RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 CDCA8Q53HL2 280 aa22.37■■□□□ 1.17
USP39-205ENST00000442708 ABCA3Q99758 1704 aa22.36■■□□□ 1.17
USP39-205ENST00000442708 A0A1W2PP64 1363 aa22.36■■□□□ 1.17
USP39-205ENST00000442708 SPATA31A6Q5VVP1 1343 aa22.35■■□□□ 1.17
USP39-205ENST00000442708 CRYBG1Q9Y4K1 1723 aa22.35■■□□□ 1.17
USP39-205ENST00000442708 ZEB1P37275 1124 aaPredicted RBP22.35■■□□□ 1.17
USP39-205ENST00000442708 LMOD2Q6P5Q4 547 aa22.35■■□□□ 1.17
USP39-205ENST00000442708 KTN1Q86UP2 1357 aaKnown RBP22.35■■□□□ 1.17
USP39-205ENST00000442708 NINLQ9Y2I6 1382 aa22.35■■□□□ 1.17
USP39-205ENST00000442708 NUTM2BA6NNL0 878 aaPredicted RBP22.34■■□□□ 1.17
USP39-205ENST00000442708 NUTM2EB1AL46 878 aaPredicted RBP22.34■■□□□ 1.17
USP39-205ENST00000442708 NUTM2AQ8IVF1 878 aaPredicted RBP22.34■■□□□ 1.17
USP39-205ENST00000442708 ZNF692Q9BU19 519 aaPredicted RBP22.34■■□□□ 1.17
USP39-205ENST00000442708 PIK3C2AO00443 1686 aa22.33■■□□□ 1.17
USP39-205ENST00000442708 ARHGEF10O15013 1369 aa22.33■■□□□ 1.17
USP39-205ENST00000442708 PLEKHG5O94827 1062 aa22.32■■□□□ 1.16
USP39-205ENST00000442708 CABLES1Q8TDN4 633 aa22.32■■□□□ 1.16
USP39-205ENST00000442708 POLR3GLQ9BT43 218 aa22.32■■□□□ 1.16
USP39-205ENST00000442708 PHF23Q9BUL5 403 aaPredicted RBP22.32■■□□□ 1.16
USP39-205ENST00000442708 KIF7Q2M1P5 1343 aa22.31■■□□□ 1.16
USP39-205ENST00000442708 BRD4O60885 1362 aaPredicted RBP22.31■■□□□ 1.16
USP39-205ENST00000442708 NUTM2GQ5VZR2 741 aa22.31■■□□□ 1.16
USP39-205ENST00000442708 MARF1Q9Y4F3 1742 aaKnown RBP22.31■■□□□ 1.16
USP39-205ENST00000442708 TTC21BQ7Z4L5 1316 aa22.31■■□□□ 1.16
USP39-205ENST00000442708 ANKRD36BQ8N2N9 1353 aa22.3■■□□□ 1.16
USP39-205ENST00000442708 HDGFL2Q7Z4V5 671 aaPredicted RBP22.3■■□□□ 1.16
USP39-205ENST00000442708 TERF2IPQ9NYB0 399 aa22.3■■□□□ 1.16
USP39-205ENST00000442708 PHRF1Q9P1Y6 1649 aaKnown RBP22.28■■□□□ 1.16
USP39-205ENST00000442708 ABTB2Q8N961 1025 aa22.28■■□□□ 1.16
USP39-205ENST00000442708 EDC4Q6P2E9 1401 aaKnown RBP22.28■■□□□ 1.16
USP39-205ENST00000442708 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.26■■□□□ 1.15
USP39-205ENST00000442708 CARD14Q9BXL6 1004 aa22.26■■□□□ 1.15
USP39-205ENST00000442708 RGS17Q9UGC6 210 aaPredicted RBP22.26■■□□□ 1.15
USP39-205ENST00000442708 ZRANB1Q9UGI0 708 aa22.26■■□□□ 1.15
USP39-205ENST00000442708 ADAMTS2O95450 1211 aa22.25■■□□□ 1.15
USP39-205ENST00000442708 WASHC2AQ641Q2 1341 aa22.25■■□□□ 1.15
USP39-205ENST00000442708 TTC21AQ8NDW8 1320 aa22.25■■□□□ 1.15
USP39-205ENST00000442708 CCDC7Q96M83 1385 aa22.25■■□□□ 1.15
USP39-205ENST00000442708 NME9Q86XW9 330 aa22.24■■□□□ 1.15
USP39-205ENST00000442708 USP19O94966 1318 aa22.23■■□□□ 1.15
USP39-205ENST00000442708 USP54Q70EL1 1684 aa22.23■■□□□ 1.15
USP39-205ENST00000442708 NLRP6P59044 892 aa22.22■■□□□ 1.15
USP39-205ENST00000442708 MEX3CQ5U5Q3 659 aaKnown RBP22.21■■□□□ 1.15
USP39-205ENST00000442708 SLIT3O75094 1523 aa22.21■■□□□ 1.15
USP39-205ENST00000442708 NLRP13Q86W25 1043 aa22.2■■□□□ 1.14
USP39-205ENST00000442708 NSD3Q9BZ95 1437 aa22.2■■□□□ 1.14
USP39-205ENST00000442708 C8orf37Q96NL8 207 aa22.19■■□□□ 1.14
USP39-205ENST00000442708 PANK3Q9H999 370 aa22.19■■□□□ 1.14
USP39-205ENST00000442708 USP31Q70CQ4 1352 aa22.19■■□□□ 1.14
USP39-205ENST00000442708 KIF20BQ96Q89 1820 aa22.19■■□□□ 1.14
USP39-205ENST00000442708 HAP1P54257 671 aaPredicted RBP22.18■■□□□ 1.14
USP39-205ENST00000442708 GCP02774 474 aa22.16■■□□□ 1.14
USP39-205ENST00000442708 PLCH1Q4KWH8 1693 aa22.16■■□□□ 1.14
USP39-205ENST00000442708 OVOS2A0A0J9YW53 1432 aa22.15■■□□□ 1.14
USP39-205ENST00000442708 OVOS2Q6IE36 1432 aa22.15■■□□□ 1.14
USP39-205ENST00000442708 FAM83GA6ND36 823 aa22.15■■□□□ 1.14
USP39-205ENST00000442708 FYB1O15117 783 aa22.15■■□□□ 1.14
USP39-205ENST00000442708 AFF2P51816 1311 aa22.14■■□□□ 1.14
USP39-205ENST00000442708 ZC3H6P61129 1189 aaKnown RBP22.14■■□□□ 1.13
USP39-205ENST00000442708 NGLY1Q96IV0 654 aa22.14■■□□□ 1.13
USP39-205ENST00000442708 NFAT5O94916 1531 aa22.14■■□□□ 1.13
USP39-205ENST00000442708 KIAA0232Q92628 1395 aa22.13■■□□□ 1.13
USP39-205ENST00000442708 COL14A1Q05707 1796 aaKnown RBP22.12■■□□□ 1.13
USP39-205ENST00000442708 GGNBP2Q9H3C7 697 aa22.12■■□□□ 1.13
USP39-205ENST00000442708 SLIT2O94813 1529 aa22.11■■□□□ 1.13
USP39-205ENST00000442708 SOX12O15370 315 aa22.11■■□□□ 1.13
USP39-205ENST00000442708 FNBP4Q8N3X1 1017 aaPredicted RBP22.11■■□□□ 1.13
USP39-205ENST00000442708 BCL9LQ86UU0 1499 aa22.1■■□□□ 1.13
USP39-205ENST00000442708 CHRNA2Q15822 529 aa22.1■■□□□ 1.13
USP39-205ENST00000442708 CPDO75976 1380 aa22.1■■□□□ 1.13
USP39-205ENST00000442708 NWD2Q9ULI1 1742 aa22.09■■□□□ 1.13
USP39-205ENST00000442708 LMO7Q8WWI1 1683 aa22.09■■□□□ 1.13
USP39-205ENST00000442708 COL18A1P39060 1754 aa22.09■■□□□ 1.13
USP39-205ENST00000442708 NRAPQ86VF7 1730 aa22.09■■□□□ 1.13
USP39-205ENST00000442708 ANKRD26Q9UPS8 1709 aa22.09■■□□□ 1.13
USP39-205ENST00000442708 POTEAQ6S8J7 498 aa22.08■■□□□ 1.13
USP39-205ENST00000442708 PRDM11Q9NQV5 511 aa22.08■■□□□ 1.13
USP39-205ENST00000442708 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.08■■□□□ 1.12
USP39-205ENST00000442708 LTN1O94822 1766 aa22.07■■□□□ 1.12
USP39-205ENST00000442708 PER1O15534 1290 aaPredicted RBP22.07■■□□□ 1.12
USP39-205ENST00000442708 FBLN1P23142 703 aa22.07■■□□□ 1.12
USP39-205ENST00000442708 KCNH5Q8NCM2 988 aa22.07■■□□□ 1.12
USP39-205ENST00000442708 COG3Q96JB2 828 aa22.07■■□□□ 1.12
USP39-205ENST00000442708 CGNL1Q0VF96 1302 aa22.06■■□□□ 1.12
USP39-205ENST00000442708 USP21Q9UK80 565 aa22.06■■□□□ 1.12
USP39-205ENST00000442708 RGPD5Q99666 1765 aa22.06■■□□□ 1.12
USP39-205ENST00000442708 CAMTA1Q9Y6Y1 1673 aa22.05■■□□□ 1.12
USP39-205ENST00000442708 ARHGEF25Q86VW2 580 aa22.05■■□□□ 1.12
USP39-205ENST00000442708 ZBTB7CA1YPR0 619 aa22.04■■□□□ 1.12
USP39-205ENST00000442708 BTG4Q9NY30 223 aa22.04■■□□□ 1.12
USP39-205ENST00000442708 AMER1Q5JTC6 1135 aaPredicted RBP22.03■■□□□ 1.12
USP39-205ENST00000442708 ZNF772Q68DY9 489 aaPredicted RBP22.03■■□□□ 1.12
USP39-205ENST00000442708 UNC5CLQ8IV45 518 aa22.02■■□□□ 1.12
USP39-205ENST00000442708 KNSTRNQ9Y448 316 aa22.02■■□□□ 1.12
USP39-205ENST00000442708 ATRNO75882 1429 aa22.02■■□□□ 1.12
USP39-205ENST00000442708 AATKQ6ZMQ8 1374 aa22.01■■□□□ 1.11
USP39-205ENST00000442708 AXIN2Q9Y2T1 843 aa22.01■■□□□ 1.11
USP39-205ENST00000442708 QTRT2Q9H974 415 aaKnown RBP22■■□□□ 1.11
USP39-205ENST00000442708 MAP2P11137 1827 aaKnown RBP21.98■■□□□ 1.11
USP39-205ENST00000442708 MAP3K19Q56UN5 1328 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms