RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 ADAMTS2O95450 1211 aa20.26■□□□□ 0.83
SQSTM1-205ENST00000464493 USP6P35125 1406 aa20.26■□□□□ 0.83
SQSTM1-205ENST00000464493 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
SQSTM1-205ENST00000464493 CABLES1Q8TDN4 633 aa20.25■□□□□ 0.83
SQSTM1-205ENST00000464493 CPSF1Q10570 1443 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-205ENST00000464493 NINLQ9Y2I6 1382 aa20.24■□□□□ 0.83
SQSTM1-205ENST00000464493 AKAP12Q02952 1782 aa20.24■□□□□ 0.83
SQSTM1-205ENST00000464493 HDGFL2Q7Z4V5 671 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-205ENST00000464493 ABTB2Q8N961 1025 aa20.24■□□□□ 0.83
SQSTM1-205ENST00000464493 KTN1Q86UP2 1357 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-205ENST00000464493 HAP1P54257 671 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-205ENST00000464493 TERF2IPQ9NYB0 399 aa20.23■□□□□ 0.83
SQSTM1-205ENST00000464493 SSH2Q76I76 1423 aa20.22■□□□□ 0.83
SQSTM1-205ENST00000464493 NUTM2GQ5VZR2 741 aa20.22■□□□□ 0.83
SQSTM1-205ENST00000464493 C8orf37Q96NL8 207 aa20.21■□□□□ 0.83
SQSTM1-205ENST00000464493 CD163L1Q9NR16 1453 aa20.21■□□□□ 0.83
SQSTM1-205ENST00000464493 TTC21BQ7Z4L5 1316 aa20.21■□□□□ 0.83
SQSTM1-205ENST00000464493 NGLY1Q96IV0 654 aa20.2■□□□□ 0.82
SQSTM1-205ENST00000464493 RGS17Q9UGC6 210 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-205ENST00000464493 A0A1W2PP64 1363 aa20.19■□□□□ 0.82
SQSTM1-205ENST00000464493 NLRP13Q86W25 1043 aa20.18■□□□□ 0.82
SQSTM1-205ENST00000464493 POLR3GLQ9BT43 218 aa20.18■□□□□ 0.82
SQSTM1-205ENST00000464493 TTC21AQ8NDW8 1320 aa20.18■□□□□ 0.82
SQSTM1-205ENST00000464493 MON2Q7Z3U7 1717 aa20.18■□□□□ 0.82
SQSTM1-205ENST00000464493 ABCA3Q99758 1704 aa20.16■□□□□ 0.82
SQSTM1-205ENST00000464493 MARF1Q9Y4F3 1742 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-205ENST00000464493 NLRP6P59044 892 aa20.16■□□□□ 0.82
SQSTM1-205ENST00000464493 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.16■□□□□ 0.82
SQSTM1-205ENST00000464493 AFF2P51816 1311 aa20.16■□□□□ 0.82
SQSTM1-205ENST00000464493 C11orf95C9JLR9 678 aaPredicted RBP20.15■□□□□ 0.82
SQSTM1-205ENST00000464493 ZNF772Q68DY9 489 aaPredicted RBP20.15■□□□□ 0.82
SQSTM1-205ENST00000464493 ANKRD36BQ8N2N9 1353 aa20.15■□□□□ 0.82
SQSTM1-205ENST00000464493 CRYBG1Q9Y4K1 1723 aa20.14■□□□□ 0.81
SQSTM1-205ENST00000464493 NRKQ7Z2Y5 1582 aa20.14■□□□□ 0.81
SQSTM1-205ENST00000464493 EDC4Q6P2E9 1401 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-205ENST00000464493 FNBP4Q8N3X1 1017 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-205ENST00000464493 PIK3C2AO00443 1686 aa20.13■□□□□ 0.81
SQSTM1-205ENST00000464493 USP19O94966 1318 aa20.12■□□□□ 0.81
SQSTM1-205ENST00000464493 MYOM1P52179 1685 aa20.11■□□□□ 0.81
SQSTM1-205ENST00000464493 FAM83GA6ND36 823 aa20.11■□□□□ 0.81
SQSTM1-205ENST00000464493 GCP02774 474 aa20.11■□□□□ 0.81
SQSTM1-205ENST00000464493 POTEAQ6S8J7 498 aa20.11■□□□□ 0.81
SQSTM1-205ENST00000464493 USP21Q9UK80 565 aa20.11■□□□□ 0.81
SQSTM1-205ENST00000464493 PHRF1Q9P1Y6 1649 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-205ENST00000464493 ZEB1P37275 1124 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-205ENST00000464493 ZC3H6P61129 1189 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-205ENST00000464493 NME9Q86XW9 330 aa20.1■□□□□ 0.81
SQSTM1-205ENST00000464493 ZRANB1Q9UGI0 708 aa20.09■□□□□ 0.81
SQSTM1-205ENST00000464493 QTRT2Q9H974 415 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-205ENST00000464493 PRDM11Q9NQV5 511 aa20.08■□□□□ 0.81
SQSTM1-205ENST00000464493 USP31Q70CQ4 1352 aa20.08■□□□□ 0.8
SQSTM1-205ENST00000464493 KIAA0232Q92628 1395 aa20.08■□□□□ 0.8
SQSTM1-205ENST00000464493 KIF7Q2M1P5 1343 aa20.07■□□□□ 0.8
SQSTM1-205ENST00000464493 KCNH5Q8NCM2 988 aa20.07■□□□□ 0.8
SQSTM1-205ENST00000464493 CARD14Q9BXL6 1004 aa20.07■□□□□ 0.8
SQSTM1-205ENST00000464493 SLIT2O94813 1529 aa20.07■□□□□ 0.8
SQSTM1-205ENST00000464493 BCL9LQ86UU0 1499 aa20.06■□□□□ 0.8
SQSTM1-205ENST00000464493 SLIT3O75094 1523 aa20.06■□□□□ 0.8
SQSTM1-205ENST00000464493 ILDR2Q71H61 639 aa20.05■□□□□ 0.8
SQSTM1-205ENST00000464493 UNC5CLQ8IV45 518 aa20.05■□□□□ 0.8
SQSTM1-205ENST00000464493 TRPC5Q9UL62 973 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-205ENST00000464493 COL14A1Q05707 1796 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-205ENST00000464493 CHRNA2Q15822 529 aa20.04■□□□□ 0.8
SQSTM1-205ENST00000464493 PANK3Q9H999 370 aa20.04■□□□□ 0.8
SQSTM1-205ENST00000464493 BTG4Q9NY30 223 aa20.04■□□□□ 0.8
SQSTM1-205ENST00000464493 CPDO75976 1380 aa20.04■□□□□ 0.8
SQSTM1-205ENST00000464493 FYB1O15117 783 aa20.03■□□□□ 0.8
SQSTM1-205ENST00000464493 SOX12O15370 315 aa20.03■□□□□ 0.8
SQSTM1-205ENST00000464493 PLCH1Q4KWH8 1693 aa20.03■□□□□ 0.8
SQSTM1-205ENST00000464493 USP54Q70EL1 1684 aa20.03■□□□□ 0.8
SQSTM1-205ENST00000464493 NSD3Q9BZ95 1437 aa20.02■□□□□ 0.8
SQSTM1-205ENST00000464493 NWD2Q9ULI1 1742 aa20.02■□□□□ 0.8
SQSTM1-205ENST00000464493 RXRBP28702 533 aa20.02■□□□□ 0.8
SQSTM1-205ENST00000464493 COG3Q96JB2 828 aa20.02■□□□□ 0.8
SQSTM1-205ENST00000464493 OVOS2A0A0J9YW53 1432 aa20.01■□□□□ 0.79
SQSTM1-205ENST00000464493 OVOS2Q6IE36 1432 aa20.01■□□□□ 0.79
SQSTM1-205ENST00000464493 WASHC2AQ641Q2 1341 aa20.01■□□□□ 0.79
SQSTM1-205ENST00000464493 CCDC7Q96M83 1385 aa20■□□□□ 0.79
SQSTM1-205ENST00000464493 TNKS1BP1Q9C0C2 1729 aaKnown RBP20■□□□□ 0.79
SQSTM1-205ENST00000464493 ZBTB7CA1YPR0 619 aa20■□□□□ 0.79
SQSTM1-205ENST00000464493 RBM6P78332 1123 aaKnown RBP20■□□□□ 0.79
SQSTM1-205ENST00000464493 GGNBP2Q9H3C7 697 aa20■□□□□ 0.79
SQSTM1-205ENST00000464493 ATRNO75882 1429 aa20■□□□□ 0.79
SQSTM1-205ENST00000464493 ARHGEF25Q86VW2 580 aa19.99■□□□□ 0.79
SQSTM1-205ENST00000464493 CGNL1Q0VF96 1302 aa19.98■□□□□ 0.79
SQSTM1-205ENST00000464493 NFAT5O94916 1531 aa19.97■□□□□ 0.79
SQSTM1-205ENST00000464493 VPS72Q15906 364 aa19.97■□□□□ 0.79
SQSTM1-205ENST00000464493 GJD4Q96KN9 370 aaPredicted RBP19.97■□□□□ 0.79
SQSTM1-205ENST00000464493 KIF20BQ96Q89 1820 aa19.97■□□□□ 0.79
SQSTM1-205ENST00000464493 AATKQ6ZMQ8 1374 aa19.96■□□□□ 0.79
SQSTM1-205ENST00000464493 EVA1CP58658 441 aa19.96■□□□□ 0.79
SQSTM1-205ENST00000464493 CCDC9Q9Y3X0 531 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-205ENST00000464493 NRAPQ86VF7 1730 aa19.96■□□□□ 0.79
SQSTM1-205ENST00000464493 CAMTA1Q9Y6Y1 1673 aa19.95■□□□□ 0.78
SQSTM1-205ENST00000464493 STRN4Q9NRL3 753 aa19.95■□□□□ 0.78
SQSTM1-205ENST00000464493 LMO7Q8WWI1 1683 aa19.94■□□□□ 0.78
SQSTM1-205ENST00000464493 AXIN2Q9Y2T1 843 aa19.93■□□□□ 0.78
SQSTM1-205ENST00000464493 KNSTRNQ9Y448 316 aa19.93■□□□□ 0.78
SQSTM1-205ENST00000464493 COL18A1P39060 1754 aa19.93■□□□□ 0.78
SQSTM1-205ENST00000464493 FBLN1P23142 703 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms