RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 NCKAP5LQ9HCH0 1330 aa22.26■■□□□ 1.15
SMARCD3-206ENST00000470588 NCBP3Q53F19 620 aaKnown RBP22.25■■□□□ 1.15
SMARCD3-206ENST00000470588 AKAP12Q02952 1782 aa22.25■■□□□ 1.15
SMARCD3-206ENST00000470588 MON2Q7Z3U7 1717 aa22.24■■□□□ 1.15
SMARCD3-206ENST00000470588 E9PSI1 815 aa22.23■■□□□ 1.15
SMARCD3-206ENST00000470588 KDM4FA0A1W2PPD8 638 aa22.22■■□□□ 1.15
SMARCD3-206ENST00000470588 NWD1Q149M9 1564 aa22.22■■□□□ 1.15
SMARCD3-206ENST00000470588 EDC4Q6P2E9 1401 aaKnown RBP22.22■■□□□ 1.15
SMARCD3-206ENST00000470588 CPSF1Q10570 1443 aaKnown RBP22.22■■□□□ 1.15
SMARCD3-206ENST00000470588 CCDC136Q96JN2 1154 aa22.21■■□□□ 1.15
SMARCD3-206ENST00000470588 ZNF692Q9BU19 519 aaPredicted RBP22.21■■□□□ 1.15
SMARCD3-206ENST00000470588 PRR36Q9H6K5 1346 aa22.2■■□□□ 1.14
SMARCD3-206ENST00000470588 FMN2Q9NZ56 1722 aa22.2■■□□□ 1.14
SMARCD3-206ENST00000470588 NALCNQ8IZF0 1738 aa22.19■■□□□ 1.14
SMARCD3-206ENST00000470588 ANKARQ7Z5J8 1434 aa22.19■■□□□ 1.14
SMARCD3-206ENST00000470588 WWC1Q8IX03 1113 aa22.19■■□□□ 1.14
SMARCD3-206ENST00000470588 TCP11L2Q8N4U5 519 aa22.18■■□□□ 1.14
SMARCD3-206ENST00000470588 U2AF1L5P0DN76 240 aaPredicted RBP22.17■■□□□ 1.14
SMARCD3-206ENST00000470588 U2AF1Q01081 240 aaKnown RBP eCLIP22.17■■□□□ 1.14
SMARCD3-206ENST00000470588 CCDC27Q2M243 656 aa22.17■■□□□ 1.14
SMARCD3-206ENST00000470588 PLEKHG3A1L390 1219 aa22.16■■□□□ 1.14
SMARCD3-206ENST00000470588 WDR63Q8IWG1 891 aa22.16■■□□□ 1.14
SMARCD3-206ENST00000470588 EXOC6Q8TAG9 804 aa22.16■■□□□ 1.14
SMARCD3-206ENST00000470588 PHF23Q9BUL5 403 aaPredicted RBP22.16■■□□□ 1.14
SMARCD3-206ENST00000470588 PNPLA6Q8IY17 1366 aa22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 NKTRP30414 1462 aaKnown RBP22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 ADGRL3Q9HAR2 1447 aa22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 NUTM2FA1L443 756 aa22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 SPINK5Q9NQ38 1064 aaPredicted RBP22.15■■□□□ 1.14
SMARCD3-206ENST00000470588 IQSEC2Q5JU85 1478 aa22.14■■□□□ 1.14
SMARCD3-206ENST00000470588 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.14■■□□□ 1.13
SMARCD3-206ENST00000470588 COL3A1P02461 1466 aaPredicted RBP22.14■■□□□ 1.13
SMARCD3-206ENST00000470588 RGPD8O14715 1765 aaPredicted RBP22.14■■□□□ 1.13
SMARCD3-206ENST00000470588 LMTK3Q96Q04 1460 aa22.13■■□□□ 1.13
SMARCD3-206ENST00000470588 DIAPH1O60610 1272 aaKnown RBP22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 PNNQ9H307 717 aaKnown RBP22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 NRKQ7Z2Y5 1582 aa22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 ACEP12821 1306 aa22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 PLIN1O60240 522 aa22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 C14orf37Q86TY3 774 aa22.12■■□□□ 1.13
SMARCD3-206ENST00000470588 HSPA2P54652 639 aa22.1■■□□□ 1.13
SMARCD3-206ENST00000470588 U2SURPO15042 1029 aaKnown RBP22.1■■□□□ 1.13
SMARCD3-206ENST00000470588 POLKQ9UBT6 870 aa22.1■■□□□ 1.13
SMARCD3-206ENST00000470588 DMRT2Q9Y5R5 561 aa22.1■■□□□ 1.13
SMARCD3-206ENST00000470588 USP6P35125 1406 aa22.09■■□□□ 1.13
SMARCD3-206ENST00000470588 NEUROD2Q15784 382 aa22.09■■□□□ 1.13
SMARCD3-206ENST00000470588 PLEKHF1Q96S99 279 aa22.09■■□□□ 1.13
SMARCD3-206ENST00000470588 RRP7AQ9Y3A4 280 aaKnown RBP22.09■■□□□ 1.13
SMARCD3-206ENST00000470588 PROSER2Q86WR7 435 aaPredicted RBP22.08■■□□□ 1.13
SMARCD3-206ENST00000470588 NGDNQ8NEJ9 315 aaKnown RBP22.08■■□□□ 1.13
SMARCD3-206ENST00000470588 COG3Q96JB2 828 aa22.07■■□□□ 1.12
SMARCD3-206ENST00000470588 AATKQ6ZMQ8 1374 aa22.07■■□□□ 1.12
SMARCD3-206ENST00000470588 RBM19Q9Y4C8 960 aaKnown RBP22.07■■□□□ 1.12
SMARCD3-206ENST00000470588 NME9Q86XW9 330 aa22.06■■□□□ 1.12
SMARCD3-206ENST00000470588 CRBNQ96SW2 442 aa22.06■■□□□ 1.12
SMARCD3-206ENST00000470588 TTC21BQ7Z4L5 1316 aa22.05■■□□□ 1.12
SMARCD3-206ENST00000470588 PMFBP1Q8TBY8 1022 aa22.04■■□□□ 1.12
SMARCD3-206ENST00000470588 TTC21AQ8NDW8 1320 aa22.04■■□□□ 1.12
SMARCD3-206ENST00000470588 FCHSD2O94868 740 aa22.04■■□□□ 1.12
SMARCD3-206ENST00000470588 STRCQ7RTU9 1775 aa22.03■■□□□ 1.12
SMARCD3-206ENST00000470588 TMPOP42166 694 aaKnown RBP22.03■■□□□ 1.12
SMARCD3-206ENST00000470588 MAPK8IP3Q9UPT6 1336 aa22.03■■□□□ 1.12
SMARCD3-206ENST00000470588 MYH16Q9H6N6 1097 aa22.02■■□□□ 1.12
SMARCD3-206ENST00000470588 RBM33Q96EV2 1170 aaKnown RBP22.02■■□□□ 1.11
SMARCD3-206ENST00000470588 NCOA3Q9Y6Q9 1424 aa22.01■■□□□ 1.11
SMARCD3-206ENST00000470588 ZRANB1Q9UGI0 708 aa22.01■■□□□ 1.11
SMARCD3-206ENST00000470588 MAP2P11137 1827 aaKnown RBP22.01■■□□□ 1.11
SMARCD3-206ENST00000470588 C20orf194Q5TEA3 1177 aa22■■□□□ 1.11
SMARCD3-206ENST00000470588 STRCP1A6NGW2 1772 aa22■■□□□ 1.11
SMARCD3-206ENST00000470588 PPM1GO15355 546 aaPredicted RBP21.99■■□□□ 1.11
SMARCD3-206ENST00000470588 PHF8Q9UPP1 1060 aa21.99■■□□□ 1.11
SMARCD3-206ENST00000470588 FBLN1P23142 703 aa21.99■■□□□ 1.11
SMARCD3-206ENST00000470588 SSH2Q76I76 1423 aa21.99■■□□□ 1.11
SMARCD3-206ENST00000470588 IL16Q14005 1332 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 BCAR3O75815 825 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 C19orf44Q9H6X5 657 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 CDK12Q9NYV4 1490 aaPredicted RBP21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 IL13P35225 146 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 TRIM35Q9UPQ4 493 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 EMILIN1Q9Y6C2 1016 aa21.97■■□□□ 1.11
SMARCD3-206ENST00000470588 OVOS2A0A0J9YW53 1432 aa21.96■■□□□ 1.11
SMARCD3-206ENST00000470588 OVOS2Q6IE36 1432 aa21.96■■□□□ 1.11
SMARCD3-206ENST00000470588 NEFMP07197 916 aa21.96■■□□□ 1.11
SMARCD3-206ENST00000470588 RSPH6AQ9H0K4 717 aa21.96■■□□□ 1.11
SMARCD3-206ENST00000470588 DCCP43146 1447 aa21.95■■□□□ 1.11
SMARCD3-206ENST00000470588 TMEM94Q12767 1356 aa21.95■■□□□ 1.1
SMARCD3-206ENST00000470588 KIF1AQ12756 1690 aa21.95■■□□□ 1.1
SMARCD3-206ENST00000470588 PDE3AQ14432 1141 aa21.95■■□□□ 1.1
SMARCD3-206ENST00000470588 ESCO1Q5FWF5 840 aa21.95■■□□□ 1.1
SMARCD3-206ENST00000470588 CT47B1P0C2W7 299 aaPredicted RBP21.94■■□□□ 1.1
SMARCD3-206ENST00000470588 RIPK4P57078 832 aa21.94■■□□□ 1.1
SMARCD3-206ENST00000470588 PIK3C2AO00443 1686 aa21.93■■□□□ 1.1
SMARCD3-206ENST00000470588 ATF3P18847 181 aa21.93■■□□□ 1.1
SMARCD3-206ENST00000470588 RARSP54136 660 aaKnown RBP21.93■■□□□ 1.1
SMARCD3-206ENST00000470588 USP31Q70CQ4 1352 aa21.92■■□□□ 1.1
SMARCD3-206ENST00000470588 PRKAR2BP31323 418 aa21.92■■□□□ 1.1
SMARCD3-206ENST00000470588 USP54Q70EL1 1684 aa21.91■■□□□ 1.1
SMARCD3-206ENST00000470588 PSME1Q06323 249 aa21.89■■□□□ 1.1
SMARCD3-206ENST00000470588 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms