RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 U2AF1L5P0DN76 240 aaPredicted RBP14.72□□□□□ -0.05
RFX3-208ENST00000449234 U2AF1Q01081 240 aaKnown RBP eCLIP14.72□□□□□ -0.05
RFX3-208ENST00000449234 CABP2Q9NPB3 220 aa14.72□□□□□ -0.05
RFX3-208ENST00000449234 IGHDP01880 384 aa14.71□□□□□ -0.05
RFX3-208ENST00000449234 SRPK2P78362 688 aaKnown RBP14.71□□□□□ -0.05
RFX3-208ENST00000449234 NBR1Q14596 966 aa14.71□□□□□ -0.05
RFX3-208ENST00000449234 PLEKHF1Q96S99 279 aa14.71□□□□□ -0.05
RFX3-208ENST00000449234 BCL11AQ9H165 835 aa14.71□□□□□ -0.05
RFX3-208ENST00000449234 POGKQ9P215 609 aa14.71□□□□□ -0.05
RFX3-208ENST00000449234 A0A1W2PP64 1363 aa14.71□□□□□ -0.06
RFX3-208ENST00000449234 YEATS2Q9ULM3 1422 aa14.7□□□□□ -0.06
RFX3-208ENST00000449234 FYB1O15117 783 aa14.7□□□□□ -0.06
RFX3-208ENST00000449234 MKRN4PQ13434 485 aaPredicted RBP14.7□□□□□ -0.06
RFX3-208ENST00000449234 ZKSCAN2Q63HK3 967 aa14.7□□□□□ -0.06
RFX3-208ENST00000449234 COL3A1P02461 1466 aaPredicted RBP14.69□□□□□ -0.06
RFX3-208ENST00000449234 FCHSD2O94868 740 aa14.69□□□□□ -0.06
RFX3-208ENST00000449234 TMPOP42166 694 aaKnown RBP14.69□□□□□ -0.06
RFX3-208ENST00000449234 COG6Q9Y2V7 657 aa14.69□□□□□ -0.06
RFX3-208ENST00000449234 ALKQ9UM73 1620 aa14.69□□□□□ -0.06
RFX3-208ENST00000449234 ARHGEF40Q8TER5 1519 aa14.68□□□□□ -0.06
RFX3-208ENST00000449234 TNNT2P45379 298 aaPredicted RBP14.68□□□□□ -0.06
RFX3-208ENST00000449234 BRPF1P55201 1214 aaPredicted RBP14.68□□□□□ -0.06
RFX3-208ENST00000449234 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.68□□□□□ -0.06
RFX3-208ENST00000449234 PANK1Q8TE04 598 aa14.68□□□□□ -0.06
RFX3-208ENST00000449234 CHMP4BQ9H444 224 aaKnown RBP14.68□□□□□ -0.06
RFX3-208ENST00000449234 IPO8O15397 1037 aaKnown RBP14.67□□□□□ -0.06
RFX3-208ENST00000449234 DIAPH1O60610 1272 aaKnown RBP14.67□□□□□ -0.06
RFX3-208ENST00000449234 HDGFP51858 240 aaKnown RBP14.67□□□□□ -0.06
RFX3-208ENST00000449234 MVPQ14764 893 aaKnown RBP14.67□□□□□ -0.06
RFX3-208ENST00000449234 NEUROD2Q15784 382 aa14.67□□□□□ -0.06
RFX3-208ENST00000449234 ALDH1L2Q3SY69 923 aa14.67□□□□□ -0.06
RFX3-208ENST00000449234 PRAM1Q96QH2 718 aa14.67□□□□□ -0.06
RFX3-208ENST00000449234 ATP7BP35670 1465 aa14.67□□□□□ -0.06
RFX3-208ENST00000449234 CDC42BPGQ6DT37 1551 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 NLRP1Q9C000 1473 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 CD163L1Q9NR16 1453 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 NEFMP07197 916 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 RGS3P49796 1198 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 CALD1Q05682 793 aaKnown RBP14.66□□□□□ -0.06
RFX3-208ENST00000449234 DZIP1LQ8IYY4 767 aaKnown RBP14.66□□□□□ -0.06
RFX3-208ENST00000449234 CDK19Q9BWU1 502 aa14.66□□□□□ -0.06
RFX3-208ENST00000449234 BECN1Q14457 450 aa14.65□□□□□ -0.06
RFX3-208ENST00000449234 FRAT1Q92837 279 aaPredicted RBP14.65□□□□□ -0.06
RFX3-208ENST00000449234 AKT1S1Q96B36 256 aa14.65□□□□□ -0.06
RFX3-208ENST00000449234 DDX19BQ9UMR2 479 aa14.65□□□□□ -0.06
RFX3-208ENST00000449234 RRP7AQ9Y3A4 280 aaKnown RBP14.65□□□□□ -0.06
RFX3-208ENST00000449234 SPATA31D1Q6ZQQ2 1576 aa14.64□□□□□ -0.07
RFX3-208ENST00000449234 VIRMAQ69YN4 1812 aaKnown RBP14.64□□□□□ -0.07
RFX3-208ENST00000449234 HDAC1Q13547 482 aaPredicted RBP14.64□□□□□ -0.07
RFX3-208ENST00000449234 STK26Q9P289 416 aa14.64□□□□□ -0.07
RFX3-208ENST00000449234 STAG3Q9UJ98 1225 aa14.64□□□□□ -0.07
RFX3-208ENST00000449234 TRIM35Q9UPQ4 493 aa14.64□□□□□ -0.07
RFX3-208ENST00000449234 UPF2Q9HAU5 1272 aaKnown RBP14.63□□□□□ -0.07
RFX3-208ENST00000449234 MYO5BQ9ULV0 1848 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 NUTM2DQ5VT03 806 aaPredicted RBP14.62□□□□□ -0.07
RFX3-208ENST00000449234 PPIP5K1Q6PFW1 1433 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 GGNBP2Q9H3C7 697 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 PCDHB15Q9Y5E8 787 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 A2ML1A8K2U0 1454 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 MINK1Q8N4C8 1332 aaPredicted RBP14.62□□□□□ -0.07
RFX3-208ENST00000449234 KIF16BQ96L93 1317 aa14.62□□□□□ -0.07
RFX3-208ENST00000449234 U2SURPO15042 1029 aaKnown RBP14.61□□□□□ -0.07
RFX3-208ENST00000449234 SKAP1Q86WV1 359 aa14.61□□□□□ -0.07
RFX3-208ENST00000449234 PDZRN3Q9UPQ7 1066 aa14.61□□□□□ -0.07
RFX3-208ENST00000449234 AATKQ6ZMQ8 1374 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 FAM135BQ49AJ0 1406 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 RIMS2Q9UQ26 1411 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 SPDYE2BA6NHP3 402 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 SPDYE6P0CI01 402 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 RIPK4P57078 832 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 EXOSC9Q06265 439 aaKnown RBP14.6□□□□□ -0.07
RFX3-208ENST00000449234 SPDYE2Q495Y8 402 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 ATF7IPQ6VMQ6 1270 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 FTSJ3Q8IY81 847 aaKnown RBP14.6□□□□□ -0.07
RFX3-208ENST00000449234 ARHGAP45Q92619 1136 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 CABP1Q9NZU7 370 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 USP19O94966 1318 aa14.6□□□□□ -0.07
RFX3-208ENST00000449234 RLBP1P12271 317 aa14.59□□□□□ -0.07
RFX3-208ENST00000449234 FAM69CQ0P6D2 419 aa14.59□□□□□ -0.07
RFX3-208ENST00000449234 FBXO31Q5XUX0 539 aaPredicted RBP14.59□□□□□ -0.07
RFX3-208ENST00000449234 ZNF692Q9BU19 519 aaPredicted RBP14.59□□□□□ -0.07
RFX3-208ENST00000449234 KIF20BQ96Q89 1820 aa14.59□□□□□ -0.07
RFX3-208ENST00000449234 CPSF1Q10570 1443 aaKnown RBP14.58□□□□□ -0.07
RFX3-208ENST00000449234 EDC4Q6P2E9 1401 aaKnown RBP14.58□□□□□ -0.07
RFX3-208ENST00000449234 LMOD3Q0VAK6 560 aa14.58□□□□□ -0.08
RFX3-208ENST00000449234 SAFB2Q14151 953 aaKnown RBP eCLIP14.58□□□□□ -0.08
RFX3-208ENST00000449234 NFKBIBQ15653 356 aa14.58□□□□□ -0.08
RFX3-208ENST00000449234 SMC4Q9NTJ3 1288 aa14.58□□□□□ -0.08
RFX3-208ENST00000449234 LAS1LQ9Y4W2 734 aaKnown RBP14.58□□□□□ -0.08
RFX3-208ENST00000449234 DIP2BQ9P265 1576 aa14.57□□□□□ -0.08
RFX3-208ENST00000449234 EIF5BO60841 1220 aaKnown RBP14.57□□□□□ -0.08
RFX3-208ENST00000449234 SMC5Q8IY18 1101 aa14.57□□□□□ -0.08
RFX3-208ENST00000449234 SSH1Q8WYL5 1049 aa14.57□□□□□ -0.08
RFX3-208ENST00000449234 WASLO00401 505 aaPredicted RBP14.56□□□□□ -0.08
RFX3-208ENST00000449234 GNAI1P63096 354 aa14.56□□□□□ -0.08
RFX3-208ENST00000449234 NFE2L2Q16236 605 aa14.56□□□□□ -0.08
RFX3-208ENST00000449234 RSPH6AQ9H0K4 717 aa14.56□□□□□ -0.08
RFX3-208ENST00000449234 POLKQ9UBT6 870 aa14.56□□□□□ -0.08
RFX3-208ENST00000449234 TECPR2O15040 1411 aa14.56□□□□□ -0.08
RFX3-208ENST00000449234 TRIM27P14373 513 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms