RNA–Protein interactions for RNA: ENST00000441580.5

CPSF4-206, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2 BASIC

Gene CPSF4, Length 942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-206ENST00000441580 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
CPSF4-206ENST00000441580 AMOTL2Q9Y2J4 779 aa17.36■□□□□ 0.37
CPSF4-206ENST00000441580 SALL2Q9Y467 1007 aaPredicted RBP17.36■□□□□ 0.37
CPSF4-206ENST00000441580 PRR36Q9H6K5 1346 aa17.36■□□□□ 0.37
CPSF4-206ENST00000441580 PNPLA6Q8IY17 1366 aa17.36■□□□□ 0.37
CPSF4-206ENST00000441580 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
CPSF4-206ENST00000441580 SENP3-EIF4A1A0A087X0R7 540 aa17.34■□□□□ 0.37
CPSF4-206ENST00000441580 USP6P35125 1406 aa17.34■□□□□ 0.37
CPSF4-206ENST00000441580 IRX6P78412 446 aaPredicted RBP17.34■□□□□ 0.37
CPSF4-206ENST00000441580 ANKLE2Q86XL3 938 aa17.34■□□□□ 0.37
CPSF4-206ENST00000441580 CCDC146Q8IYE0 955 aa17.34■□□□□ 0.37
CPSF4-206ENST00000441580 USP54Q70EL1 1684 aa17.33■□□□□ 0.37
CPSF4-206ENST00000441580 APAF1O14727 1248 aa17.33■□□□□ 0.36
CPSF4-206ENST00000441580 NPHP4O75161 1426 aaPredicted RBP17.32■□□□□ 0.36
CPSF4-206ENST00000441580 PLEKHG3A1L390 1219 aa17.32■□□□□ 0.36
CPSF4-206ENST00000441580 E9PSI1 815 aa17.32■□□□□ 0.36
CPSF4-206ENST00000441580 OVOS2A0A0J9YW53 1432 aa17.31■□□□□ 0.36
CPSF4-206ENST00000441580 OVOS2Q6IE36 1432 aa17.31■□□□□ 0.36
CPSF4-206ENST00000441580 CDCA7LQ96GN5 454 aa17.31■□□□□ 0.36
CPSF4-206ENST00000441580 CCDC27Q2M243 656 aa17.3■□□□□ 0.36
CPSF4-206ENST00000441580 DUSP27Q5VZP5 1158 aa17.3■□□□□ 0.36
CPSF4-206ENST00000441580 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.3■□□□□ 0.36
CPSF4-206ENST00000441580 MAP2P11137 1827 aaKnown RBP17.3■□□□□ 0.36
CPSF4-206ENST00000441580 SLFN5Q08AF3 891 aa17.29■□□□□ 0.36
CPSF4-206ENST00000441580 COG3Q96JB2 828 aa17.29■□□□□ 0.36
CPSF4-206ENST00000441580 PNNQ9H307 717 aaKnown RBP17.29■□□□□ 0.36
CPSF4-206ENST00000441580 TTC21AQ8NDW8 1320 aa17.28■□□□□ 0.36
CPSF4-206ENST00000441580 U2AF1L5P0DN76 240 aaPredicted RBP17.28■□□□□ 0.36
CPSF4-206ENST00000441580 U2AF1Q01081 240 aaKnown RBP eCLIP17.28■□□□□ 0.36
CPSF4-206ENST00000441580 SSH2Q76I76 1423 aa17.28■□□□□ 0.36
CPSF4-206ENST00000441580 ADGRL3Q9HAR2 1447 aa17.28■□□□□ 0.36
CPSF4-206ENST00000441580 DIAPH1O60610 1272 aaKnown RBP17.27■□□□□ 0.36
CPSF4-206ENST00000441580 MAPK8IP3Q9UPT6 1336 aa17.26■□□□□ 0.35
CPSF4-206ENST00000441580 NME9Q86XW9 330 aa17.26■□□□□ 0.35
CPSF4-206ENST00000441580 TRMT2AQ8IZ69 625 aaKnown RBP17.26■□□□□ 0.35
CPSF4-206ENST00000441580 PHF23Q9BUL5 403 aaPredicted RBP17.26■□□□□ 0.35
CPSF4-206ENST00000441580 RGPD8O14715 1765 aaPredicted RBP17.25■□□□□ 0.35
CPSF4-206ENST00000441580 ACEP12821 1306 aa17.25■□□□□ 0.35
CPSF4-206ENST00000441580 TTC21BQ7Z4L5 1316 aa17.25■□□□□ 0.35
CPSF4-206ENST00000441580 KCNA6P17658 529 aa17.25■□□□□ 0.35
CPSF4-206ENST00000441580 PIK3C2AO00443 1686 aa17.25■□□□□ 0.35
CPSF4-206ENST00000441580 WDR63Q8IWG1 891 aa17.24■□□□□ 0.35
CPSF4-206ENST00000441580 WWC1Q8IX03 1113 aa17.24■□□□□ 0.35
CPSF4-206ENST00000441580 TCP11L2Q8N4U5 519 aa17.24■□□□□ 0.35
CPSF4-206ENST00000441580 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
CPSF4-206ENST00000441580 USP31Q70CQ4 1352 aa17.24■□□□□ 0.35
CPSF4-206ENST00000441580 POLKQ9UBT6 870 aa17.23■□□□□ 0.35
CPSF4-206ENST00000441580 U2SURPO15042 1029 aaKnown RBP17.22■□□□□ 0.35
CPSF4-206ENST00000441580 NCKAP5LQ9HCH0 1330 aa17.21■□□□□ 0.35
CPSF4-206ENST00000441580 NEFMP07197 916 aa17.2■□□□□ 0.34
CPSF4-206ENST00000441580 PLEKHF1Q96S99 279 aa17.2■□□□□ 0.34
CPSF4-206ENST00000441580 KIF1AQ12756 1690 aa17.2■□□□□ 0.34
CPSF4-206ENST00000441580 MYH16Q9H6N6 1097 aa17.19■□□□□ 0.34
CPSF4-206ENST00000441580 RGPD1P0DJD0 1748 aa17.18■□□□□ 0.34
CPSF4-206ENST00000441580 PEAK1Q9H792 1746 aa17.18■□□□□ 0.34
CPSF4-206ENST00000441580 MARF1Q9Y4F3 1742 aaKnown RBP17.18■□□□□ 0.34
CPSF4-206ENST00000441580 FCHSD2O94868 740 aa17.18■□□□□ 0.34
CPSF4-206ENST00000441580 IL16Q14005 1332 aa17.18■□□□□ 0.34
CPSF4-206ENST00000441580 CCDC136Q96JN2 1154 aa17.17■□□□□ 0.34
CPSF4-206ENST00000441580 EMILIN1Q9Y6C2 1016 aa17.17■□□□□ 0.34
CPSF4-206ENST00000441580 NGDNQ8NEJ9 315 aaKnown RBP17.16■□□□□ 0.34
CPSF4-206ENST00000441580 KIF24Q5T7B8 1368 aa17.15■□□□□ 0.34
CPSF4-206ENST00000441580 TMPOP42166 694 aaKnown RBP17.15■□□□□ 0.34
CPSF4-206ENST00000441580 B4GALNT3Q6L9W6 998 aa17.15■□□□□ 0.34
CPSF4-206ENST00000441580 RSPH6AQ9H0K4 717 aa17.15■□□□□ 0.34
CPSF4-206ENST00000441580 RRP7AQ9Y3A4 280 aaKnown RBP17.15■□□□□ 0.34
CPSF4-206ENST00000441580 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
CPSF4-206ENST00000441580 PPM1GO15355 546 aaPredicted RBP17.14■□□□□ 0.33
CPSF4-206ENST00000441580 CT47B1P0C2W7 299 aaPredicted RBP17.14■□□□□ 0.33
CPSF4-206ENST00000441580 IL13P35225 146 aa17.14■□□□□ 0.33
CPSF4-206ENST00000441580 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.33
CPSF4-206ENST00000441580 SBNO1A3KN83 1393 aa17.14■□□□□ 0.33
CPSF4-206ENST00000441580 NEUROD2Q15784 382 aa17.13■□□□□ 0.33
CPSF4-206ENST00000441580 ZRANB1Q9UGI0 708 aa17.13■□□□□ 0.33
CPSF4-206ENST00000441580 DMRT2Q9Y5R5 561 aa17.13■□□□□ 0.33
CPSF4-206ENST00000441580 ARHGEF10O15013 1369 aa17.13■□□□□ 0.33
CPSF4-206ENST00000441580 FLT4P35916 1363 aa17.13■□□□□ 0.33
CPSF4-206ENST00000441580 RTL1A6NKG5 1358 aa17.12■□□□□ 0.33
CPSF4-206ENST00000441580 DCCP43146 1447 aa17.12■□□□□ 0.33
CPSF4-206ENST00000441580 PRKAR2BP31323 418 aa17.11■□□□□ 0.33
CPSF4-206ENST00000441580 CALD1Q05682 793 aaKnown RBP17.11■□□□□ 0.33
CPSF4-206ENST00000441580 LMOD3Q0VAK6 560 aa17.11■□□□□ 0.33
CPSF4-206ENST00000441580 EXOC6Q8TAG9 804 aa17.11■□□□□ 0.33
CPSF4-206ENST00000441580 TSHZ2Q9NRE2 1034 aa17.11■□□□□ 0.33
CPSF4-206ENST00000441580 PHRF1Q9P1Y6 1649 aaKnown RBP17.1■□□□□ 0.33
CPSF4-206ENST00000441580 RRS1Q15050 365 aaKnown RBP17.1■□□□□ 0.33
CPSF4-206ENST00000441580 PMFBP1Q8TBY8 1022 aa17.1■□□□□ 0.33
CPSF4-206ENST00000441580 NCOA3Q9Y6Q9 1424 aa17.1■□□□□ 0.33
CPSF4-206ENST00000441580 PHF8Q9UPP1 1060 aa17.09■□□□□ 0.33
CPSF4-206ENST00000441580 FANCIQ9NVI1 1328 aa17.08■□□□□ 0.32
CPSF4-206ENST00000441580 NFE2L2Q16236 605 aa17.08■□□□□ 0.32
CPSF4-206ENST00000441580 DLG5Q8TDM6 1919 aa17.08■□□□□ 0.32
CPSF4-206ENST00000441580 RIPK4P57078 832 aa17.07■□□□□ 0.32
CPSF4-206ENST00000441580 CRBNQ96SW2 442 aa17.07■□□□□ 0.32
CPSF4-206ENST00000441580 TRIM35Q9UPQ4 493 aa17.07■□□□□ 0.32
CPSF4-206ENST00000441580 NFAT5O94916 1531 aa17.06■□□□□ 0.32
CPSF4-206ENST00000441580 PLIN1O60240 522 aa17.06■□□□□ 0.32
CPSF4-206ENST00000441580 LTN1O94822 1766 aa17.06■□□□□ 0.32
CPSF4-206ENST00000441580 TRPM3Q9HCF6 1732 aaPredicted RBP17.06■□□□□ 0.32
CPSF4-206ENST00000441580 EIF4A2Q14240 407 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms