474564 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
COL12A1-206ENST00000474564 PHLPP1O60346 1717 aa13.76□□□□□ -0.21
COL12A1-206ENST00000474564 RTL1A6NKG5 1358 aa13.75□□□□□ -0.21
COL12A1-206ENST00000474564 U2AF1L5P0DN76 240 aaPredicted RBP13.75□□□□□ -0.21
COL12A1-206ENST00000474564 U2AF1Q01081 240 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL12A1-206ENST00000474564 ARHGEF25Q86VW2 580 aa13.75□□□□□ -0.21
COL12A1-206ENST00000474564 PNISRQ8TF01 805 aaKnown RBP13.75□□□□□ -0.21
COL12A1-206ENST00000474564 INSRP06213 1382 aa13.74□□□□□ -0.21
COL12A1-206ENST00000474564 JCADQ9P266 1359 aa13.74□□□□□ -0.21
COL12A1-206ENST00000474564 FBLN1P23142 703 aa13.74□□□□□ -0.21
COL12A1-206ENST00000474564 ALS2Q96Q42 1657 aa13.74□□□□□ -0.21
COL12A1-206ENST00000474564 CDK12Q9NYV4 1490 aaPredicted RBP13.74□□□□□ -0.21
COL12A1-206ENST00000474564 USP54Q70EL1 1684 aa13.73□□□□□ -0.21
COL12A1-206ENST00000474564 HOXC9P31274 260 aa13.73□□□□□ -0.21
COL12A1-206ENST00000474564 EVA1CP58658 441 aa13.73□□□□□ -0.21
COL12A1-206ENST00000474564 CCDC184Q52MB2 194 aa13.73□□□□□ -0.21
COL12A1-206ENST00000474564 SLIT3O75094 1523 aa13.73□□□□□ -0.21
COL12A1-206ENST00000474564 PNPLA6Q8IY17 1366 aa13.72□□□□□ -0.21
COL12A1-206ENST00000474564 NUTM2BA6NNL0 878 aaPredicted RBP13.72□□□□□ -0.21
COL12A1-206ENST00000474564 NUTM2EB1AL46 878 aaPredicted RBP13.72□□□□□ -0.21
COL12A1-206ENST00000474564 CSB-PGBD3P0DP91 1061 aa13.72□□□□□ -0.21
COL12A1-206ENST00000474564 NUTM2AQ8IVF1 878 aaPredicted RBP13.72□□□□□ -0.21
COL12A1-206ENST00000474564 CPDO75976 1380 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms