RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 IQSEC2Q5JU85 1478 aa10.02□□□□□ -0.81
COL6A3-208ENST00000468792 KIF20BQ96Q89 1820 aa10.02□□□□□ -0.81
COL6A3-208ENST00000468792 ROBO2Q9HCK4 1378 aa10.01□□□□□ -0.81
COL6A3-208ENST00000468792 PPIP5K1Q6PFW1 1433 aa10.01□□□□□ -0.81
COL6A3-208ENST00000468792 PLEKHG3A1L390 1219 aa10.01□□□□□ -0.81
COL6A3-208ENST00000468792 NUDT16Q96DE0 195 aaKnown RBP10.01□□□□□ -0.81
COL6A3-208ENST00000468792 NKTRP30414 1462 aaKnown RBP10□□□□□ -0.81
COL6A3-208ENST00000468792 MON2Q7Z3U7 1717 aa10□□□□□ -0.81
COL6A3-208ENST00000468792 CEBPAP49715 358 aaPredicted RBP10□□□□□ -0.81
COL6A3-208ENST00000468792 TSHZ2Q9NRE2 1034 aa10□□□□□ -0.81
COL6A3-208ENST00000468792 SETD1BQ9UPS6 1966 aaKnown RBP10□□□□□ -0.81
COL6A3-208ENST00000468792 ADAMTSL3P82987 1691 aa9.99□□□□□ -0.81
COL6A3-208ENST00000468792 AKAP12Q02952 1782 aa9.99□□□□□ -0.81
COL6A3-208ENST00000468792 IRX6P78412 446 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-208ENST00000468792 WWC1Q8IX03 1113 aa9.99□□□□□ -0.81
COL6A3-208ENST00000468792 CEP170BQ9Y4F5 1589 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-208ENST00000468792 ZNF142P52746 1687 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-208ENST00000468792 TOPAZ1Q8N9V7 1692 aa9.99□□□□□ -0.81
COL6A3-208ENST00000468792 PTPRUQ92729 1446 aa9.99□□□□□ -0.81
COL6A3-208ENST00000468792 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-208ENST00000468792 GGNBP2Q9H3C7 697 aa9.98□□□□□ -0.81
COL6A3-208ENST00000468792 DNAJC5Q9H3Z4 198 aa9.98□□□□□ -0.81
COL6A3-208ENST00000468792 SALL2Q9Y467 1007 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-208ENST00000468792 XRN1Q8IZH2 1706 aaKnown RBP9.98□□□□□ -0.81
COL6A3-208ENST00000468792 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-208ENST00000468792 CT47B1P0C2W7 299 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-208ENST00000468792 CCDC146Q8IYE0 955 aa9.97□□□□□ -0.81
COL6A3-208ENST00000468792 TCP11L2Q8N4U5 519 aa9.97□□□□□ -0.81
COL6A3-208ENST00000468792 PLEKHF1Q96S99 279 aa9.97□□□□□ -0.81
COL6A3-208ENST00000468792 DIAPH1O60610 1272 aaKnown RBP9.96□□□□□ -0.82
COL6A3-208ENST00000468792 FCHSD2O94868 740 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 TNNT2P45379 298 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-208ENST00000468792 AMOTL2Q9Y2J4 779 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 IL16Q14005 1332 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 PRR36Q9H6K5 1346 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 SSH2Q76I76 1423 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 ANKARQ7Z5J8 1434 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 CDK12Q9NYV4 1490 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-208ENST00000468792 ITSN1Q15811 1721 aa9.96□□□□□ -0.82
COL6A3-208ENST00000468792 U2AF1L5P0DN76 240 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-208ENST00000468792 U2AF1Q01081 240 aaKnown RBP eCLIP9.95□□□□□ -0.82
COL6A3-208ENST00000468792 CCDC136Q96JN2 1154 aa9.95□□□□□ -0.82
COL6A3-208ENST00000468792 POLKQ9UBT6 870 aa9.95□□□□□ -0.82
COL6A3-208ENST00000468792 RIMS1Q86UR5 1692 aaKnown RBP9.95□□□□□ -0.82
COL6A3-208ENST00000468792 NRKQ7Z2Y5 1582 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 TTC21AQ8NDW8 1320 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 AAMPQ13685 434 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 B4GALNT3Q6L9W6 998 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 ANKLE2Q86XL3 938 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 POTEDQ86YR6 584 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 COG3Q96JB2 828 aa9.94□□□□□ -0.82
COL6A3-208ENST00000468792 LRRC7Q96NW7 1537 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 USP6P35125 1406 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 USP31Q70CQ4 1352 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 PDE3AQ14432 1141 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 SLC26A8Q96RN1 970 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 MYH16Q9H6N6 1097 aa9.93□□□□□ -0.82
COL6A3-208ENST00000468792 SPINK5Q9NQ38 1064 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-208ENST00000468792 OVOS2A0A0J9YW53 1432 aa9.92□□□□□ -0.82
COL6A3-208ENST00000468792 OVOS2Q6IE36 1432 aa9.92□□□□□ -0.82
COL6A3-208ENST00000468792 TTC21BQ7Z4L5 1316 aa9.92□□□□□ -0.82
COL6A3-208ENST00000468792 SENP3-EIF4A1A0A087X0R7 540 aa9.92□□□□□ -0.82
COL6A3-208ENST00000468792 MAP2P11137 1827 aaKnown RBP9.91□□□□□ -0.82
COL6A3-208ENST00000468792 ACEP12821 1306 aa9.91□□□□□ -0.82
COL6A3-208ENST00000468792 IL13P35225 146 aa9.91□□□□□ -0.82
COL6A3-208ENST00000468792 TMPOP42166 694 aaKnown RBP9.91□□□□□ -0.82
COL6A3-208ENST00000468792 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.91□□□□□ -0.82
COL6A3-208ENST00000468792 EXOC6Q8TAG9 804 aa9.91□□□□□ -0.82
COL6A3-208ENST00000468792 CHD2O14647 1828 aaKnown RBP9.91□□□□□ -0.82
COL6A3-208ENST00000468792 NALCNQ8IZF0 1738 aa9.9□□□□□ -0.82
COL6A3-208ENST00000468792 KIF24Q5T7B8 1368 aa9.9□□□□□ -0.82
COL6A3-208ENST00000468792 MAPK8IP3Q9UPT6 1336 aa9.9□□□□□ -0.82
COL6A3-208ENST00000468792 NME9Q86XW9 330 aa9.9□□□□□ -0.82
COL6A3-208ENST00000468792 RSPH6AQ9H0K4 717 aa9.9□□□□□ -0.82
COL6A3-208ENST00000468792 USP54Q70EL1 1684 aa9.9□□□□□ -0.83
COL6A3-208ENST00000468792 U2SURPO15042 1029 aaKnown RBP9.89□□□□□ -0.83
COL6A3-208ENST00000468792 CALD1Q05682 793 aaKnown RBP9.89□□□□□ -0.83
COL6A3-208ENST00000468792 ZNF428Q96B54 188 aa9.89□□□□□ -0.83
COL6A3-208ENST00000468792 TRIM35Q9UPQ4 493 aa9.89□□□□□ -0.83
COL6A3-208ENST00000468792 FMN2Q9NZ56 1722 aa9.88□□□□□ -0.83
COL6A3-208ENST00000468792 NEFMP07197 916 aa9.88□□□□□ -0.83
COL6A3-208ENST00000468792 RBM19Q9Y4C8 960 aaKnown RBP9.88□□□□□ -0.83
COL6A3-208ENST00000468792 KCNA6P17658 529 aa9.87□□□□□ -0.83
COL6A3-208ENST00000468792 RARSP54136 660 aaKnown RBP9.87□□□□□ -0.83
COL6A3-208ENST00000468792 SAMD1Q6SPF0 538 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-208ENST00000468792 CRBNQ96SW2 442 aa9.87□□□□□ -0.83
COL6A3-208ENST00000468792 NCKAP5LQ9HCH0 1330 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 TCERG1O14776 1098 aaKnown RBP9.86□□□□□ -0.83
COL6A3-208ENST00000468792 PLIN1O60240 522 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 MS4A1P11836 297 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 BRPF1P55201 1214 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-208ENST00000468792 RIPK4P57078 832 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 LMOD3Q0VAK6 560 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 NFE2L2Q16236 605 aa9.86□□□□□ -0.83
COL6A3-208ENST00000468792 NWD1Q149M9 1564 aa9.85□□□□□ -0.83
COL6A3-208ENST00000468792 NPHP4O75161 1426 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-208ENST00000468792 CENPQQ7L2Z9 268 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-208ENST00000468792 RRP7AQ9Y3A4 280 aaKnown RBP9.85□□□□□ -0.83
COL6A3-208ENST00000468792 EMILIN1Q9Y6C2 1016 aa9.85□□□□□ -0.83
COL6A3-208ENST00000468792 KDM2BQ8NHM5 1336 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms