RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 USP6P35125 1406 aa16.31■□□□□ 0.2
CUX1-207ENST00000465461 ARHGEF10O15013 1369 aa16.31■□□□□ 0.2
CUX1-207ENST00000465461 HAP1P54257 671 aaPredicted RBP16.31■□□□□ 0.2
CUX1-207ENST00000465461 ABTB2Q8N961 1025 aa16.31■□□□□ 0.2
CUX1-207ENST00000465461 POLR3GLQ9BT43 218 aa16.31■□□□□ 0.2
CUX1-207ENST00000465461 CD163L1Q9NR16 1453 aa16.3■□□□□ 0.2
CUX1-207ENST00000465461 PUS7Q96PZ0 661 aaKnown RBP16.3■□□□□ 0.2
CUX1-207ENST00000465461 CPSF1Q10570 1443 aaKnown RBP16.29■□□□□ 0.2
CUX1-207ENST00000465461 KTN1Q86UP2 1357 aaKnown RBP16.29■□□□□ 0.2
CUX1-207ENST00000465461 AKAP12Q02952 1782 aa16.29■□□□□ 0.2
CUX1-207ENST00000465461 C11orf95C9JLR9 678 aaPredicted RBP16.29■□□□□ 0.2
CUX1-207ENST00000465461 SLC24A1O60721 1099 aa16.29■□□□□ 0.2
CUX1-207ENST00000465461 ILDR2Q71H61 639 aa16.29■□□□□ 0.2
CUX1-207ENST00000465461 NGLY1Q96IV0 654 aa16.29■□□□□ 0.2
CUX1-207ENST00000465461 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
CUX1-207ENST00000465461 AFF2P51816 1311 aa16.28■□□□□ 0.2
CUX1-207ENST00000465461 POTEAQ6S8J7 498 aa16.28■□□□□ 0.2
CUX1-207ENST00000465461 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.28■□□□□ 0.2
CUX1-207ENST00000465461 SSH2Q76I76 1423 aa16.28■□□□□ 0.2
CUX1-207ENST00000465461 TTC21BQ7Z4L5 1316 aa16.27■□□□□ 0.2
CUX1-207ENST00000465461 HDGFL2Q7Z4V5 671 aaPredicted RBP16.27■□□□□ 0.2
CUX1-207ENST00000465461 ZRANB1Q9UGI0 708 aa16.27■□□□□ 0.2
CUX1-207ENST00000465461 ABCA3Q99758 1704 aa16.27■□□□□ 0.19
CUX1-207ENST00000465461 A0A1W2PP64 1363 aa16.26■□□□□ 0.19
CUX1-207ENST00000465461 NLRP6P59044 892 aa16.25■□□□□ 0.19
CUX1-207ENST00000465461 CDCA8Q53HL2 280 aa16.25■□□□□ 0.19
CUX1-207ENST00000465461 TERF2IPQ9NYB0 399 aa16.25■□□□□ 0.19
CUX1-207ENST00000465461 MON2Q7Z3U7 1717 aa16.25■□□□□ 0.19
CUX1-207ENST00000465461 FAM83GA6ND36 823 aa16.24■□□□□ 0.19
CUX1-207ENST00000465461 ZC3H6P61129 1189 aaKnown RBP16.24■□□□□ 0.19
CUX1-207ENST00000465461 NME9Q86XW9 330 aa16.24■□□□□ 0.19
CUX1-207ENST00000465461 MARF1Q9Y4F3 1742 aaKnown RBP16.24■□□□□ 0.19
CUX1-207ENST00000465461 CRYBG1Q9Y4K1 1723 aa16.24■□□□□ 0.19
CUX1-207ENST00000465461 NRKQ7Z2Y5 1582 aa16.23■□□□□ 0.19
CUX1-207ENST00000465461 NLRP13Q86W25 1043 aa16.23■□□□□ 0.19
CUX1-207ENST00000465461 USP21Q9UK80 565 aa16.23■□□□□ 0.19
CUX1-207ENST00000465461 PIK3C2AO00443 1686 aa16.23■□□□□ 0.19
CUX1-207ENST00000465461 SOX12O15370 315 aa16.22■□□□□ 0.19
CUX1-207ENST00000465461 ZNF772Q68DY9 489 aaPredicted RBP16.22■□□□□ 0.19
CUX1-207ENST00000465461 BRD4O60885 1362 aaPredicted RBP16.22■□□□□ 0.19
CUX1-207ENST00000465461 PHRF1Q9P1Y6 1649 aaKnown RBP16.22■□□□□ 0.19
CUX1-207ENST00000465461 MYOM1P52179 1685 aa16.21■□□□□ 0.19
CUX1-207ENST00000465461 CHRNA2Q15822 529 aa16.21■□□□□ 0.19
CUX1-207ENST00000465461 FNBP4Q8N3X1 1017 aaPredicted RBP16.21■□□□□ 0.19
CUX1-207ENST00000465461 ANKRD36BQ8N2N9 1353 aa16.21■□□□□ 0.19
CUX1-207ENST00000465461 NINLQ9Y2I6 1382 aa16.21■□□□□ 0.19
CUX1-207ENST00000465461 USP19O94966 1318 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 TTC21AQ8NDW8 1320 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 ZBTB7CA1YPR0 619 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 GCP02774 474 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 CARD14Q9BXL6 1004 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 QTRT2Q9H974 415 aaKnown RBP16.2■□□□□ 0.18
CUX1-207ENST00000465461 KIAA0232Q92628 1395 aa16.2■□□□□ 0.18
CUX1-207ENST00000465461 EDC4Q6P2E9 1401 aaKnown RBP16.19■□□□□ 0.18
CUX1-207ENST00000465461 BCL9LQ86UU0 1499 aa16.18■□□□□ 0.18
CUX1-207ENST00000465461 PRDM11Q9NQV5 511 aa16.18■□□□□ 0.18
CUX1-207ENST00000465461 KIF7Q2M1P5 1343 aa16.18■□□□□ 0.18
CUX1-207ENST00000465461 BTG4Q9NY30 223 aa16.17■□□□□ 0.18
CUX1-207ENST00000465461 SLIT2O94813 1529 aa16.17■□□□□ 0.18
CUX1-207ENST00000465461 PLCH1Q4KWH8 1693 aa16.16■□□□□ 0.18
CUX1-207ENST00000465461 UNC5CLQ8IV45 518 aa16.16■□□□□ 0.18
CUX1-207ENST00000465461 SLIT3O75094 1523 aa16.15■□□□□ 0.18
CUX1-207ENST00000465461 RXRBP28702 533 aa16.15■□□□□ 0.18
CUX1-207ENST00000465461 GGNBP2Q9H3C7 697 aa16.15■□□□□ 0.18
CUX1-207ENST00000465461 PANK3Q9H999 370 aa16.15■□□□□ 0.18
CUX1-207ENST00000465461 USP31Q70CQ4 1352 aa16.14■□□□□ 0.17
CUX1-207ENST00000465461 NSD3Q9BZ95 1437 aa16.14■□□□□ 0.17
CUX1-207ENST00000465461 FYB1O15117 783 aa16.14■□□□□ 0.17
CUX1-207ENST00000465461 FBLN1P23142 703 aa16.14■□□□□ 0.17
CUX1-207ENST00000465461 TRPC5Q9UL62 973 aaPredicted RBP16.14■□□□□ 0.17
CUX1-207ENST00000465461 COL14A1Q05707 1796 aaKnown RBP16.13■□□□□ 0.17
CUX1-207ENST00000465461 ATRNO75882 1429 aa16.13■□□□□ 0.17
CUX1-207ENST00000465461 STRN4Q9NRL3 753 aa16.13■□□□□ 0.17
CUX1-207ENST00000465461 CCDC9Q9Y3X0 531 aaKnown RBP16.12■□□□□ 0.17
CUX1-207ENST00000465461 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
CUX1-207ENST00000465461 RBM6P78332 1123 aaKnown RBP16.11■□□□□ 0.17
CUX1-207ENST00000465461 KCNH5Q8NCM2 988 aa16.11■□□□□ 0.17
CUX1-207ENST00000465461 COG3Q96JB2 828 aa16.11■□□□□ 0.17
CUX1-207ENST00000465461 CPDO75976 1380 aa16.11■□□□□ 0.17
CUX1-207ENST00000465461 OVOS2A0A0J9YW53 1432 aa16.11■□□□□ 0.17
CUX1-207ENST00000465461 OVOS2Q6IE36 1432 aa16.11■□□□□ 0.17
CUX1-207ENST00000465461 ARHGEF25Q86VW2 580 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 GJD4Q96KN9 370 aaPredicted RBP16.1■□□□□ 0.17
CUX1-207ENST00000465461 AXIN2Q9Y2T1 843 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 CAMTA1Q9Y6Y1 1673 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 NRAPQ86VF7 1730 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 NWD2Q9ULI1 1742 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 CCDC7Q96M83 1385 aa16.1■□□□□ 0.17
CUX1-207ENST00000465461 NFAT5O94916 1531 aa16.09■□□□□ 0.17
CUX1-207ENST00000465461 EVA1CP58658 441 aa16.09■□□□□ 0.17
CUX1-207ENST00000465461 VPS72Q15906 364 aa16.09■□□□□ 0.17
CUX1-207ENST00000465461 USP54Q70EL1 1684 aa16.08■□□□□ 0.17
CUX1-207ENST00000465461 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.08■□□□□ 0.17
CUX1-207ENST00000465461 LMO7Q8WWI1 1683 aa16.08■□□□□ 0.16
CUX1-207ENST00000465461 KIF20BQ96Q89 1820 aa16.08■□□□□ 0.16
CUX1-207ENST00000465461 LARP1Q6PKG0 1096 aaKnown RBP16.07■□□□□ 0.16
CUX1-207ENST00000465461 GLI3P10071 1580 aa16.07■□□□□ 0.16
CUX1-207ENST00000465461 COL18A1P39060 1754 aa16.06■□□□□ 0.16
CUX1-207ENST00000465461 RGS12O14924 1447 aa16.06■□□□□ 0.16
CUX1-207ENST00000465461 AATKQ6ZMQ8 1374 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms