RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 UGGT1Q9NYU2 1555 aa16.62■□□□□ 0.25
ACTN1-204ENST00000438964 RNF17Q9BXT8 1623 aaKnown RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 NCOA3Q9Y6Q9 1424 aa16.62■□□□□ 0.25
ACTN1-204ENST00000438964 SKOR2Q2VWA4 1001 aaPredicted RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 NOL8Q76FK4 1167 aaKnown RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 SNX21Q969T3 373 aa16.62■□□□□ 0.25
ACTN1-204ENST00000438964 PHF23Q9BUL5 403 aaPredicted RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 NSFL1CQ9UNZ2 370 aaKnown RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 MRC2Q9UBG0 1479 aa16.62■□□□□ 0.25
ACTN1-204ENST00000438964 CALD1Q05682 793 aaKnown RBP16.62■□□□□ 0.25
ACTN1-204ENST00000438964 IQGAP1P46940 1657 aa16.61■□□□□ 0.25
ACTN1-204ENST00000438964 PODXL2Q9NZ53 605 aa16.61■□□□□ 0.25
ACTN1-204ENST00000438964 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.61■□□□□ 0.25
ACTN1-204ENST00000438964 NPC1L1Q9UHC9 1359 aa16.61■□□□□ 0.25
ACTN1-204ENST00000438964 ARHGEF5Q12774 1597 aa16.61■□□□□ 0.25
ACTN1-204ENST00000438964 SYCE3A1L190 88 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 KIF3BO15066 747 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 RSPH4AQ5TD94 716 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 C16orf71Q8IYS4 520 aaPredicted RBP16.6■□□□□ 0.25
ACTN1-204ENST00000438964 PPP1R9BQ96SB3 815 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 CABP2Q9NPB3 220 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.6■□□□□ 0.25
ACTN1-204ENST00000438964 TRIM35Q9UPQ4 493 aa16.6■□□□□ 0.25
ACTN1-204ENST00000438964 KDM5AP29375 1690 aaKnown RBP16.6■□□□□ 0.25
ACTN1-204ENST00000438964 TMPOP42166 694 aaKnown RBP16.59■□□□□ 0.25
ACTN1-204ENST00000438964 NGEFQ8N5V2 710 aa16.59■□□□□ 0.25
ACTN1-204ENST00000438964 PRDM4Q9UKN5 801 aa16.59■□□□□ 0.25
ACTN1-204ENST00000438964 PLXNC1O60486 1568 aa16.59■□□□□ 0.25
ACTN1-204ENST00000438964 CEP152O94986 1710 aa16.59■□□□□ 0.25
ACTN1-204ENST00000438964 KLHL40Q2TBA0 621 aa16.59■□□□□ 0.25
ACTN1-204ENST00000438964 ISY1Q9ULR0 285 aaKnown RBP16.59■□□□□ 0.25
ACTN1-204ENST00000438964 ZNF830Q96NB3 372 aaPredicted RBP16.58■□□□□ 0.24
ACTN1-204ENST00000438964 AAMPQ13685 434 aa16.58■□□□□ 0.24
ACTN1-204ENST00000438964 CIZ1Q9ULV3 898 aaPredicted RBP16.58■□□□□ 0.24
ACTN1-204ENST00000438964 IFT140Q96RY7 1462 aa16.57■□□□□ 0.24
ACTN1-204ENST00000438964 UNC13BO14795 1591 aa16.57■□□□□ 0.24
ACTN1-204ENST00000438964 OTUD7AQ8TE49 926 aaPredicted RBP16.57■□□□□ 0.24
ACTN1-204ENST00000438964 TTC37Q6PGP7 1564 aa16.57■□□□□ 0.24
ACTN1-204ENST00000438964 C17orf53Q8N3J3 647 aaPredicted RBP16.56■□□□□ 0.24
ACTN1-204ENST00000438964 GPT2Q8TD30 523 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 IQSEC2Q5JU85 1478 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 IQGAP3Q86VI3 1631 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 LMBRD1Q9NUN5 540 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 ATP10AO60312 1499 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 SHPRHQ149N8 1683 aa16.56■□□□□ 0.24
ACTN1-204ENST00000438964 DTNBO60941 627 aa16.55■□□□□ 0.24
ACTN1-204ENST00000438964 BMP2KLQ5H9B9 411 aa16.55■□□□□ 0.24
ACTN1-204ENST00000438964 DNTTIP2Q5QJE6 756 aaKnown RBP16.55■□□□□ 0.24
ACTN1-204ENST00000438964 TSPYL6Q8N831 410 aa16.55■□□□□ 0.24
ACTN1-204ENST00000438964 MAST1Q9Y2H9 1570 aa16.55■□□□□ 0.24
ACTN1-204ENST00000438964 TRAPPC8Q9Y2L5 1435 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 GSPT1P15170 499 aaKnown RBP16.54■□□□□ 0.24
ACTN1-204ENST00000438964 SIRT2Q8IXJ6 389 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 STK26Q9P289 416 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
ACTN1-204ENST00000438964 PTPRTO14522 1441 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 CD109Q6YHK3 1445 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 SPAG9O60271 1321 aaKnown RBP16.54■□□□□ 0.24
ACTN1-204ENST00000438964 TMEM63CQ9P1W3 806 aa16.54■□□□□ 0.24
ACTN1-204ENST00000438964 SMARCA5O60264 1052 aaPredicted RBP16.53■□□□□ 0.24
ACTN1-204ENST00000438964 GDPD2Q9HCC8 539 aa16.53■□□□□ 0.24
ACTN1-204ENST00000438964 HMOX1P09601 288 aa16.52■□□□□ 0.24
ACTN1-204ENST00000438964 CLTCL1P53675 1640 aa16.52■□□□□ 0.24
ACTN1-204ENST00000438964 ZMYM3Q14202 1370 aa16.52■□□□□ 0.24
ACTN1-204ENST00000438964 KIF16BQ96L93 1317 aa16.52■□□□□ 0.24
ACTN1-204ENST00000438964 NOL7Q9UMY1 257 aaKnown RBP16.52■□□□□ 0.23
ACTN1-204ENST00000438964 PPIP5K1Q6PFW1 1433 aa16.52■□□□□ 0.23
ACTN1-204ENST00000438964 CCDC27Q2M243 656 aa16.51■□□□□ 0.23
ACTN1-204ENST00000438964 BCL11BQ9C0K0 894 aaPredicted RBP16.51■□□□□ 0.23
ACTN1-204ENST00000438964 SCAPERQ9BY12 1400 aa16.51■□□□□ 0.23
ACTN1-204ENST00000438964 PREX2Q70Z35 1606 aa16.51■□□□□ 0.23
ACTN1-204ENST00000438964 CFAP65Q6ZU64 1925 aaKnown RBP16.5■□□□□ 0.23
ACTN1-204ENST00000438964 ZNF518AQ6AHZ1 1483 aa16.5■□□□□ 0.23
ACTN1-204ENST00000438964 IGSF3O75054 1194 aa16.5■□□□□ 0.23
ACTN1-204ENST00000438964 IPO8O15397 1037 aaKnown RBP16.49■□□□□ 0.23
ACTN1-204ENST00000438964 ZBTB7BO15156 539 aaPredicted RBP16.49■□□□□ 0.23
ACTN1-204ENST00000438964 PLCB2Q00722 1185 aa16.49■□□□□ 0.23
ACTN1-204ENST00000438964 TSHZ3Q63HK5 1081 aa16.49■□□□□ 0.23
ACTN1-204ENST00000438964 PLEKHF1Q96S99 279 aa16.49■□□□□ 0.23
ACTN1-204ENST00000438964 ZKSCAN5Q9Y2L8 839 aa16.49■□□□□ 0.23
ACTN1-204ENST00000438964 ZDHHC9Q9Y397 364 aa16.49■□□□□ 0.23
ACTN1-204ENST00000438964 CDC45O75419 566 aa16.48■□□□□ 0.23
ACTN1-204ENST00000438964 CBX1P83916 185 aa16.48■□□□□ 0.23
ACTN1-204ENST00000438964 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.48■□□□□ 0.23
ACTN1-204ENST00000438964 DUOX2Q9NRD8 1548 aa16.48■□□□□ 0.23
ACTN1-204ENST00000438964 ZNF445P59923 1031 aa16.48■□□□□ 0.23
ACTN1-204ENST00000438964 SRPK2P78362 688 aaKnown RBP16.47■□□□□ 0.23
ACTN1-204ENST00000438964 EFCAB2Q5VUJ9 269 aa16.47■□□□□ 0.23
ACTN1-204ENST00000438964 NOS1P29475 1434 aa16.47■□□□□ 0.23
ACTN1-204ENST00000438964 SPHKAPQ2M3C7 1700 aa16.46■□□□□ 0.23
ACTN1-204ENST00000438964 PRKAR2BP31323 418 aa16.45■□□□□ 0.22
ACTN1-204ENST00000438964 PLEKHM2Q8IWE5 1019 aa16.45■□□□□ 0.22
ACTN1-204ENST00000438964 ZNF500O60304 480 aaPredicted RBP16.44■□□□□ 0.22
ACTN1-204ENST00000438964 DCTN1Q14203 1278 aa16.44■□□□□ 0.22
ACTN1-204ENST00000438964 PHACTR3Q96KR7 559 aa16.44■□□□□ 0.22
ACTN1-204ENST00000438964 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.44■□□□□ 0.22
ACTN1-204ENST00000438964 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.44■□□□□ 0.222e-7■■■■□ 20.7
ACTN1-204ENST00000438964 PDLIM2Q96JY6 352 aa16.44■□□□□ 0.22
ACTN1-204ENST00000438964 TTC12Q9H892 705 aaPredicted RBP16.44■□□□□ 0.22
ACTN1-204ENST00000438964 SPDYE4A6NLX3 237 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms