RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 HSPA5P11021 654 aaKnown RBP21.38■■□□□ 1.01
SDC3-203ENST00000471567 TMC1Q8TDI8 760 aa21.38■■□□□ 1.01
SDC3-203ENST00000471567 ADAMTS2O95450 1211 aa21.37■■□□□ 1.01
SDC3-203ENST00000471567 SLC12A5Q9H2X9 1139 aa21.36■■□□□ 1.01
SDC3-203ENST00000471567 RGS17Q9UGC6 210 aaPredicted RBP21.36■■□□□ 1.01
SDC3-203ENST00000471567 SSH2Q76I76 1423 aa21.36■■□□□ 1.01
SDC3-203ENST00000471567 HAP1P54257 671 aaPredicted RBP21.35■■□□□ 1.01
SDC3-203ENST00000471567 TERF2IPQ9NYB0 399 aa21.35■■□□□ 1.01
SDC3-203ENST00000471567 HDGFL2Q7Z4V5 671 aaPredicted RBP21.34■■□□□ 1.01
SDC3-203ENST00000471567 ABTB2Q8N961 1025 aa21.34■■□□□ 1.01
SDC3-203ENST00000471567 CABLES1Q8TDN4 633 aa21.34■■□□□ 1.01
SDC3-203ENST00000471567 C8orf37Q96NL8 207 aa21.34■■□□□ 1.01
SDC3-203ENST00000471567 KTN1Q86UP2 1357 aaKnown RBP21.34■■□□□ 1.01
SDC3-203ENST00000471567 AKAP12Q02952 1782 aa21.33■■□□□ 1.01
SDC3-203ENST00000471567 ZNF772Q68DY9 489 aaPredicted RBP21.33■■□□□ 1.01
SDC3-203ENST00000471567 NGLY1Q96IV0 654 aa21.33■■□□□ 1.01
SDC3-203ENST00000471567 CD163L1Q9NR16 1453 aa21.32■■□□□ 1
SDC3-203ENST00000471567 AFF2P51816 1311 aa21.31■■□□□ 1
SDC3-203ENST00000471567 TTC21BQ7Z4L5 1316 aa21.31■■□□□ 1
SDC3-203ENST00000471567 TTC21AQ8NDW8 1320 aa21.31■■□□□ 1
SDC3-203ENST00000471567 NLRP13Q86W25 1043 aa21.31■■□□□ 1
SDC3-203ENST00000471567 FNBP4Q8N3X1 1017 aaPredicted RBP21.3■■□□□ 1
SDC3-203ENST00000471567 PLEKHG5O94827 1062 aa21.29■■□□□ 1
SDC3-203ENST00000471567 NUTM2GQ5VZR2 741 aa21.29■■□□□ 1
SDC3-203ENST00000471567 ABCA3Q99758 1704 aa21.29■■□□□ 1
SDC3-203ENST00000471567 MARF1Q9Y4F3 1742 aaKnown RBP21.29■■□□□ 1
SDC3-203ENST00000471567 A0A1W2PP64 1363 aa21.28■■□□□ 1
SDC3-203ENST00000471567 MON2Q7Z3U7 1717 aa21.28■■□□□ 1
SDC3-203ENST00000471567 USP19O94966 1318 aa21.28■■□□□ 1
SDC3-203ENST00000471567 NLRP6P59044 892 aa21.27■■□□□ 1
SDC3-203ENST00000471567 POTEAQ6S8J7 498 aa21.27■■□□□ 1
SDC3-203ENST00000471567 EDC4Q6P2E9 1401 aaKnown RBP21.27■■□□□ 1
SDC3-203ENST00000471567 CRYBG1Q9Y4K1 1723 aa21.26■□□□□ 0.99
SDC3-203ENST00000471567 ANKRD36BQ8N2N9 1353 aa21.26■□□□□ 0.99
SDC3-203ENST00000471567 NRKQ7Z2Y5 1582 aa21.26■□□□□ 0.99
SDC3-203ENST00000471567 USP21Q9UK80 565 aa21.25■□□□□ 0.99
SDC3-203ENST00000471567 FAM83GA6ND36 823 aa21.23■□□□□ 0.99
SDC3-203ENST00000471567 ILDR2Q71H61 639 aa21.23■□□□□ 0.99
SDC3-203ENST00000471567 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.23■□□□□ 0.99
SDC3-203ENST00000471567 SLIT2O94813 1529 aa21.23■□□□□ 0.99
SDC3-203ENST00000471567 PHRF1Q9P1Y6 1649 aaKnown RBP21.22■□□□□ 0.99
SDC3-203ENST00000471567 PIK3C2AO00443 1686 aa21.22■□□□□ 0.99
SDC3-203ENST00000471567 GCP02774 474 aa21.22■□□□□ 0.99
SDC3-203ENST00000471567 USP31Q70CQ4 1352 aa21.22■□□□□ 0.99
SDC3-203ENST00000471567 QTRT2Q9H974 415 aaKnown RBP21.21■□□□□ 0.99
SDC3-203ENST00000471567 BCL9LQ86UU0 1499 aa21.2■□□□□ 0.98
SDC3-203ENST00000471567 UNC5CLQ8IV45 518 aa21.2■□□□□ 0.98
SDC3-203ENST00000471567 PRDM11Q9NQV5 511 aa21.2■□□□□ 0.98
SDC3-203ENST00000471567 TRPC5Q9UL62 973 aaPredicted RBP21.2■□□□□ 0.98
SDC3-203ENST00000471567 CPDO75976 1380 aa21.2■□□□□ 0.98
SDC3-203ENST00000471567 SLIT3O75094 1523 aa21.19■□□□□ 0.98
SDC3-203ENST00000471567 NME9Q86XW9 330 aa21.19■□□□□ 0.98
SDC3-203ENST00000471567 KCNH5Q8NCM2 988 aa21.19■□□□□ 0.98
SDC3-203ENST00000471567 KIAA0232Q92628 1395 aa21.19■□□□□ 0.98
SDC3-203ENST00000471567 MYOM1P52179 1685 aa21.18■□□□□ 0.98
SDC3-203ENST00000471567 C11orf95C9JLR9 678 aaPredicted RBP21.18■□□□□ 0.98
SDC3-203ENST00000471567 ZC3H6P61129 1189 aaKnown RBP21.18■□□□□ 0.98
SDC3-203ENST00000471567 POLR3GLQ9BT43 218 aa21.18■□□□□ 0.98
SDC3-203ENST00000471567 COL14A1Q05707 1796 aaKnown RBP21.18■□□□□ 0.98
SDC3-203ENST00000471567 RXRBP28702 533 aa21.17■□□□□ 0.98
SDC3-203ENST00000471567 ATRNO75882 1429 aa21.17■□□□□ 0.98
SDC3-203ENST00000471567 NWD2Q9ULI1 1742 aa21.16■□□□□ 0.98
SDC3-203ENST00000471567 RBM6P78332 1123 aaKnown RBP21.16■□□□□ 0.98
SDC3-203ENST00000471567 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.15■□□□□ 0.98
SDC3-203ENST00000471567 USP54Q70EL1 1684 aa21.15■□□□□ 0.98
SDC3-203ENST00000471567 BTG4Q9NY30 223 aa21.15■□□□□ 0.98
SDC3-203ENST00000471567 ZRANB1Q9UGI0 708 aa21.15■□□□□ 0.98
SDC3-203ENST00000471567 PLCH1Q4KWH8 1693 aa21.15■□□□□ 0.98
SDC3-203ENST00000471567 CARD14Q9BXL6 1004 aa21.14■□□□□ 0.97
SDC3-203ENST00000471567 CHRNA2Q15822 529 aa21.13■□□□□ 0.97
SDC3-203ENST00000471567 VPS72Q15906 364 aa21.13■□□□□ 0.97
SDC3-203ENST00000471567 OVOS2A0A0J9YW53 1432 aa21.12■□□□□ 0.97
SDC3-203ENST00000471567 OVOS2Q6IE36 1432 aa21.12■□□□□ 0.97
SDC3-203ENST00000471567 KIF7Q2M1P5 1343 aa21.12■□□□□ 0.97
SDC3-203ENST00000471567 ZEB1P37275 1124 aaPredicted RBP21.12■□□□□ 0.97
SDC3-203ENST00000471567 CDK12Q9NYV4 1490 aaPredicted RBP21.12■□□□□ 0.97
SDC3-203ENST00000471567 FYB1O15117 783 aa21.11■□□□□ 0.97
SDC3-203ENST00000471567 ARHGEF25Q86VW2 580 aa21.11■□□□□ 0.97
SDC3-203ENST00000471567 COG3Q96JB2 828 aa21.11■□□□□ 0.97
SDC3-203ENST00000471567 GJD4Q96KN9 370 aaPredicted RBP21.11■□□□□ 0.97
SDC3-203ENST00000471567 AATKQ6ZMQ8 1374 aa21.1■□□□□ 0.97
SDC3-203ENST00000471567 NSD3Q9BZ95 1437 aa21.1■□□□□ 0.97
SDC3-203ENST00000471567 NFAT5O94916 1531 aa21.09■□□□□ 0.97
SDC3-203ENST00000471567 PANK3Q9H999 370 aa21.09■□□□□ 0.97
SDC3-203ENST00000471567 SOX12O15370 315 aa21.08■□□□□ 0.97
SDC3-203ENST00000471567 NRAPQ86VF7 1730 aa21.08■□□□□ 0.97
SDC3-203ENST00000471567 LMO7Q8WWI1 1683 aa21.07■□□□□ 0.96
SDC3-203ENST00000471567 CCDC7Q96M83 1385 aa21.07■□□□□ 0.96
SDC3-203ENST00000471567 CGNL1Q0VF96 1302 aa21.06■□□□□ 0.96
SDC3-203ENST00000471567 CAMTA1Q9Y6Y1 1673 aa21.06■□□□□ 0.96
SDC3-203ENST00000471567 ZBTB7CA1YPR0 619 aa21.06■□□□□ 0.96
SDC3-203ENST00000471567 EVA1CP58658 441 aa21.06■□□□□ 0.96
SDC3-203ENST00000471567 GGNBP2Q9H3C7 697 aa21.06■□□□□ 0.96
SDC3-203ENST00000471567 CCDC9Q9Y3X0 531 aaKnown RBP21.05■□□□□ 0.96
SDC3-203ENST00000471567 STRN4Q9NRL3 753 aa21.04■□□□□ 0.96
SDC3-203ENST00000471567 ABCC6O95255 1503 aa21.04■□□□□ 0.96
SDC3-203ENST00000471567 SPATA31A5Q5VU36 1347 aa21.04■□□□□ 0.96
SDC3-203ENST00000471567 WASHC2AQ641Q2 1341 aa21.04■□□□□ 0.96
SDC3-203ENST00000471567 SPATA31A7Q8IWB4 1347 aa21.04■□□□□ 0.96
SDC3-203ENST00000471567 COL18A1P39060 1754 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms