RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.25■■■□□ 2.59
CPSF4-204ENST00000436336 TTC21BQ7Z4L5 1316 aa31.24■■■□□ 2.59
CPSF4-204ENST00000436336 TTC21AQ8NDW8 1320 aa31.22■■■□□ 2.59
CPSF4-204ENST00000436336 SLAIN2Q9P270 581 aa31.21■■■□□ 2.59
CPSF4-204ENST00000436336 MORC1Q86VD1 984 aa31.21■■■□□ 2.59
CPSF4-204ENST00000436336 GGNBP2Q9H3C7 697 aa31.21■■■□□ 2.59
CPSF4-204ENST00000436336 PSME1Q06323 249 aa31.18■■■□□ 2.58
CPSF4-204ENST00000436336 PIK3C2AO00443 1686 aa31.18■■■□□ 2.58
CPSF4-204ENST00000436336 TRPM3Q9HCF6 1732 aaPredicted RBP31.18■■■□□ 2.58
CPSF4-204ENST00000436336 FOXO3O43524 673 aa31.17■■■□□ 2.58
CPSF4-204ENST00000436336 NME9Q86XW9 330 aa31.17■■■□□ 2.58
CPSF4-204ENST00000436336 USP54Q70EL1 1684 aa31.16■■■□□ 2.58
CPSF4-204ENST00000436336 NLRP13Q86W25 1043 aa31.15■■■□□ 2.58
CPSF4-204ENST00000436336 PPP2R1AP30153 589 aa31.14■■■□□ 2.58
CPSF4-204ENST00000436336 BRINP3Q76B58 766 aa31.14■■■□□ 2.58
CPSF4-204ENST00000436336 NPHP3Q7Z494 1330 aa31.12■■■□□ 2.57
CPSF4-204ENST00000436336 IQSEC2Q5JU85 1478 aa31.11■■■□□ 2.57
CPSF4-204ENST00000436336 COG3Q96JB2 828 aa31.11■■■□□ 2.57
CPSF4-204ENST00000436336 OVOS2A0A0J9YW53 1432 aa31.11■■■□□ 2.57
CPSF4-204ENST00000436336 OVOS2Q6IE36 1432 aa31.11■■■□□ 2.57
CPSF4-204ENST00000436336 MARF1Q9Y4F3 1742 aaKnown RBP31.11■■■□□ 2.57
CPSF4-204ENST00000436336 USP31Q70CQ4 1352 aa31.1■■■□□ 2.57
CPSF4-204ENST00000436336 NHSL1Q5SYE7 1610 aa31.1■■■□□ 2.57
CPSF4-204ENST00000436336 KRT28Q7Z3Y7 464 aa31.1■■■□□ 2.57
CPSF4-204ENST00000436336 SCAF1Q9H7N4 1312 aaKnown RBP31.09■■■□□ 2.57
CPSF4-204ENST00000436336 PAK3O75914 559 aaPredicted RBP31.09■■■□□ 2.57
CPSF4-204ENST00000436336 CCDC184Q52MB2 194 aa31.09■■■□□ 2.57
CPSF4-204ENST00000436336 MRS2Q9HD23 443 aa31.09■■■□□ 2.57
CPSF4-204ENST00000436336 MAP2P11137 1827 aaKnown RBP31.09■■■□□ 2.57
CPSF4-204ENST00000436336 ZRANB1Q9UGI0 708 aa31.08■■■□□ 2.57
CPSF4-204ENST00000436336 ALS2Q96Q42 1657 aa31.08■■■□□ 2.57
CPSF4-204ENST00000436336 ROBO1Q9Y6N7 1651 aa31.07■■■□□ 2.56
CPSF4-204ENST00000436336 TNNT2P45379 298 aaPredicted RBP31.07■■■□□ 2.56
CPSF4-204ENST00000436336 PXDNQ92626 1479 aa31.06■■■□□ 2.56
CPSF4-204ENST00000436336 XPCQ01831 940 aaPredicted RBP31.05■■■□□ 2.56
CPSF4-204ENST00000436336 ABTB2Q8N961 1025 aa31.05■■■□□ 2.56
CPSF4-204ENST00000436336 SBNO1A3KN83 1393 aa31.03■■■□□ 2.56
CPSF4-204ENST00000436336 DDX17Q92841 729 aaKnown RBP31.02■■■□□ 2.56
CPSF4-204ENST00000436336 NLRP6P59044 892 aa31.01■■■□□ 2.56
CPSF4-204ENST00000436336 AATKQ6ZMQ8 1374 aa31.01■■■□□ 2.56
CPSF4-204ENST00000436336 TOM1O60784 492 aa30.99■■■□□ 2.55
CPSF4-204ENST00000436336 SOS2Q07890 1332 aaPredicted RBP30.97■■■□□ 2.55
CPSF4-204ENST00000436336 TNS3Q68CZ2 1445 aa30.97■■■□□ 2.55
CPSF4-204ENST00000436336 AHDC1Q5TGY3 1603 aaPredicted RBP30.96■■■□□ 2.55
CPSF4-204ENST00000436336 MTHFSP49914 203 aa30.95■■■□□ 2.55
CPSF4-204ENST00000436336 CERKQ8TCT0 537 aa30.95■■■□□ 2.55
CPSF4-204ENST00000436336 NUTM2GQ5VZR2 741 aa30.95■■■□□ 2.54
CPSF4-204ENST00000436336 SMG6Q86US8 1419 aaKnown RBP30.94■■■□□ 2.54
CPSF4-204ENST00000436336 SPATA31A3Q5VYP0 1347 aa30.92■■■□□ 2.54
CPSF4-204ENST00000436336 SLIT3O75094 1523 aa30.92■■■□□ 2.54
CPSF4-204ENST00000436336 LMOD2Q6P5Q4 547 aa30.91■■■□□ 2.54
CPSF4-204ENST00000436336 PNISRQ8TF01 805 aaKnown RBP30.91■■■□□ 2.54
CPSF4-204ENST00000436336 POLKQ9UBT6 870 aa30.91■■■□□ 2.54
CPSF4-204ENST00000436336 ARHGEF10O15013 1369 aa30.9■■■□□ 2.54
CPSF4-204ENST00000436336 FBLN1P23142 703 aa30.9■■■□□ 2.54
CPSF4-204ENST00000436336 CFAP53Q96M91 514 aa30.9■■■□□ 2.54
CPSF4-204ENST00000436336 CRYBG1Q9Y4K1 1723 aa30.89■■■□□ 2.54
CPSF4-204ENST00000436336 LTN1O94822 1766 aa30.89■■■□□ 2.54
CPSF4-204ENST00000436336 SHPRHQ149N8 1683 aa30.88■■■□□ 2.53
CPSF4-204ENST00000436336 PHRF1Q9P1Y6 1649 aaKnown RBP30.88■■■□□ 2.53
CPSF4-204ENST00000436336 UBAP1LF5GYI3 381 aa30.88■■■□□ 2.53
CPSF4-204ENST00000436336 USP19O94966 1318 aa30.87■■■□□ 2.53
CPSF4-204ENST00000436336 MED1Q15648 1581 aaPredicted RBP30.87■■■□□ 2.53
CPSF4-204ENST00000436336 NFAT5O94916 1531 aa30.87■■■□□ 2.53
CPSF4-204ENST00000436336 CDK12Q9NYV4 1490 aaPredicted RBP30.87■■■□□ 2.53
CPSF4-204ENST00000436336 PHLPP1O60346 1717 aa30.87■■■□□ 2.53
CPSF4-204ENST00000436336 KCNH5Q8NCM2 988 aa30.87■■■□□ 2.53
CPSF4-204ENST00000436336 FAM9BQ8IZU0 186 aa30.86■■■□□ 2.53
CPSF4-204ENST00000436336 PNPLA6Q8IY17 1366 aa30.86■■■□□ 2.53
CPSF4-204ENST00000436336 RRS1Q15050 365 aaKnown RBP30.85■■■□□ 2.53
CPSF4-204ENST00000436336 EMILIN1Q9Y6C2 1016 aa30.85■■■□□ 2.53
CPSF4-204ENST00000436336 PEAK1Q9H792 1746 aa30.85■■■□□ 2.53
CPSF4-204ENST00000436336 INSRP06213 1382 aa30.85■■■□□ 2.53
CPSF4-204ENST00000436336 COL3A1P02461 1466 aaPredicted RBP30.85■■■□□ 2.53
CPSF4-204ENST00000436336 SOX12O15370 315 aa30.84■■■□□ 2.53
CPSF4-204ENST00000436336 PPM1GO15355 546 aaPredicted RBP30.81■■■□□ 2.52
CPSF4-204ENST00000436336 PIP4K2BP78356 416 aa30.81■■■□□ 2.52
CPSF4-204ENST00000436336 MAP3K19Q56UN5 1328 aa30.8■■■□□ 2.52
CPSF4-204ENST00000436336 KIF24Q5T7B8 1368 aa30.8■■■□□ 2.52
CPSF4-204ENST00000436336 COL16A1Q07092 1604 aaPredicted RBP30.8■■■□□ 2.52
CPSF4-204ENST00000436336 GCP02774 474 aa30.8■■■□□ 2.52
CPSF4-204ENST00000436336 ABCA3Q99758 1704 aa30.8■■■□□ 2.52
CPSF4-204ENST00000436336 WDR43Q15061 677 aaKnown RBP eCLIP30.78■■■□□ 2.52
CPSF4-204ENST00000436336 LRRC59Q96AG4 307 aaKnown RBP30.78■■■□□ 2.52
CPSF4-204ENST00000436336 FLT4P35916 1363 aa30.76■■■□□ 2.51
CPSF4-204ENST00000436336 COL22A1Q8NFW1 1626 aaPredicted RBP30.75■■■□□ 2.51
CPSF4-204ENST00000436336 DIAPH1O60610 1272 aaKnown RBP30.74■■■□□ 2.51
CPSF4-204ENST00000436336 YTHDC1Q96MU7 727 aaKnown RBP30.74■■■□□ 2.51
CPSF4-204ENST00000436336 RTL1A6NKG5 1358 aa30.74■■■□□ 2.51
CPSF4-204ENST00000436336 AMPHP49418 695 aa30.73■■■□□ 2.51
CPSF4-204ENST00000436336 PLEKHG5O94827 1062 aa30.73■■■□□ 2.51
CPSF4-204ENST00000436336 NUDCQ9Y266 331 aa30.73■■■□□ 2.51
CPSF4-204ENST00000436336 ADAMTS8Q9UP79 889 aa30.71■■■□□ 2.51
CPSF4-204ENST00000436336 ARHGEF25Q86VW2 580 aa30.7■■■□□ 2.5
CPSF4-204ENST00000436336 CABLES1Q8TDN4 633 aa30.7■■■□□ 2.5
CPSF4-204ENST00000436336 HOXC9P31274 260 aa30.68■■■□□ 2.5
CPSF4-204ENST00000436336 HSP90AB2PQ58FF8 381 aa30.68■■■□□ 2.5
CPSF4-204ENST00000436336 BLMP54132 1417 aaPredicted RBP30.67■■■□□ 2.5
CPSF4-204ENST00000436336 RGPD5Q99666 1765 aa30.66■■■□□ 2.5
CPSF4-204ENST00000436336 IL13P35225 146 aa30.66■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms