RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NCBP3Q53F19 620 aaKnown RBP33.8■■■■□ 3
CPNE1-216ENST00000437340 NUDT16Q96DE0 195 aaKnown RBP33.8■■■■□ 3
CPNE1-216ENST00000437340 CCDC61Q9Y6R9 512 aa33.8■■■■□ 3
CPNE1-216ENST00000437340 B4GALNT3Q6L9W6 998 aa33.79■■■■□ 3
CPNE1-216ENST00000437340 EDC4Q6P2E9 1401 aaKnown RBP33.79■■■■□ 3
CPNE1-216ENST00000437340 NWD1Q149M9 1564 aa33.78■■■■□ 3
CPNE1-216ENST00000437340 IQSEC2Q5JU85 1478 aa33.77■■■■□ 3
CPNE1-216ENST00000437340 CDC42BPGQ6DT37 1551 aa33.76■■■■□ 3
CPNE1-216ENST00000437340 E9PSI1 815 aa33.76■■■■□ 3
CPNE1-216ENST00000437340 COL3A1P02461 1466 aaPredicted RBP33.75■■■□□ 2.99
CPNE1-216ENST00000437340 PNPLA6Q8IY17 1366 aa33.72■■■□□ 2.99
CPNE1-216ENST00000437340 NALCNQ8IZF0 1738 aa33.71■■■□□ 2.99
CPNE1-216ENST00000437340 CCDC27Q2M243 656 aa33.7■■■□□ 2.98
CPNE1-216ENST00000437340 WWC1Q8IX03 1113 aa33.7■■■□□ 2.98
CPNE1-216ENST00000437340 ZNF692Q9BU19 519 aaPredicted RBP33.7■■■□□ 2.98
CPNE1-216ENST00000437340 PHF23Q9BUL5 403 aaPredicted RBP33.7■■■□□ 2.98
CPNE1-216ENST00000437340 TCP11L2Q8N4U5 519 aa33.69■■■□□ 2.98
CPNE1-216ENST00000437340 NKTRP30414 1462 aaKnown RBP33.68■■■□□ 2.98
CPNE1-216ENST00000437340 MON2Q7Z3U7 1717 aa33.68■■■□□ 2.98
CPNE1-216ENST00000437340 U2AF1L5P0DN76 240 aaPredicted RBP33.68■■■□□ 2.98
CPNE1-216ENST00000437340 U2AF1Q01081 240 aaKnown RBP eCLIP33.68■■■□□ 2.986e-11■■□□□ 12.7
CPNE1-216ENST00000437340 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.68■■■□□ 2.98
CPNE1-216ENST00000437340 CCDC136Q96JN2 1154 aa33.68■■■□□ 2.98
CPNE1-216ENST00000437340 STRCP1A6NGW2 1772 aa33.67■■■□□ 2.98
CPNE1-216ENST00000437340 PRR36Q9H6K5 1346 aa33.66■■■□□ 2.98
CPNE1-216ENST00000437340 TOPAZ1Q8N9V7 1692 aa33.66■■■□□ 2.98
CPNE1-216ENST00000437340 SPINK5Q9NQ38 1064 aaPredicted RBP33.65■■■□□ 2.98
CPNE1-216ENST00000437340 AKAP12Q02952 1782 aa33.65■■■□□ 2.98
CPNE1-216ENST00000437340 WDR63Q8IWG1 891 aa33.63■■■□□ 2.97
CPNE1-216ENST00000437340 ITSN1Q15811 1721 aa33.62■■■□□ 2.97
CPNE1-216ENST00000437340 RGPD8O14715 1765 aaPredicted RBP33.61■■■□□ 2.97
CPNE1-216ENST00000437340 EXOC6Q8TAG9 804 aa33.61■■■□□ 2.97
CPNE1-216ENST00000437340 FMN2Q9NZ56 1722 aa33.61■■■□□ 2.97
CPNE1-216ENST00000437340 AATKQ6ZMQ8 1374 aa33.6■■■□□ 2.97
CPNE1-216ENST00000437340 DIAPH1O60610 1272 aaKnown RBP33.6■■■□□ 2.97
CPNE1-216ENST00000437340 PLEKHG3A1L390 1219 aa33.6■■■□□ 2.97
CPNE1-216ENST00000437340 GOLGA6L2Q8N9W4 650 aaPredicted RBP33.59■■■□□ 2.97
CPNE1-216ENST00000437340 RBM33Q96EV2 1170 aaKnown RBP33.58■■■□□ 2.97
CPNE1-216ENST00000437340 PNNQ9H307 717 aaKnown RBP33.58■■■□□ 2.97
CPNE1-216ENST00000437340 POLKQ9UBT6 870 aa33.58■■■□□ 2.97
CPNE1-216ENST00000437340 DMRT2Q9Y5R5 561 aa33.58■■■□□ 2.97
CPNE1-216ENST00000437340 U2SURPO15042 1029 aaKnown RBP33.57■■■□□ 2.96
CPNE1-216ENST00000437340 PLEKHF1Q96S99 279 aa33.57■■■□□ 2.96
CPNE1-216ENST00000437340 NME9Q86XW9 330 aa33.56■■■□□ 2.96
CPNE1-216ENST00000437340 PLIN1O60240 522 aa33.55■■■□□ 2.96
CPNE1-216ENST00000437340 RRP7AQ9Y3A4 280 aaKnown RBP33.55■■■□□ 2.96
CPNE1-216ENST00000437340 ADGRL3Q9HAR2 1447 aa33.55■■■□□ 2.96
CPNE1-216ENST00000437340 COG3Q96JB2 828 aa33.55■■■□□ 2.96
CPNE1-216ENST00000437340 NEUROD2Q15784 382 aa33.54■■■□□ 2.96
CPNE1-216ENST00000437340 NUTM2FA1L443 756 aa33.53■■■□□ 2.96
CPNE1-216ENST00000437340 CDK12Q9NYV4 1490 aaPredicted RBP33.5■■■□□ 2.95
CPNE1-216ENST00000437340 NRKQ7Z2Y5 1582 aa33.5■■■□□ 2.95
CPNE1-216ENST00000437340 ACEP12821 1306 aa33.5■■■□□ 2.95
CPNE1-216ENST00000437340 MAPK8IP3Q9UPT6 1336 aa33.49■■■□□ 2.95
CPNE1-216ENST00000437340 MAP2P11137 1827 aaKnown RBP33.48■■■□□ 2.95
CPNE1-216ENST00000437340 FCHSD2O94868 740 aa33.48■■■□□ 2.95
CPNE1-216ENST00000437340 PROSER2Q86WR7 435 aaPredicted RBP33.47■■■□□ 2.95
CPNE1-216ENST00000437340 USP6P35125 1406 aa33.47■■■□□ 2.95
CPNE1-216ENST00000437340 TTC21BQ7Z4L5 1316 aa33.47■■■□□ 2.95
CPNE1-216ENST00000437340 CRBNQ96SW2 442 aa33.47■■■□□ 2.95
CPNE1-216ENST00000437340 ANKARQ7Z5J8 1434 aa33.47■■■□□ 2.95
CPNE1-216ENST00000437340 TMPOP42166 694 aaKnown RBP33.45■■■□□ 2.95
CPNE1-216ENST00000437340 MYH16Q9H6N6 1097 aa33.44■■■□□ 2.94
CPNE1-216ENST00000437340 ZRANB1Q9UGI0 708 aa33.44■■■□□ 2.94
CPNE1-216ENST00000437340 XIRP1Q702N8 1843 aaKnown RBP33.43■■■□□ 2.94
CPNE1-216ENST00000437340 PPM1GO15355 546 aaPredicted RBP33.42■■■□□ 2.94
CPNE1-216ENST00000437340 C14orf37Q86TY3 774 aa33.42■■■□□ 2.94
CPNE1-216ENST00000437340 RBM19Q9Y4C8 960 aaKnown RBP33.42■■■□□ 2.94
CPNE1-216ENST00000437340 EMILIN1Q9Y6C2 1016 aa33.42■■■□□ 2.94
CPNE1-216ENST00000437340 FBLN1P23142 703 aa33.41■■■□□ 2.94
CPNE1-216ENST00000437340 SSH2Q76I76 1423 aa33.41■■■□□ 2.94
CPNE1-216ENST00000437340 C20orf194Q5TEA3 1177 aa33.4■■■□□ 2.94
CPNE1-216ENST00000437340 OVOS2A0A0J9YW53 1432 aa33.4■■■□□ 2.94
CPNE1-216ENST00000437340 OVOS2Q6IE36 1432 aa33.4■■■□□ 2.94
CPNE1-216ENST00000437340 TMEM94Q12767 1356 aa33.39■■■□□ 2.94
CPNE1-216ENST00000437340 IL13P35225 146 aa33.38■■■□□ 2.93
CPNE1-216ENST00000437340 RSPH6AQ9H0K4 717 aa33.38■■■□□ 2.93
CPNE1-216ENST00000437340 IL16Q14005 1332 aa33.38■■■□□ 2.93
CPNE1-216ENST00000437340 TTC21AQ8NDW8 1320 aa33.38■■■□□ 2.93
CPNE1-216ENST00000437340 LRRC7Q96NW7 1537 aa33.37■■■□□ 2.93
CPNE1-216ENST00000437340 TRIM35Q9UPQ4 493 aa33.37■■■□□ 2.93
CPNE1-216ENST00000437340 BCAR3O75815 825 aa33.35■■■□□ 2.93
CPNE1-216ENST00000437340 NEFMP07197 916 aa33.35■■■□□ 2.93
CPNE1-216ENST00000437340 ZNF335Q9H4Z2 1342 aaPredicted RBP33.35■■■□□ 2.93
CPNE1-216ENST00000437340 CT47B1P0C2W7 299 aaPredicted RBP33.34■■■□□ 2.93
CPNE1-216ENST00000437340 PMFBP1Q8TBY8 1022 aa33.34■■■□□ 2.93
CPNE1-216ENST00000437340 NCOA3Q9Y6Q9 1424 aa33.33■■■□□ 2.93
CPNE1-216ENST00000437340 USP31Q70CQ4 1352 aa33.33■■■□□ 2.93
CPNE1-216ENST00000437340 RIPK4P57078 832 aa33.32■■■□□ 2.92
CPNE1-216ENST00000437340 PRKAR2BP31323 418 aa33.31■■■□□ 2.92
CPNE1-216ENST00000437340 PDE3AQ14432 1141 aa33.31■■■□□ 2.92
CPNE1-216ENST00000437340 RRS1Q15050 365 aaKnown RBP33.31■■■□□ 2.92
CPNE1-216ENST00000437340 RARSP54136 660 aaKnown RBP33.3■■■□□ 2.92
CPNE1-216ENST00000437340 C19orf44Q9H6X5 657 aa33.29■■■□□ 2.92
CPNE1-216ENST00000437340 NGDNQ8NEJ9 315 aaKnown RBP33.28■■■□□ 2.92
CPNE1-216ENST00000437340 DCCP43146 1447 aa33.26■■■□□ 2.91
CPNE1-216ENST00000437340 FANCIQ9NVI1 1328 aa33.25■■■□□ 2.91
CPNE1-216ENST00000437340 NFE2L2Q16236 605 aa33.24■■■□□ 2.91
CPNE1-216ENST00000437340 HMOX1P09601 288 aa33.22■■■□□ 2.91
CPNE1-216ENST00000437340 PHF8Q9UPP1 1060 aa33.22■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms