RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 ABCC11Q96J66 1382 aa8.18□□□□□ -1.1
CSDE1-205ENST00000438362 DUOX2Q9NRD8 1548 aa8.18□□□□□ -1.1
CSDE1-205ENST00000438362 TRIM27P14373 513 aa8.18□□□□□ -1.1
CSDE1-205ENST00000438362 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.18□□□□□ -1.1
CSDE1-205ENST00000438362 ARID3AQ99856 593 aa8.18□□□□□ -1.1
CSDE1-205ENST00000438362 TSPYL4Q9UJ04 414 aa8.18□□□□□ -1.1
CSDE1-205ENST00000438362 HTATSF1O43719 755 aaKnown RBP8.17□□□□□ -1.1
CSDE1-205ENST00000438362 EIF2AK4Q9P2K8 1649 aaKnown RBP8.17□□□□□ -1.1
CSDE1-205ENST00000438362 A2MP01023 1474 aa8.17□□□□□ -1.1
CSDE1-205ENST00000438362 KDM2BQ8NHM5 1336 aa8.17□□□□□ -1.1
CSDE1-205ENST00000438362 CAVIN1Q6NZI2 390 aaKnown RBP8.17□□□□□ -1.1
CSDE1-205ENST00000438362 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-205ENST00000438362 NFE2L2Q16236 605 aa8.16□□□□□ -1.1
CSDE1-205ENST00000438362 ALDH1L2Q3SY69 923 aa8.16□□□□□ -1.1
CSDE1-205ENST00000438362 C14orf93Q9H972 538 aaKnown RBP8.16□□□□□ -1.1
CSDE1-205ENST00000438362 NECTIN2Q92692 538 aa8.16□□□□□ -1.1
CSDE1-205ENST00000438362 SPINK5Q9NQ38 1064 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-205ENST00000438362 POLR3AO14802 1390 aaPredicted RBP8.16□□□□□ -1.1
CSDE1-205ENST00000438362 NOS1P29475 1434 aa8.16□□□□□ -1.1
CSDE1-205ENST00000438362 VSIG10Q8N0Z9 540 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 DIAPH3Q9NSV4 1193 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 PLCH2O75038 1416 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 BLMP54132 1417 aaPredicted RBP8.15□□□□□ -1.1
CSDE1-205ENST00000438362 NEK4P51957 841 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 ZMYM4Q5VZL5 1548 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 NSD2O96028 1365 aa8.15□□□□□ -1.1
CSDE1-205ENST00000438362 ESPNB1AK53 854 aa8.15□□□□□ -1.11
CSDE1-205ENST00000438362 CCDC173Q0VFZ6 552 aa8.15□□□□□ -1.11
CSDE1-205ENST00000438362 RUFY2Q8WXA3 655 aa8.15□□□□□ -1.11
CSDE1-205ENST00000438362 TAOK2Q9UL54 1235 aa8.15□□□□□ -1.11
CSDE1-205ENST00000438362 ADGRL1O94910 1474 aa8.15□□□□□ -1.11
CSDE1-205ENST00000438362 RAPGEF3O95398 923 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 MBD3O95983 291 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 CCDC27Q2M243 656 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 THUMPD2Q9BTF0 503 aaKnown RBP8.14□□□□□ -1.11
CSDE1-205ENST00000438362 CARD14Q9BXL6 1004 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 CWC22Q9HCG8 908 aaKnown RBP8.14□□□□□ -1.11
CSDE1-205ENST00000438362 NPC1L1Q9UHC9 1359 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 PRPF40AO75400 957 aaKnown RBP8.14□□□□□ -1.11
CSDE1-205ENST00000438362 GNAI3P08754 354 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 MCM2P49736 904 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 EIF2S2P20042 333 aaKnown RBP8.14□□□□□ -1.11
CSDE1-205ENST00000438362 SULT6B1Q6IMI4 303 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 PBRM1Q86U86 1689 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 TEFQ10587 303 aa8.14□□□□□ -1.11
CSDE1-205ENST00000438362 HDAC1Q13547 482 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-205ENST00000438362 RLBP1P12271 317 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 KCNA4P22459 653 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 RPAP2Q8IXW5 612 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-205ENST00000438362 ERC2O15083 957 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 NPM3O75607 178 aaKnown RBP8.13□□□□□ -1.11
CSDE1-205ENST00000438362 SLC4A2P04920 1241 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 ZKSCAN1P17029 563 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-205ENST00000438362 KDM5CP41229 1560 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 IL16Q14005 1332 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 CYB5RLQ6IPT4 315 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 RNF214Q8ND24 703 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 TNNQ9UQP3 1299 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 RTEL1-TNFRSF6BF6WH68 1400 aa8.13□□□□□ -1.11
CSDE1-205ENST00000438362 KDM5BQ9UGL1 1544 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 TRAPPC8Q9Y2L5 1435 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 A0A0G2JS52 829 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 SEC24BO95487 1268 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 HSP90B1P14625 803 aaKnown RBP8.12□□□□□ -1.11
CSDE1-205ENST00000438362 BMP2KLQ5H9B9 411 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 FAM13BQ9NYF5 915 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 SMC3Q9UQE7 1217 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 GNAI2P04899 355 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 UBTFL1P0CB47 393 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-205ENST00000438362 TXNDC2Q86VQ3 553 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 ZNF692Q9BU19 519 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-205ENST00000438362 IFT57Q9NWB7 429 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 C9orf78Q9NZ63 289 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-205ENST00000438362 FANCAO15360 1455 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 HSP90AB4PQ58FF6 505 aa8.12□□□□□ -1.11
CSDE1-205ENST00000438362 TNPO1Q92973 898 aaKnown RBP8.12□□□□□ -1.11
CSDE1-205ENST00000438362 ADGBQ8N7X0 1667 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 TPM2P07951 284 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 CCT4P50991 539 aaKnown RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 IDI1Q13907 227 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 RRS1Q15050 365 aaKnown RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 CCDC30Q5VVM6 783 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 GAS2L2Q8NHY3 880 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 CCDC39Q9UFE4 941 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 R3HCC1Q9Y3T6 440 aaKnown RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 IFIT2P09913 472 aaKnown RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 DENND4BO75064 1496 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 TARBP1Q13395 1621 aaKnown RBP8.11□□□□□ -1.11
CSDE1-205ENST00000438362 KIF3AQ9Y496 699 aa8.11□□□□□ -1.11
CSDE1-205ENST00000438362 SURF6O75683 361 aaKnown RBP8.1□□□□□ -1.11
CSDE1-205ENST00000438362 FAM69CQ0P6D2 419 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 ANKRD36BQ8N2N9 1353 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 VPS37CA5D8V6 355 aaPredicted RBP8.1□□□□□ -1.11
CSDE1-205ENST00000438362 EIF4G3O43432 1585 aaKnown RBP8.1□□□□□ -1.11
CSDE1-205ENST00000438362 CCDC61Q9Y6R9 512 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 MBD5Q9P267 1494 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 NUCB1Q02818 461 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 TBC1D9Q6ZT07 1266 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 CHMP3Q9Y3E7 222 aa8.1□□□□□ -1.11
CSDE1-205ENST00000438362 CSB-PGBD3P0DP91 1061 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms