RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 NGLY1Q96IV0 654 aa19.2■□□□□ 0.66
USF1-205ENST00000473969 LRP6O75581 1613 aa19.2■□□□□ 0.66
USF1-205ENST00000473969 BRD4O60885 1362 aaPredicted RBP19.19■□□□□ 0.66
USF1-205ENST00000473969 ABTB2Q8N961 1025 aa19.19■□□□□ 0.66
USF1-205ENST00000473969 ZNF772Q68DY9 489 aaPredicted RBP19.18■□□□□ 0.66
USF1-205ENST00000473969 CABLES1Q8TDN4 633 aa19.18■□□□□ 0.66
USF1-205ENST00000473969 TERF2IPQ9NYB0 399 aa19.18■□□□□ 0.66
USF1-205ENST00000473969 HSPA5P11021 654 aaKnown RBP19.17■□□□□ 0.66
USF1-205ENST00000473969 COL22A1Q8NFW1 1626 aaPredicted RBP19.17■□□□□ 0.66
USF1-205ENST00000473969 SLC12A5Q9H2X9 1139 aa19.16■□□□□ 0.66
USF1-205ENST00000473969 KTN1Q86UP2 1357 aaKnown RBP19.16■□□□□ 0.66
USF1-205ENST00000473969 NUTM2GQ5VZR2 741 aa19.15■□□□□ 0.66
USF1-205ENST00000473969 NLRP13Q86W25 1043 aa19.15■□□□□ 0.66
USF1-205ENST00000473969 AFF2P51816 1311 aa19.15■□□□□ 0.66
USF1-205ENST00000473969 NINLQ9Y2I6 1382 aa19.15■□□□□ 0.66
USF1-205ENST00000473969 USP6P35125 1406 aa19.15■□□□□ 0.66
USF1-205ENST00000473969 TRPM3Q9HCF6 1732 aaPredicted RBP19.14■□□□□ 0.65
USF1-205ENST00000473969 POLR3GLQ9BT43 218 aa19.13■□□□□ 0.65
USF1-205ENST00000473969 RGS17Q9UGC6 210 aaPredicted RBP19.13■□□□□ 0.65
USF1-205ENST00000473969 NLRP6P59044 892 aa19.12■□□□□ 0.65
USF1-205ENST00000473969 TTC21BQ7Z4L5 1316 aa19.11■□□□□ 0.65
USF1-205ENST00000473969 TTC21AQ8NDW8 1320 aa19.11■□□□□ 0.65
USF1-205ENST00000473969 USP21Q9UK80 565 aa19.11■□□□□ 0.65
USF1-205ENST00000473969 CPSF1Q10570 1443 aaKnown RBP19.1■□□□□ 0.65
USF1-205ENST00000473969 ALS2Q96Q42 1657 aa19.09■□□□□ 0.65
USF1-205ENST00000473969 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.09■□□□□ 0.65
USF1-205ENST00000473969 POTEAQ6S8J7 498 aa19.08■□□□□ 0.64
USF1-205ENST00000473969 FNBP4Q8N3X1 1017 aaPredicted RBP19.08■□□□□ 0.64
USF1-205ENST00000473969 QTRT2Q9H974 415 aaKnown RBP19.08■□□□□ 0.64
USF1-205ENST00000473969 RXRBP28702 533 aa19.06■□□□□ 0.64
USF1-205ENST00000473969 ZC3H6P61129 1189 aaKnown RBP19.06■□□□□ 0.64
USF1-205ENST00000473969 PRDM11Q9NQV5 511 aa19.06■□□□□ 0.64
USF1-205ENST00000473969 TRPC5Q9UL62 973 aaPredicted RBP19.06■□□□□ 0.64
USF1-205ENST00000473969 SSH2Q76I76 1423 aa19.06■□□□□ 0.64
USF1-205ENST00000473969 A0A1W2PP64 1363 aa19.06■□□□□ 0.64
USF1-205ENST00000473969 GCP02774 474 aa19.05■□□□□ 0.64
USF1-205ENST00000473969 EDC4Q6P2E9 1401 aaKnown RBP19.05■□□□□ 0.64
USF1-205ENST00000473969 ANKRD36BQ8N2N9 1353 aa19.05■□□□□ 0.64
USF1-205ENST00000473969 FAM83GA6ND36 823 aa19.04■□□□□ 0.64
USF1-205ENST00000473969 AKAP12Q02952 1782 aa19.04■□□□□ 0.64
USF1-205ENST00000473969 CD163L1Q9NR16 1453 aa19.03■□□□□ 0.64
USF1-205ENST00000473969 USP19O94966 1318 aa19.03■□□□□ 0.64
USF1-205ENST00000473969 UNC5CLQ8IV45 518 aa19.03■□□□□ 0.64
USF1-205ENST00000473969 KCNH5Q8NCM2 988 aa19.03■□□□□ 0.64
USF1-205ENST00000473969 ZBTB7CA1YPR0 619 aa19.02■□□□□ 0.64
USF1-205ENST00000473969 MARF1Q9Y4F3 1742 aaKnown RBP19.01■□□□□ 0.63
USF1-205ENST00000473969 RBM6P78332 1123 aaKnown RBP19.01■□□□□ 0.63
USF1-205ENST00000473969 NME9Q86XW9 330 aa19.01■□□□□ 0.63
USF1-205ENST00000473969 BTG4Q9NY30 223 aa19.01■□□□□ 0.63
USF1-205ENST00000473969 CCDC9Q9Y3X0 531 aaKnown RBP19.01■□□□□ 0.63
USF1-205ENST00000473969 KIAA0232Q92628 1395 aa19.01■□□□□ 0.63
USF1-205ENST00000473969 SOX12O15370 315 aa19■□□□□ 0.63
USF1-205ENST00000473969 CHRNA2Q15822 529 aa18.99■□□□□ 0.63
USF1-205ENST00000473969 MON2Q7Z3U7 1717 aa18.99■□□□□ 0.63
USF1-205ENST00000473969 ABCA3Q99758 1704 aa18.99■□□□□ 0.63
USF1-205ENST00000473969 EVA1CP58658 441 aa18.98■□□□□ 0.63
USF1-205ENST00000473969 COG3Q96JB2 828 aa18.98■□□□□ 0.63
USF1-205ENST00000473969 SLIT2O94813 1529 aa18.98■□□□□ 0.63
USF1-205ENST00000473969 BCL9LQ86UU0 1499 aa18.97■□□□□ 0.63
USF1-205ENST00000473969 USP31Q70CQ4 1352 aa18.97■□□□□ 0.63
USF1-205ENST00000473969 ZEB1P37275 1124 aaPredicted RBP18.97■□□□□ 0.63
USF1-205ENST00000473969 PHRF1Q9P1Y6 1649 aaKnown RBP18.96■□□□□ 0.63
USF1-205ENST00000473969 CPDO75976 1380 aa18.96■□□□□ 0.63
USF1-205ENST00000473969 PIK3C2AO00443 1686 aa18.96■□□□□ 0.63
USF1-205ENST00000473969 GJD4Q96KN9 370 aaPredicted RBP18.96■□□□□ 0.63
USF1-205ENST00000473969 ZRANB1Q9UGI0 708 aa18.96■□□□□ 0.63
USF1-205ENST00000473969 NRKQ7Z2Y5 1582 aa18.96■□□□□ 0.63
USF1-205ENST00000473969 ATRNO75882 1429 aa18.95■□□□□ 0.62
USF1-205ENST00000473969 VPS72Q15906 364 aa18.95■□□□□ 0.62
USF1-205ENST00000473969 STRN4Q9NRL3 753 aa18.95■□□□□ 0.62
USF1-205ENST00000473969 COL14A1Q05707 1796 aaKnown RBP18.95■□□□□ 0.62
USF1-205ENST00000473969 C11orf95C9JLR9 678 aaPredicted RBP18.94■□□□□ 0.62
USF1-205ENST00000473969 SLIT3O75094 1523 aa18.94■□□□□ 0.62
USF1-205ENST00000473969 CRYBG1Q9Y4K1 1723 aa18.94■□□□□ 0.62
USF1-205ENST00000473969 NSD3Q9BZ95 1437 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 FYB1O15117 783 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 CARD14Q9BXL6 1004 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 GGNBP2Q9H3C7 697 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 PANK3Q9H999 370 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 CGNL1Q0VF96 1302 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 KIF7Q2M1P5 1343 aa18.92■□□□□ 0.62
USF1-205ENST00000473969 NWD2Q9ULI1 1742 aa18.91■□□□□ 0.62
USF1-205ENST00000473969 ARHGEF25Q86VW2 580 aa18.91■□□□□ 0.62
USF1-205ENST00000473969 PLCH1Q4KWH8 1693 aa18.91■□□□□ 0.62
USF1-205ENST00000473969 AATKQ6ZMQ8 1374 aa18.9■□□□□ 0.62
USF1-205ENST00000473969 A0A0G2JS52 829 aa18.89■□□□□ 0.61
USF1-205ENST00000473969 MYT1Q01538 1121 aa18.89■□□□□ 0.61
USF1-205ENST00000473969 CDK12Q9NYV4 1490 aaPredicted RBP18.89■□□□□ 0.61
USF1-205ENST00000473969 MYOM1P52179 1685 aa18.89■□□□□ 0.61
USF1-205ENST00000473969 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.88■□□□□ 0.61
USF1-205ENST00000473969 KNSTRNQ9Y448 316 aa18.88■□□□□ 0.61
USF1-205ENST00000473969 OVOS2A0A0J9YW53 1432 aa18.88■□□□□ 0.61
USF1-205ENST00000473969 OVOS2Q6IE36 1432 aa18.88■□□□□ 0.61
USF1-205ENST00000473969 CSB-PGBD3P0DP91 1061 aa18.87■□□□□ 0.61
USF1-205ENST00000473969 SPATA31A5Q5VU36 1347 aa18.86■□□□□ 0.61
USF1-205ENST00000473969 SPATA31A7Q8IWB4 1347 aa18.86■□□□□ 0.61
USF1-205ENST00000473969 CCDC7Q96M83 1385 aa18.85■□□□□ 0.61
USF1-205ENST00000473969 AMPHP49418 695 aa18.85■□□□□ 0.61
USF1-205ENST00000473969 USP35Q9P2H5 1018 aa18.85■□□□□ 0.61
USF1-205ENST00000473969 FAM98CQ17RN3 349 aaKnown RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms