RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NECTIN2Q92692 538 aa14.71□□□□□ -0.05
MSH6-204ENST00000445503 GRPEL1Q9HAV7 217 aa14.71□□□□□ -0.05
MSH6-204ENST00000445503 FBXO31Q5XUX0 539 aaPredicted RBP14.71□□□□□ -0.06
MSH6-204ENST00000445503 MCTP1Q6DN14 999 aa14.7□□□□□ -0.06
MSH6-204ENST00000445503 API5Q9BZZ5 524 aaKnown RBP14.7□□□□□ -0.06
MSH6-204ENST00000445503 HDAC1Q13547 482 aaPredicted RBP14.7□□□□□ -0.06
MSH6-204ENST00000445503 TRIM35Q9UPQ4 493 aa14.7□□□□□ -0.06
MSH6-204ENST00000445503 PTMAP06454 111 aaKnown RBP14.7□□□□□ -0.06
MSH6-204ENST00000445503 TNPO1Q92973 898 aaKnown RBP14.7□□□□□ -0.06
MSH6-204ENST00000445503 MSNP26038 577 aaKnown RBP14.7□□□□□ -0.06
MSH6-204ENST00000445503 LMOD3Q0VAK6 560 aa14.7□□□□□ -0.06
MSH6-204ENST00000445503 CDC45O75419 566 aa14.69□□□□□ -0.06
MSH6-204ENST00000445503 FCHSD2O94868 740 aa14.69□□□□□ -0.06
MSH6-204ENST00000445503 RTF1Q92541 710 aaKnown RBP14.69□□□□□ -0.06
MSH6-204ENST00000445503 TSPYL6Q8N831 410 aa14.69□□□□□ -0.06
MSH6-204ENST00000445503 FAM83GA6ND36 823 aa14.69□□□□□ -0.06
MSH6-204ENST00000445503 RRAGDQ9NQL2 400 aaPredicted RBP14.69□□□□□ -0.06
MSH6-204ENST00000445503 TRIM6-TRIM34B2RNG4 842 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 ANKRD36BQ8N2N9 1353 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 SYNMO15061 1565 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 IQGAP3Q86VI3 1631 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 GCC1Q96CN9 775 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 RTEL1-TNFRSF6BF6WH68 1400 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 E9PCH4 1651 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 TXNDC2Q86VQ3 553 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 ZBTB40Q9NUA8 1239 aa14.68□□□□□ -0.06
MSH6-204ENST00000445503 NFE2L2Q16236 605 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 NME9Q86XW9 330 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 ARID3AQ99856 593 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 MYO5CQ9NQX4 1742 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 PLCB2Q00722 1185 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 SKOR2Q2VWA4 1001 aaPredicted RBP14.67□□□□□ -0.06
MSH6-204ENST00000445503 PHACTR3Q96KR7 559 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 K7ELQ4 463 aaPredicted RBP14.67□□□□□ -0.06
MSH6-204ENST00000445503 NUCB1Q02818 461 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 UNC13BO14795 1591 aa14.67□□□□□ -0.06
MSH6-204ENST00000445503 TBC1D9Q6ZT07 1266 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 A0A1W2PP64 1363 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 SSFA2P28290 1259 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 SMC5Q8IY18 1101 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 RILPL2Q969X0 211 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 SMARCA5O60264 1052 aaPredicted RBP14.66□□□□□ -0.06
MSH6-204ENST00000445503 ST18O60284 1047 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 ZRANB1Q9UGI0 708 aa14.66□□□□□ -0.06
MSH6-204ENST00000445503 KDM5AP29375 1690 aaKnown RBP14.65□□□□□ -0.06
MSH6-204ENST00000445503 SULT6B1Q6IMI4 303 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 ANTXR1Q9H6X2 564 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 SLC52A1Q9NWF4 448 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 CAVIN1Q6NZI2 390 aaKnown RBP14.65□□□□□ -0.06
MSH6-204ENST00000445503 MIS18AQ9NYP9 233 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 ATAD2Q6PL18 1390 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 TRPM2O94759 1503 aa14.65□□□□□ -0.06
MSH6-204ENST00000445503 LTV1Q96GA3 475 aaPredicted RBP14.64□□□□□ -0.07
MSH6-204ENST00000445503 CD109Q6YHK3 1445 aa14.64□□□□□ -0.07
MSH6-204ENST00000445503 ATP7AQ04656 1500 aa14.64□□□□□ -0.07
MSH6-204ENST00000445503 PTMSP20962 102 aa14.64□□□□□ -0.07
MSH6-204ENST00000445503 ALDH1L2Q3SY69 923 aa14.64□□□□□ -0.07
MSH6-204ENST00000445503 CYB5RLQ6IPT4 315 aa14.64□□□□□ -0.07
MSH6-204ENST00000445503 HAP1P54257 671 aaPredicted RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 MBIPQ9NS73 344 aa14.63□□□□□ -0.07
MSH6-204ENST00000445503 NASPP49321 788 aaPredicted RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 C16orf71Q8IYS4 520 aaPredicted RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 OSCARQ8IYS5 282 aa14.63□□□□□ -0.07
MSH6-204ENST00000445503 HSP90AA2PQ14568 343 aaPredicted RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 DNTTIP2Q5QJE6 756 aaKnown RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 CLTCL1P53675 1640 aa14.63□□□□□ -0.07
MSH6-204ENST00000445503 HMMRO75330 724 aa14.63□□□□□ -0.07
MSH6-204ENST00000445503 INTS3Q68E01 1043 aaKnown RBP14.63□□□□□ -0.07
MSH6-204ENST00000445503 BMP2KLQ5H9B9 411 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 MCM10Q7L590 875 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 STK31Q9BXU1 1019 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 ASXL2Q76L83 1435 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 MADDQ8WXG6 1647 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 ABCC11Q96J66 1382 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 ESPNB1AK53 854 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 C8orf58Q8NAV2 365 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 ABCC1P33527 1531 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 PRPF40AO75400 957 aaKnown RBP14.62□□□□□ -0.07
MSH6-204ENST00000445503 PODXL2Q9NZ53 605 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 POLKQ9UBT6 870 aa14.62□□□□□ -0.07
MSH6-204ENST00000445503 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.61□□□□□ -0.07
MSH6-204ENST00000445503 NSD2O96028 1365 aa14.61□□□□□ -0.07
MSH6-204ENST00000445503 KRT24Q2M2I5 525 aa14.61□□□□□ -0.07
MSH6-204ENST00000445503 MCCP23508 829 aa14.61□□□□□ -0.07
MSH6-204ENST00000445503 PLXNC1O60486 1568 aa14.61□□□□□ -0.07
MSH6-204ENST00000445503 VAMP4O75379 141 aa14.6□□□□□ -0.07
MSH6-204ENST00000445503 SLC4A2P04920 1241 aa14.6□□□□□ -0.07
MSH6-204ENST00000445503 OS9Q13438 667 aaPredicted RBP14.6□□□□□ -0.07
MSH6-204ENST00000445503 CFAP44Q96MT7 982 aa14.6□□□□□ -0.07
MSH6-204ENST00000445503 IL16Q14005 1332 aa14.6□□□□□ -0.07
MSH6-204ENST00000445503 RNF214Q8ND24 703 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 ANO2Q9NQ90 1003 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 NCKAP5LQ9HCH0 1330 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 AMPHP49418 695 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 MRPL50Q8N5N7 158 aaKnown RBP14.59□□□□□ -0.07
MSH6-204ENST00000445503 GAS2L2Q8NHY3 880 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 REC8O95072 547 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 PLEKHF1Q96S99 279 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 NEK4P51957 841 aa14.59□□□□□ -0.07
MSH6-204ENST00000445503 TSPYL4Q9UJ04 414 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms