RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 EPAS1Q99814 870 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 VRTNQ9H8Y1 702 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 TFIP11Q9UBB9 837 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 KIF27Q86VH2 1401 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 DIXDC1Q155Q3 683 aa6.46□□□□□ -1.37
CCDC88A-209ENST00000456975 UCN2Q96RP3 112 aa6.46□□□□□ -1.37
CCDC88A-209ENST00000456975 PRM3Q9NNZ6 103 aa6.46□□□□□ -1.37
CCDC88A-209ENST00000456975 AMOTL2Q9Y2J4 779 aa6.46□□□□□ -1.37
CCDC88A-209ENST00000456975 IGF1RP08069 1367 aa6.46□□□□□ -1.38
CCDC88A-209ENST00000456975 TEX14Q8IWB6 1497 aa6.46□□□□□ -1.38
CCDC88A-209ENST00000456975 ANAPC15P60006 121 aa6.46□□□□□ -1.38
CCDC88A-209ENST00000456975 PPM1GO15355 546 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 PTMAP06454 111 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 ASXL2Q76L83 1435 aa6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 ABCC2Q92887 1545 aa6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 DDX11L8A8MPP1 907 aa6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 NUTM1Q86Y26 1132 aa6.45□□□□□ -1.38
CCDC88A-209ENST00000456975 PLB1Q6P1J6 1458 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 COL17A1Q9UMD9 1497 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 MAFGO15525 162 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 CD46P15529 392 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 CTDSPL2Q05D32 466 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 TYW1BQ6NUM6 668 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 EPS8L1Q8TE68 723 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 DNAJC2Q99543 621 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 NDUFB9Q9Y6M9 179 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 ZCCHC11Q5TAX3 1644 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 NEFMP07197 916 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 C6orf132Q5T0Z8 1188 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 TRIM34Q9BYJ4 488 aa6.44□□□□□ -1.38
CCDC88A-209ENST00000456975 RCCD1A6NED2 376 aa6.43□□□□□ -1.38
CCDC88A-209ENST00000456975 PRR7Q8TB68 274 aa6.43□□□□□ -1.38
CCDC88A-209ENST00000456975 CANXP27824 592 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 FAM193AP78312 1265 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 TSC1Q92574 1164 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 STAC3Q96MF2 364 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 C3orf80F5H4A9 247 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 GPATCH11Q8N954 259 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 LRRN4Q8WUT4 740 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 ALG2Q9H553 416 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 FAM198AQ9UFP1 575 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 EPRSP07814 1512 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 KIAA0586Q9BVV6 1533 aa6.42□□□□□ -1.38
CCDC88A-209ENST00000456975 PLCG2P16885 1265 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 TTC13Q8NBP0 860 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 HLA-CQ95604 372 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 CFAP43Q8NDM7 1665 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 SPATA31D1Q6ZQQ2 1576 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 PTPRGP23470 1445 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 GUCA2AQ02747 115 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 OS9Q13438 667 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 RBM46Q8TBY0 533 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 CDCA7LQ96GN5 454 aa6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 KIAA1522Q9P206 1035 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-209ENST00000456975 CARMIL1Q5VZK9 1371 aa6.4□□□□□ -1.38
CCDC88A-209ENST00000456975 PCF11O94913 1555 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-209ENST00000456975 TUSC1Q2TAM9 212 aa6.4□□□□□ -1.38
CCDC88A-209ENST00000456975 TBC1D9Q6ZT07 1266 aa6.4□□□□□ -1.38
CCDC88A-209ENST00000456975 DISP3Q9P2K9 1392 aa6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 SOCS7O14512 581 aa6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 KDM4AO75164 1064 aa6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 CNGB1Q14028 1251 aaPredicted RBP6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 WASHC4Q2M389 1173 aa6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 MAFBQ9Y5Q3 323 aaPredicted RBP6.4□□□□□ -1.39
CCDC88A-209ENST00000456975 ADAMTSL3P82987 1691 aa6.39□□□□□ -1.39
CCDC88A-209ENST00000456975 C19orf67A6NJJ6 358 aa6.39□□□□□ -1.39
CCDC88A-209ENST00000456975 PRSS12P56730 875 aa6.39□□□□□ -1.39
CCDC88A-209ENST00000456975 COLQQ9Y215 455 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-209ENST00000456975 ATMINO43313 823 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 ATG7O95352 703 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 STK32AQ8WU08 396 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 L3MBTL3Q96JM7 780 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 EEA1Q15075 1411 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 CARMIL2Q6F5E8 1435 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 IQGAP2Q13576 1575 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 RIMS1Q86UR5 1692 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 MADDQ8WXG6 1647 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 UHRF1BP1LA0JNW5 1464 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 PRXQ9BXM0 1461 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 ILDR2Q71H61 639 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 MRRFQ96E11 262 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 ADAM33Q9BZ11 813 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 IGSF5Q9NSI5 407 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 PCDHGC3Q9UN70 934 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 TNIKQ9UKE5 1360 aa6.38□□□□□ -1.39
CCDC88A-209ENST00000456975 BCORL1Q5H9F3 1711 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 CLGNO14967 610 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 NOM1Q5C9Z4 860 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 PHLDB3Q6NSJ2 640 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 TXNDC2Q86VQ3 553 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 ZNF454Q8N9F8 522 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 CERKQ8TCT0 537 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 YTHDC1Q96MU7 727 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 EYA1Q99502 592 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 PCDHGA4Q9Y5G9 962 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 PTPRMP28827 1452 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 RAPGEF2Q9Y4G8 1499 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 RBM47A0AV96 593 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 SLC34A2O95436 690 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 SCNN1AP37088 669 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms