RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 RXRBP28702 533 aa12.84□□□□□ -0.35
HDAC9-220ENST00000461409 ORAI2Q96SN7 254 aa12.84□□□□□ -0.35
HDAC9-220ENST00000461409 STK26Q9P289 416 aa12.84□□□□□ -0.35
HDAC9-220ENST00000461409 TRPC6Q9Y210 931 aa12.84□□□□□ -0.35
HDAC9-220ENST00000461409 PCDHB13Q9Y5F0 798 aa12.84□□□□□ -0.35
HDAC9-220ENST00000461409 IFT172Q9UG01 1749 aa12.83□□□□□ -0.36
HDAC9-220ENST00000461409 PYGBP11216 843 aa12.83□□□□□ -0.36
HDAC9-220ENST00000461409 C8orf37Q96NL8 207 aa12.83□□□□□ -0.36
HDAC9-220ENST00000461409 CDK12Q9NYV4 1490 aaPredicted RBP12.83□□□□□ -0.36
HDAC9-220ENST00000461409 NPHP3Q7Z494 1330 aa12.83□□□□□ -0.36
HDAC9-220ENST00000461409 ESCO1Q5FWF5 840 aa12.82□□□□□ -0.36
HDAC9-220ENST00000461409 RAB3GAP2Q9H2M9 1393 aa12.81□□□□□ -0.36
HDAC9-220ENST00000461409 YTHDC2Q9H6S0 1430 aaKnown RBP12.81□□□□□ -0.36
HDAC9-220ENST00000461409 MYOM2P54296 1465 aa12.81□□□□□ -0.36
HDAC9-220ENST00000461409 TMEM132EQ6IEE7 984 aa12.81□□□□□ -0.36
HDAC9-220ENST00000461409 KNDC1Q76NI1 1749 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 ADAMTS2O95450 1211 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 WAPLQ7Z5K2 1190 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 IFNL1Q8IU54 200 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 SIRT1Q96EB6 747 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 NGLY1Q96IV0 654 aa12.8□□□□□ -0.36
HDAC9-220ENST00000461409 C14orf93Q9H972 538 aaKnown RBP12.8□□□□□ -0.36
HDAC9-220ENST00000461409 NRXN1Q9ULB1 1477 aa12.79□□□□□ -0.36
HDAC9-220ENST00000461409 MAMSTRQ6ZN01 415 aa12.79□□□□□ -0.36
HDAC9-220ENST00000461409 BMP2KQ9NSY1 1161 aaPredicted RBP12.79□□□□□ -0.36
HDAC9-220ENST00000461409 DHX57Q6P158 1386 aaKnown RBP12.79□□□□□ -0.36
HDAC9-220ENST00000461409 POTEMA6NI47 508 aa12.78□□□□□ -0.36
HDAC9-220ENST00000461409 TIE1P35590 1138 aa12.78□□□□□ -0.36
HDAC9-220ENST00000461409 RBM6P78332 1123 aaKnown RBP12.78□□□□□ -0.36
HDAC9-220ENST00000461409 QTRT2Q9H974 415 aaKnown RBP12.78□□□□□ -0.36
HDAC9-220ENST00000461409 PLEKHH1Q9ULM0 1364 aa12.78□□□□□ -0.36
HDAC9-220ENST00000461409 PXDNQ92626 1479 aa12.78□□□□□ -0.36
HDAC9-220ENST00000461409 FOXO3O43524 673 aa12.77□□□□□ -0.37
HDAC9-220ENST00000461409 ATN1P54259 1190 aaPredicted RBP12.77□□□□□ -0.37
HDAC9-220ENST00000461409 COL22A1Q8NFW1 1626 aaPredicted RBP12.77□□□□□ -0.37
HDAC9-220ENST00000461409 CFAP70Q5T0N1 1121 aa12.76□□□□□ -0.37
HDAC9-220ENST00000461409 NUTM2FA1L443 756 aa12.75□□□□□ -0.37
HDAC9-220ENST00000461409 CHRM1P11229 460 aaPredicted RBP12.75□□□□□ -0.37
HDAC9-220ENST00000461409 FNBP4Q8N3X1 1017 aaPredicted RBP12.75□□□□□ -0.37
HDAC9-220ENST00000461409 UPF1Q92900 1129 aaKnown RBP eCLIP12.75□□□□□ -0.37
HDAC9-220ENST00000461409 USP21Q9UK80 565 aa12.75□□□□□ -0.37
HDAC9-220ENST00000461409 FMN2Q9NZ56 1722 aa12.74□□□□□ -0.37
HDAC9-220ENST00000461409 KIF1AQ12756 1690 aa12.74□□□□□ -0.37
HDAC9-220ENST00000461409 HRCP23327 699 aa12.74□□□□□ -0.37
HDAC9-220ENST00000461409 XPCQ01831 940 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-220ENST00000461409 STAC3Q96MF2 364 aa12.74□□□□□ -0.37
HDAC9-220ENST00000461409 TRPC5Q9UL62 973 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-220ENST00000461409 CIZ1Q9ULV3 898 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-220ENST00000461409 RGS12O14924 1447 aa12.73□□□□□ -0.37
HDAC9-220ENST00000461409 POTEGQ6S5H5 508 aa12.73□□□□□ -0.37
HDAC9-220ENST00000461409 PRAM1Q96QH2 718 aa12.73□□□□□ -0.37
HDAC9-220ENST00000461409 SCUBE2Q9NQ36 999 aa12.73□□□□□ -0.37
HDAC9-220ENST00000461409 POGKQ9P215 609 aa12.73□□□□□ -0.37
HDAC9-220ENST00000461409 DLC1Q96QB1 1528 aa12.72□□□□□ -0.37
HDAC9-220ENST00000461409 TTLL13PA6NNM8 815 aa12.72□□□□□ -0.37
HDAC9-220ENST00000461409 SPATA31A3Q5VYP0 1347 aa12.71□□□□□ -0.37
HDAC9-220ENST00000461409 PSME1Q06323 249 aa12.71□□□□□ -0.37
HDAC9-220ENST00000461409 PHF8Q9UPP1 1060 aa12.71□□□□□ -0.37
HDAC9-220ENST00000461409 ATRNO75882 1429 aa12.71□□□□□ -0.38
HDAC9-220ENST00000461409 SAFB2Q14151 953 aaKnown RBP eCLIP12.7□□□□□ -0.38
HDAC9-220ENST00000461409 KRT28Q7Z3Y7 464 aa12.7□□□□□ -0.38
HDAC9-220ENST00000461409 DCAF11Q8TEB1 546 aa12.7□□□□□ -0.38
HDAC9-220ENST00000461409 ANKARQ7Z5J8 1434 aa12.7□□□□□ -0.38
HDAC9-220ENST00000461409 EIF3AQ14152 1382 aaKnown RBP12.69□□□□□ -0.38
HDAC9-220ENST00000461409 ADGRB1O14514 1584 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 POTEJP0CG39 1038 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 PCDHB8Q9UN66 801 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 TNS3Q68CZ2 1445 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 ADGRB2O60241 1585 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 SBNO1A3KN83 1393 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 ATAD2Q6PL18 1390 aa12.69□□□□□ -0.38
HDAC9-220ENST00000461409 BCL9LQ86UU0 1499 aa12.68□□□□□ -0.38
HDAC9-220ENST00000461409 TRAK1Q9UPV9 953 aa12.68□□□□□ -0.38
HDAC9-220ENST00000461409 KDM2AQ9Y2K7 1162 aa12.68□□□□□ -0.38
HDAC9-220ENST00000461409 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
HDAC9-220ENST00000461409 HAP1P54257 671 aaPredicted RBP12.67□□□□□ -0.38
HDAC9-220ENST00000461409 MARF1Q9Y4F3 1742 aaKnown RBP12.66□□□□□ -0.38
HDAC9-220ENST00000461409 ZNF467Q7Z7K2 595 aaPredicted RBP12.66□□□□□ -0.38
HDAC9-220ENST00000461409 UNC5CLQ8IV45 518 aa12.65□□□□□ -0.38
HDAC9-220ENST00000461409 GJD4Q96KN9 370 aaPredicted RBP12.65□□□□□ -0.38
HDAC9-220ENST00000461409 MINK1Q8N4C8 1332 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-220ENST00000461409 SLIT2O94813 1529 aa12.64□□□□□ -0.39
HDAC9-220ENST00000461409 USP32Q8NFA0 1604 aa12.64□□□□□ -0.39
HDAC9-220ENST00000461409 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
HDAC9-220ENST00000461409 TMEM106CQ9BVX2 250 aa12.64□□□□□ -0.39
HDAC9-220ENST00000461409 HIRIP3Q9BW71 556 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-220ENST00000461409 GPRASP1Q5JY77 1395 aa12.64□□□□□ -0.39
HDAC9-220ENST00000461409 TULP4Q9NRJ4 1543 aa12.63□□□□□ -0.39
HDAC9-220ENST00000461409 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.63□□□□□ -0.39
HDAC9-220ENST00000461409 WASLO00401 505 aaPredicted RBP12.63□□□□□ -0.39
HDAC9-220ENST00000461409 PMFBP1Q8TBY8 1022 aa12.63□□□□□ -0.39
HDAC9-220ENST00000461409 EP400Q96L91 3159 aa12.63□□□□□ -0.39
HDAC9-220ENST00000461409 RGPD8O14715 1765 aaPredicted RBP12.63□□□□□ -0.39
HDAC9-220ENST00000461409 SEC24BO95487 1268 aa12.62□□□□□ -0.39
HDAC9-220ENST00000461409 TRIM35Q9UPQ4 493 aa12.62□□□□□ -0.39
HDAC9-220ENST00000461409 RALGAPBQ86X10 1494 aa12.61□□□□□ -0.39
HDAC9-220ENST00000461409 CABLES1Q8TDN4 633 aa12.61□□□□□ -0.39
HDAC9-220ENST00000461409 PCDH10Q9P2E7 1040 aa12.61□□□□□ -0.39
HDAC9-220ENST00000461409 CCDC125Q86Z20 511 aa12.6□□□□□ -0.39
HDAC9-220ENST00000461409 NGDNQ8NEJ9 315 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms