RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 UNC5CLQ8IV45 518 aa8.22□□□□□ -1.09
PTPN4-209ENST00000469511 NUP155O75694 1391 aa8.22□□□□□ -1.09
PTPN4-209ENST00000469511 PLCH1Q4KWH8 1693 aa8.21□□□□□ -1.09
PTPN4-209ENST00000469511 CABLES1Q8TDN4 633 aa8.21□□□□□ -1.1
PTPN4-209ENST00000469511 KIF1BO60333 1816 aa8.21□□□□□ -1.1
PTPN4-209ENST00000469511 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
PTPN4-209ENST00000469511 USP32Q8NFA0 1604 aa8.19□□□□□ -1.1
PTPN4-209ENST00000469511 R3HDM1Q15032 1099 aaKnown RBP8.19□□□□□ -1.1
PTPN4-209ENST00000469511 PIP4P2Q8N4L2 257 aa8.19□□□□□ -1.1
PTPN4-209ENST00000469511 ABCA3Q99758 1704 aa8.18□□□□□ -1.1
PTPN4-209ENST00000469511 VGFO15240 615 aaPredicted RBP8.18□□□□□ -1.1
PTPN4-209ENST00000469511 ONECUT3O60422 494 aaPredicted RBP8.18□□□□□ -1.1
PTPN4-209ENST00000469511 SF3B2Q13435 895 aaKnown RBP8.18□□□□□ -1.1
PTPN4-209ENST00000469511 KRT27Q7Z3Y8 459 aa8.18□□□□□ -1.1
PTPN4-209ENST00000469511 WAPLQ7Z5K2 1190 aa8.18□□□□□ -1.1
PTPN4-209ENST00000469511 NPHP3Q7Z494 1330 aa8.18□□□□□ -1.1
PTPN4-209ENST00000469511 TNS1Q9HBL0 1735 aaKnown RBP8.17□□□□□ -1.1
PTPN4-209ENST00000469511 PYGBP11216 843 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 ITGAEP38570 1179 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 HAP1P54257 671 aaPredicted RBP8.17□□□□□ -1.1
PTPN4-209ENST00000469511 VPS72Q15906 364 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 SGIP1Q9BQI5 828 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 CCDC9Q9Y3X0 531 aaKnown RBP8.17□□□□□ -1.1
PTPN4-209ENST00000469511 SPATA31A3Q5VYP0 1347 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 PLEKHH1Q9ULM0 1364 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 NRAPQ86VF7 1730 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 NWD2Q9ULI1 1742 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 PPLO60437 1756 aa8.17□□□□□ -1.1
PTPN4-209ENST00000469511 RGPD1P0DJD0 1748 aa8.16□□□□□ -1.1
PTPN4-209ENST00000469511 YY1P25490 414 aa8.16□□□□□ -1.1
PTPN4-209ENST00000469511 NAIPQ13075 1403 aa8.16□□□□□ -1.1
PTPN4-209ENST00000469511 EZH2Q15910 746 aaKnown RBP8.16□□□□□ -1.1
PTPN4-209ENST00000469511 CDC42BPGQ6DT37 1551 aa8.16□□□□□ -1.1
PTPN4-209ENST00000469511 PAXIP1Q6ZW49 1069 aaPredicted RBP8.16□□□□□ -1.1
PTPN4-209ENST00000469511 FMN2Q9NZ56 1722 aa8.16□□□□□ -1.1
PTPN4-209ENST00000469511 CAMTA1Q9Y6Y1 1673 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 FAM83GA6ND36 823 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 BAG6P46379 1132 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 FAM98CQ17RN3 349 aaKnown RBP8.15□□□□□ -1.1
PTPN4-209ENST00000469511 KRT28Q7Z3Y7 464 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 SPRYD3Q8NCJ5 442 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 TSPYL2Q9H2G4 693 aaPredicted RBP8.15□□□□□ -1.1
PTPN4-209ENST00000469511 STK26Q9P289 416 aa8.15□□□□□ -1.1
PTPN4-209ENST00000469511 HFM1A2PYH4 1435 aa8.14□□□□□ -1.11
PTPN4-209ENST00000469511 PRAG1Q86YV5 1406 aa8.14□□□□□ -1.11
PTPN4-209ENST00000469511 A0A0G2JS52 829 aa8.14□□□□□ -1.11
PTPN4-209ENST00000469511 MYT1Q01538 1121 aa8.14□□□□□ -1.11
PTPN4-209ENST00000469511 CCDC61Q9Y6R9 512 aa8.14□□□□□ -1.11
PTPN4-209ENST00000469511 ROCK1Q13464 1354 aa8.13□□□□□ -1.11
PTPN4-209ENST00000469511 TMEM132EQ6IEE7 984 aa8.13□□□□□ -1.11
PTPN4-209ENST00000469511 CFAP44Q96MT7 982 aa8.13□□□□□ -1.11
PTPN4-209ENST00000469511 IFT172Q9UG01 1749 aa8.12□□□□□ -1.11
PTPN4-209ENST00000469511 ADGRF5Q8IZF2 1346 aa8.12□□□□□ -1.11
PTPN4-209ENST00000469511 VSIG10Q8N0Z9 540 aa8.12□□□□□ -1.11
PTPN4-209ENST00000469511 CAMKK2Q96RR4 588 aa8.12□□□□□ -1.11
PTPN4-209ENST00000469511 NUP188Q5SRE5 1749 aa8.12□□□□□ -1.11
PTPN4-209ENST00000469511 STK25O00506 426 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 LMOD2Q6P5Q4 547 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 ZNF467Q7Z7K2 595 aaPredicted RBP8.11□□□□□ -1.11
PTPN4-209ENST00000469511 PPARGC1BQ86YN6 1023 aaKnown RBP8.11□□□□□ -1.11
PTPN4-209ENST00000469511 KIF1AQ12756 1690 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 RREB1Q92766 1687 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 THSD7AQ9UPZ6 1657 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 TNS3Q68CZ2 1445 aa8.11□□□□□ -1.11
PTPN4-209ENST00000469511 PAK3O75914 559 aaPredicted RBP8.1□□□□□ -1.11
PTPN4-209ENST00000469511 TRIM37O94972 964 aa8.1□□□□□ -1.11
PTPN4-209ENST00000469511 BTG4Q9NY30 223 aa8.1□□□□□ -1.11
PTPN4-209ENST00000469511 LRPPRCP42704 1394 aaKnown RBP8.1□□□□□ -1.11
PTPN4-209ENST00000469511 TRPM3Q9HCF6 1732 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-209ENST00000469511 CRYBG1Q9Y4K1 1723 aa8.09□□□□□ -1.11
PTPN4-209ENST00000469511 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-209ENST00000469511 ZFP91Q96JP5 570 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-209ENST00000469511 PHF8Q9UPP1 1060 aa8.09□□□□□ -1.11
PTPN4-209ENST00000469511 DISP2A7MBM2 1401 aa8.09□□□□□ -1.11
PTPN4-209ENST00000469511 KNDC1Q76NI1 1749 aa8.09□□□□□ -1.11
PTPN4-209ENST00000469511 NKX1-1Q15270 411 aaPredicted RBP8.08□□□□□ -1.12
PTPN4-209ENST00000469511 PMFBP1Q8TBY8 1022 aa8.08□□□□□ -1.12
PTPN4-209ENST00000469511 CCDC144AA2RUR9 1427 aa8.08□□□□□ -1.12
PTPN4-209ENST00000469511 ALS2Q96Q42 1657 aa8.08□□□□□ -1.12
PTPN4-209ENST00000469511 COL14A1Q05707 1796 aaKnown RBP8.07□□□□□ -1.12
PTPN4-209ENST00000469511 SPATA31A5Q5VU36 1347 aa8.07□□□□□ -1.12
PTPN4-209ENST00000469511 SPATA31A7Q8IWB4 1347 aa8.07□□□□□ -1.12
PTPN4-209ENST00000469511 TECPR2O15040 1411 aa8.07□□□□□ -1.12
PTPN4-209ENST00000469511 APBA3O96018 575 aa8.07□□□□□ -1.12
PTPN4-209ENST00000469511 SAFB2Q14151 953 aaKnown RBP eCLIP8.07□□□□□ -1.12
PTPN4-209ENST00000469511 BCL11BQ9C0K0 894 aaPredicted RBP8.07□□□□□ -1.12
PTPN4-209ENST00000469511 NRXN1Q9ULB1 1477 aa8.06□□□□□ -1.12
PTPN4-209ENST00000469511 RGL3Q3MIN7 710 aa8.06□□□□□ -1.12
PTPN4-209ENST00000469511 ZNF579Q8NAF0 562 aaKnown RBP8.06□□□□□ -1.12
PTPN4-209ENST00000469511 PDGFDQ9GZP0 370 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-209ENST00000469511 SBNO1A3KN83 1393 aa8.06□□□□□ -1.12
PTPN4-209ENST00000469511 ABCC11Q96J66 1382 aa8.06□□□□□ -1.12
PTPN4-209ENST00000469511 RPGRIP1LQ68CZ1 1315 aa8.05□□□□□ -1.12
PTPN4-209ENST00000469511 PSME1Q06323 249 aa8.05□□□□□ -1.12
PTPN4-209ENST00000469511 PDAP1Q13442 181 aaKnown RBP8.05□□□□□ -1.12
PTPN4-209ENST00000469511 ZNF784Q8NCA9 323 aaPredicted RBP8.05□□□□□ -1.12
PTPN4-209ENST00000469511 STK24Q9Y6E0 443 aa8.05□□□□□ -1.12
PTPN4-209ENST00000469511 YTHDC2Q9H6S0 1430 aaKnown RBP8.04□□□□□ -1.12
PTPN4-209ENST00000469511 GTPBP6O43824 516 aaPredicted RBP8.04□□□□□ -1.12
PTPN4-209ENST00000469511 CHRNA2Q15822 529 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms