RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KDM5CP41229 1560 aa7.1□□□□□ -1.27
SF3B1-208ENST00000470268 RBM33Q96EV2 1170 aaKnown RBP7.09□□□□□ -1.27
SF3B1-208ENST00000470268 SLC24A3Q9HC58 644 aa7.09□□□□□ -1.27
SF3B1-208ENST00000470268 SPAG9O60271 1321 aaKnown RBP7.09□□□□□ -1.27
SF3B1-208ENST00000470268 NAIPQ13075 1403 aa7.09□□□□□ -1.27
SF3B1-208ENST00000470268 ADGRL2O95490 1459 aa7.09□□□□□ -1.28
SF3B1-208ENST00000470268 CROCC2H7BZ55 1655 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 EN1Q05925 392 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-208ENST00000470268 ROCK1Q13464 1354 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 ZFYVE16Q7Z3T8 1539 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 RICTORQ6R327 1708 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 CERKQ8TCT0 537 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 HFM1A2PYH4 1435 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 RTEL1-TNFRSF6BF6WH68 1400 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 YEATS2Q9ULM3 1422 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 MLH3Q9UHC1 1453 aa7.08□□□□□ -1.28
SF3B1-208ENST00000470268 MAST1Q9Y2H9 1570 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 GRXCR2A6NFK2 248 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 Q6ZNB5 142 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 DDX12PQ92771 950 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 ANKRD30AQ9BXX3 1397 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 ATP7AQ04656 1500 aa7.07□□□□□ -1.28
SF3B1-208ENST00000470268 INO80Q9ULG1 1556 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-208ENST00000470268 OSBPP22059 807 aa7.06□□□□□ -1.28
SF3B1-208ENST00000470268 PPP4CP60510 307 aa7.06□□□□□ -1.28
SF3B1-208ENST00000470268 KIF15Q9NS87 1388 aa7.06□□□□□ -1.28
SF3B1-208ENST00000470268 KIDINS220Q9ULH0 1771 aa7.06□□□□□ -1.28
SF3B1-208ENST00000470268 ZMYM4Q5VZL5 1548 aa7.06□□□□□ -1.28
SF3B1-208ENST00000470268 BRPF1P55201 1214 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-208ENST00000470268 KDM6BO15054 1643 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 HECW2Q9P2P5 1572 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 SETD5Q9C0A6 1442 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 RAB3GAP2Q9H2M9 1393 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 MAP3K7O43318 606 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 TMEM132AQ24JP5 1023 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 GPR37O15354 613 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 AK7Q96M32 723 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 TSKSQ9UJT2 592 aa7.05□□□□□ -1.28
SF3B1-208ENST00000470268 PLXNC1O60486 1568 aa7.04□□□□□ -1.28
SF3B1-208ENST00000470268 ANKRD50Q9ULJ7 1429 aa7.04□□□□□ -1.28
SF3B1-208ENST00000470268 ABCA6Q8N139 1617 aa7.04□□□□□ -1.28
SF3B1-208ENST00000470268 MAGI2Q86UL8 1455 aa7.04□□□□□ -1.28
SF3B1-208ENST00000470268 ADGBQ8N7X0 1667 aa7.04□□□□□ -1.28
SF3B1-208ENST00000470268 DHX29Q7Z478 1369 aaKnown RBP7.04□□□□□ -1.28
SF3B1-208ENST00000470268 DIP2CQ9Y2E4 1556 aa7.03□□□□□ -1.28
SF3B1-208ENST00000470268 PRSS12P56730 875 aa7.03□□□□□ -1.28
SF3B1-208ENST00000470268 DUOX2Q9NRD8 1548 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 GCC2Q8IWJ2 1684 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 A2MP01023 1474 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 NUTM2FA1L443 756 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 KRI1Q8N9T8 703 aaKnown RBP7.02□□□□□ -1.29
SF3B1-208ENST00000470268 NECTIN2Q92692 538 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 CDCA7LQ96GN5 454 aa7.02□□□□□ -1.29
SF3B1-208ENST00000470268 NBPF26B4DH59 902 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 HDGFP51858 240 aaKnown RBP7.01□□□□□ -1.29
SF3B1-208ENST00000470268 TSR1Q2NL82 804 aaKnown RBP7.01□□□□□ -1.29
SF3B1-208ENST00000470268 IL21Q9HBE4 155 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 ERBINQ96RT1 1412 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 ARHGEF40Q8TER5 1519 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 ATP10AO60312 1499 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 SIGLEC1Q9BZZ2 1709 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 KIF3BO15066 747 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 NEUROD2Q15784 382 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 TJAP1Q5JTD0 557 aa7.01□□□□□ -1.29
SF3B1-208ENST00000470268 FCHSD2O94868 740 aa7□□□□□ -1.29
SF3B1-208ENST00000470268 HRCP23327 699 aa7□□□□□ -1.29
SF3B1-208ENST00000470268 MINK1Q8N4C8 1332 aaPredicted RBP7□□□□□ -1.29
SF3B1-208ENST00000470268 HIC1Q14526 733 aa7□□□□□ -1.29
SF3B1-208ENST00000470268 SAMD7Q7Z3H4 446 aa7□□□□□ -1.29
SF3B1-208ENST00000470268 RBM27Q9P2N5 1060 aaKnown RBP7□□□□□ -1.29
SF3B1-208ENST00000470268 GNPATO15228 680 aa6.99□□□□□ -1.29
SF3B1-208ENST00000470268 GFRA3O60609 400 aa6.99□□□□□ -1.29
SF3B1-208ENST00000470268 PRIM1P49642 420 aaKnown RBP6.99□□□□□ -1.29
SF3B1-208ENST00000470268 TATDN2Q93075 761 aa6.99□□□□□ -1.29
SF3B1-208ENST00000470268 V9GY48 417 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-208ENST00000470268 REREQ9P2R6 1566 aa6.99□□□□□ -1.29
SF3B1-208ENST00000470268 DHX57Q6P158 1386 aaKnown RBP6.98□□□□□ -1.29
SF3B1-208ENST00000470268 MAP2K5Q13163 448 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 GGT6Q6P531 493 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 TRIM52Q96A61 297 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 PNMA3Q9UL41 463 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 MROH1Q8NDA8 1641 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 PZPP20742 1482 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 NUP155O75694 1391 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 PTGDRQ13258 359 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 TRAF7Q6Q0C0 670 aa6.98□□□□□ -1.29
SF3B1-208ENST00000470268 EIF2AK4Q9P2K8 1649 aaKnown RBP6.97□□□□□ -1.29
SF3B1-208ENST00000470268 NRG2O14511 850 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-208ENST00000470268 TRIM66O15016 1216 aa6.97□□□□□ -1.29
SF3B1-208ENST00000470268 MTRQ99707 1265 aa6.97□□□□□ -1.29
SF3B1-208ENST00000470268 AGLP35573 1532 aa6.97□□□□□ -1.29
SF3B1-208ENST00000470268 MPHOSPH9Q99550 1183 aa6.96□□□□□ -1.29
SF3B1-208ENST00000470268 PRKD2Q9BZL6 878 aa6.96□□□□□ -1.29
SF3B1-208ENST00000470268 UNC13BO14795 1591 aa6.96□□□□□ -1.29
SF3B1-208ENST00000470268 DEPDC5O75140 1603 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 PRDM15P57071 1507 aaPredicted RBP6.96□□□□□ -1.3
SF3B1-208ENST00000470268 KDM5DQ9BY66 1539 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 SMAPO00193 183 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 IRF6O14896 467 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 MLECQ14165 292 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms