RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 TNMDQ9H2S6 317 aa18.91■□□□□ 0.62
SMC4-204ENST00000462787 C9orf78Q9NZ63 289 aaPredicted RBP18.91■□□□□ 0.62
SMC4-204ENST00000462787 SSFA2P28290 1259 aa18.9■□□□□ 0.62
SMC4-204ENST00000462787 KRT85P78386 507 aa18.9■□□□□ 0.62
SMC4-204ENST00000462787 DHX29Q7Z478 1369 aaKnown RBP18.9■□□□□ 0.62
SMC4-204ENST00000462787 PDIA4P13667 645 aaKnown RBP18.9■□□□□ 0.62
SMC4-204ENST00000462787 RUFY1Q96T51 708 aa18.9■□□□□ 0.62
SMC4-204ENST00000462787 OLFM4Q6UX06 510 aa18.9■□□□□ 0.62
SMC4-204ENST00000462787 SYNE3Q6ZMZ3 975 aa18.9■□□□□ 0.62
SMC4-204ENST00000462787 MINK1Q8N4C8 1332 aaPredicted RBP18.89■□□□□ 0.61
SMC4-204ENST00000462787 FBXW7Q969H0 707 aa18.89■□□□□ 0.61
SMC4-204ENST00000462787 TWISTNBQ3B726 338 aaPredicted RBP18.89■□□□□ 0.61
SMC4-204ENST00000462787 TAF7LQ5H9L4 462 aa18.89■□□□□ 0.61
SMC4-204ENST00000462787 GGNBP2Q9H3C7 697 aa18.89■□□□□ 0.61
SMC4-204ENST00000462787 AQRO60306 1485 aaKnown RBP eCLIP18.88■□□□□ 0.614e-8■■■■■ 71.8
SMC4-204ENST00000462787 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.88■□□□□ 0.61
SMC4-204ENST00000462787 SMC2O95347 1197 aa18.88■□□□□ 0.61
SMC4-204ENST00000462787 G3BP1Q13283 466 aaKnown RBP eCLIP18.88■□□□□ 0.611e-39■■■■■ 140
SMC4-204ENST00000462787 KIF2AO00139 706 aaPredicted RBP18.88■□□□□ 0.61
SMC4-204ENST00000462787 PANK2Q9BZ23 570 aa18.87■□□□□ 0.61
SMC4-204ENST00000462787 NPHP1O15259 732 aa18.87■□□□□ 0.61
SMC4-204ENST00000462787 HMOX1P09601 288 aa18.87■□□□□ 0.61
SMC4-204ENST00000462787 UBTFL1P0CB47 393 aaPredicted RBP18.87■□□□□ 0.61
SMC4-204ENST00000462787 CGNQ9P2M7 1197 aaKnown RBP18.87■□□□□ 0.61
SMC4-204ENST00000462787 RPRD2Q5VT52 1461 aaKnown RBP18.87■□□□□ 0.61
SMC4-204ENST00000462787 CALCOCO1Q9P1Z2 691 aa18.86■□□□□ 0.61
SMC4-204ENST00000462787 TSPYL4Q9UJ04 414 aa18.86■□□□□ 0.61
SMC4-204ENST00000462787 POLA1P09884 1462 aaPredicted RBP18.86■□□□□ 0.61
SMC4-204ENST00000462787 CCDC183Q5T5S1 534 aa18.86■□□□□ 0.61
SMC4-204ENST00000462787 BAG4O95429 457 aaKnown RBP18.86■□□□□ 0.61
SMC4-204ENST00000462787 APPP05067 770 aa18.86■□□□□ 0.61
SMC4-204ENST00000462787 CALRP27797 417 aaKnown RBP18.85■□□□□ 0.61
SMC4-204ENST00000462787 HS1BP3Q53T59 392 aa18.85■□□□□ 0.61
SMC4-204ENST00000462787 NUP62CLQ9H1M0 184 aa18.85■□□□□ 0.61
SMC4-204ENST00000462787 TMEM57Q8N5G2 664 aa18.85■□□□□ 0.61
SMC4-204ENST00000462787 HIP1O00291 1037 aa18.85■□□□□ 0.61
SMC4-204ENST00000462787 ZNF396Q96N95 335 aaPredicted RBP18.85■□□□□ 0.61
SMC4-204ENST00000462787 IGHDP01880 384 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 AKAP17AQ02040 695 aaKnown RBP18.84■□□□□ 0.61
SMC4-204ENST00000462787 ZHX1Q9UKY1 873 aaPredicted RBP18.84■□□□□ 0.61
SMC4-204ENST00000462787 PTPRGP23470 1445 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 SRCIN1Q9C0H9 1055 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 C9orf84Q5VXU9 1444 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 H0YHG0 523 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 GNAI2P04899 355 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 NEXNQ0ZGT2 675 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 UVSSAQ2YD98 709 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 PDILTQ8N807 584 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 NGDNQ8NEJ9 315 aaKnown RBP18.84■□□□□ 0.61
SMC4-204ENST00000462787 TOMM22Q9NS69 142 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 CYP46A1Q9Y6A2 500 aa18.84■□□□□ 0.61
SMC4-204ENST00000462787 PRKAR2BP31323 418 aa18.83■□□□□ 0.61
SMC4-204ENST00000462787 CDR1P51861 262 aa18.83■□□□□ 0.61
SMC4-204ENST00000462787 OFD1O75665 1012 aa18.83■□□□□ 0.61
SMC4-204ENST00000462787 PPP4R3BQ5MIZ7 849 aa18.83■□□□□ 0.61
SMC4-204ENST00000462787 RPAP2Q8IXW5 612 aaPredicted RBP18.83■□□□□ 0.61
SMC4-204ENST00000462787 ZSCAN31Q96LW9 406 aaPredicted RBP18.83■□□□□ 0.61
SMC4-204ENST00000462787 PLEKHH1Q9ULM0 1364 aa18.83■□□□□ 0.61
SMC4-204ENST00000462787 ANKRD1Q15327 319 aa18.83■□□□□ 0.6
SMC4-204ENST00000462787 GPRASP1Q5JY77 1395 aa18.82■□□□□ 0.6
SMC4-204ENST00000462787 RDXP35241 583 aaKnown RBP18.82■□□□□ 0.6
SMC4-204ENST00000462787 CFAP70Q5T0N1 1121 aa18.82■□□□□ 0.6
SMC4-204ENST00000462787 PCF11O94913 1555 aaKnown RBP18.82■□□□□ 0.6
SMC4-204ENST00000462787 EIF3JO75822 258 aaKnown RBP18.82■□□□□ 0.6
SMC4-204ENST00000462787 MAP3K11Q16584 847 aa18.82■□□□□ 0.6
SMC4-204ENST00000462787 CLASRPQ8N2M8 674 aaKnown RBP18.82■□□□□ 0.6
SMC4-204ENST00000462787 PTPN23Q9H3S7 1636 aa18.82■□□□□ 0.6
SMC4-204ENST00000462787 ERICH4A6NGS2 130 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 NCAPD3P42695 1498 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 ERLIN1O75477 346 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 LRRCC1Q9C099 1032 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 HECW1Q76N89 1606 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 EIF2S2P20042 333 aaKnown RBP18.81■□□□□ 0.6
SMC4-204ENST00000462787 TEFQ10587 303 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 BMP2KLQ5H9B9 411 aa18.81■□□□□ 0.6
SMC4-204ENST00000462787 RRAGDQ9NQL2 400 aaPredicted RBP18.81■□□□□ 0.6
SMC4-204ENST00000462787 SURF6O75683 361 aaKnown RBP18.8■□□□□ 0.6
SMC4-204ENST00000462787 CCT4P50991 539 aaKnown RBP18.8■□□□□ 0.6
SMC4-204ENST00000462787 TRDNQ13061 729 aa18.8■□□□□ 0.6
SMC4-204ENST00000462787 ZSCAN23Q3MJ62 389 aa18.8■□□□□ 0.6
SMC4-204ENST00000462787 LARP1BQ659C4 914 aaKnown RBP18.8■□□□□ 0.6
SMC4-204ENST00000462787 DDX58O95786 925 aaKnown RBP18.79■□□□□ 0.6
SMC4-204ENST00000462787 PTPN14Q15678 1187 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 SNX21Q969T3 373 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 CCDC47Q96A33 483 aaKnown RBP18.79■□□□□ 0.6
SMC4-204ENST00000462787 ZKSCAN5Q9Y2L8 839 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 MLECQ14165 292 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 UBXN4Q92575 508 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 LTV1Q96GA3 475 aaPredicted RBP18.79■□□□□ 0.6
SMC4-204ENST00000462787 FOSBP53539 338 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 NECTIN2Q92692 538 aa18.79■□□□□ 0.6
SMC4-204ENST00000462787 TMCO3Q6UWJ1 677 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 PCMTD1Q96MG8 357 aaPredicted RBP18.78■□□□□ 0.6
SMC4-204ENST00000462787 CABP2Q9NPB3 220 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 ALDH1L2Q3SY69 923 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 LRSAM1Q6UWE0 723 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 USP25Q9UHP3 1055 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 SAFBQ15424 915 aaKnown RBP eCLIP18.78■□□□□ 0.62e-9■■□□□ 11.5
SMC4-204ENST00000462787 CEP57L1Q8IYX8 460 aa18.78■□□□□ 0.6
SMC4-204ENST00000462787 GTPBP4Q9BZE4 634 aaKnown RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms