RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 UNC5CLQ8IV45 518 aa15.52■□□□□ 0.08
LINC00539-203ENST00000434601 PHF8Q9UPP1 1060 aa15.52■□□□□ 0.08
LINC00539-203ENST00000434601 ADGRB2O60241 1585 aa15.52■□□□□ 0.07
LINC00539-203ENST00000434601 EVC2Q86UK5 1308 aa15.51■□□□□ 0.07
LINC00539-203ENST00000434601 HAP1P54257 671 aaPredicted RBP15.51■□□□□ 0.07
LINC00539-203ENST00000434601 SAFB2Q14151 953 aaKnown RBP eCLIP15.51■□□□□ 0.07
LINC00539-203ENST00000434601 USP32Q8NFA0 1604 aa15.5■□□□□ 0.07
LINC00539-203ENST00000434601 SLIT2O94813 1529 aa15.5■□□□□ 0.07
LINC00539-203ENST00000434601 ANP32CO43423 234 aa15.5■□□□□ 0.07
LINC00539-203ENST00000434601 SRCAPQ6ZRS2 3230 aa15.5■□□□□ 0.07
LINC00539-203ENST00000434601 TNS3Q68CZ2 1445 aa15.5■□□□□ 0.07
LINC00539-203ENST00000434601 SBNO1A3KN83 1393 aa15.49■□□□□ 0.07
LINC00539-203ENST00000434601 ARHGEF10O15013 1369 aa15.49■□□□□ 0.07
LINC00539-203ENST00000434601 NWD2Q9ULI1 1742 aa15.48■□□□□ 0.07
LINC00539-203ENST00000434601 MINK1Q8N4C8 1332 aaPredicted RBP15.48■□□□□ 0.07
LINC00539-203ENST00000434601 PUS7Q96PZ0 661 aaKnown RBP15.48■□□□□ 0.07
LINC00539-203ENST00000434601 ZRANB1Q9UGI0 708 aa15.48■□□□□ 0.07
LINC00539-203ENST00000434601 ANKARQ7Z5J8 1434 aa15.47■□□□□ 0.07
LINC00539-203ENST00000434601 GLI3P10071 1580 aa15.45■□□□□ 0.06
LINC00539-203ENST00000434601 BRWD3Q6RI45 1802 aa15.45■□□□□ 0.06
LINC00539-203ENST00000434601 LMOD2Q6P5Q4 547 aa15.45■□□□□ 0.06
LINC00539-203ENST00000434601 NINLQ9Y2I6 1382 aa15.45■□□□□ 0.06
LINC00539-203ENST00000434601 PLCH1Q4KWH8 1693 aa15.44■□□□□ 0.06
LINC00539-203ENST00000434601 ABCA3Q99758 1704 aa15.44■□□□□ 0.06
LINC00539-203ENST00000434601 VPS72Q15906 364 aa15.44■□□□□ 0.06
LINC00539-203ENST00000434601 PANK3Q9H999 370 aa15.44■□□□□ 0.06
LINC00539-203ENST00000434601 SRPK2P78362 688 aaKnown RBP15.43■□□□□ 0.06
LINC00539-203ENST00000434601 BLMP54132 1417 aaPredicted RBP15.43■□□□□ 0.06
LINC00539-203ENST00000434601 SF3B2Q13435 895 aaKnown RBP15.42■□□□□ 0.06
LINC00539-203ENST00000434601 PMFBP1Q8TBY8 1022 aa15.42■□□□□ 0.06
LINC00539-203ENST00000434601 CABLES1Q8TDN4 633 aa15.42■□□□□ 0.06
LINC00539-203ENST00000434601 CABP2Q9NPB3 220 aa15.42■□□□□ 0.06
LINC00539-203ENST00000434601 ONECUT3O60422 494 aaPredicted RBP15.41■□□□□ 0.06
LINC00539-203ENST00000434601 CDK19Q9BWU1 502 aa15.41■□□□□ 0.06
LINC00539-203ENST00000434601 CCDC9Q9Y3X0 531 aaKnown RBP15.41■□□□□ 0.06
LINC00539-203ENST00000434601 TOPAZ1Q8N9V7 1692 aa15.41■□□□□ 0.06
LINC00539-203ENST00000434601 WASLO00401 505 aaPredicted RBP15.4■□□□□ 0.06
LINC00539-203ENST00000434601 PER1O15534 1290 aaPredicted RBP15.4■□□□□ 0.06
LINC00539-203ENST00000434601 SEPT12Q8IYM1 358 aa15.4■□□□□ 0.06
LINC00539-203ENST00000434601 PRKRIP1Q9H875 184 aaPredicted RBP15.4■□□□□ 0.06
LINC00539-203ENST00000434601 TRPM3Q9HCF6 1732 aaPredicted RBP15.4■□□□□ 0.06
LINC00539-203ENST00000434601 ATP7BP35670 1465 aa15.4■□□□□ 0.06
LINC00539-203ENST00000434601 KTN1Q86UP2 1357 aaKnown RBP15.39■□□□□ 0.05
LINC00539-203ENST00000434601 ANKRD36BQ8N2N9 1353 aa15.39■□□□□ 0.05
LINC00539-203ENST00000434601 CCER2I3L3R5 266 aa15.39■□□□□ 0.05
LINC00539-203ENST00000434601 PLEKHG5O94827 1062 aa15.39■□□□□ 0.05
LINC00539-203ENST00000434601 TMC1Q8TDI8 760 aa15.39■□□□□ 0.05
LINC00539-203ENST00000434601 ALS2Q96Q42 1657 aa15.38■□□□□ 0.05
LINC00539-203ENST00000434601 ITSN1Q15811 1721 aa15.38■□□□□ 0.05
LINC00539-203ENST00000434601 FAM83GA6ND36 823 aa15.38■□□□□ 0.05
LINC00539-203ENST00000434601 COL14A1Q05707 1796 aaKnown RBP15.37■□□□□ 0.05
LINC00539-203ENST00000434601 KRT27Q7Z3Y8 459 aa15.37■□□□□ 0.05
LINC00539-203ENST00000434601 SLC12A5Q9H2X9 1139 aa15.37■□□□□ 0.05
LINC00539-203ENST00000434601 NSD3Q9BZ95 1437 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 CD163L1Q9NR16 1453 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 NGDNQ8NEJ9 315 aaKnown RBP15.36■□□□□ 0.05
LINC00539-203ENST00000434601 KNSTRNQ9Y448 316 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 NRAPQ86VF7 1730 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 A0A1W2PP64 1363 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 PARD3Q8TEW0 1356 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 NPC1L1Q9UHC9 1359 aa15.36■□□□□ 0.05
LINC00539-203ENST00000434601 BTG4Q9NY30 223 aa15.35■□□□□ 0.05
LINC00539-203ENST00000434601 PPIP5K1Q6PFW1 1433 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 AKAP12Q02952 1782 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 A0A0G2JS52 829 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 MYT1Q01538 1121 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 RALBP1Q15311 655 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 PRR36Q9H6K5 1346 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 MON2Q7Z3U7 1717 aa15.34■□□□□ 0.05
LINC00539-203ENST00000434601 PAK3O75914 559 aaPredicted RBP15.33■□□□□ 0.04
LINC00539-203ENST00000434601 AMER1Q5JTC6 1135 aaPredicted RBP15.33■□□□□ 0.04
LINC00539-203ENST00000434601 CARD14Q9BXL6 1004 aa15.33■□□□□ 0.04
LINC00539-203ENST00000434601 CNGB1Q14028 1251 aaPredicted RBP15.32■□□□□ 0.04
LINC00539-203ENST00000434601 DEFB132Q7Z7B7 95 aa15.32■□□□□ 0.04
LINC00539-203ENST00000434601 NUDT16Q96DE0 195 aaKnown RBP15.32■□□□□ 0.04
LINC00539-203ENST00000434601 TERF2IPQ9NYB0 399 aa15.32■□□□□ 0.04
LINC00539-203ENST00000434601 CRYBG1Q9Y4K1 1723 aa15.31■□□□□ 0.04
LINC00539-203ENST00000434601 KIF20BQ96Q89 1820 aa15.31■□□□□ 0.04
LINC00539-203ENST00000434601 BAG6P46379 1132 aa15.31■□□□□ 0.04
LINC00539-203ENST00000434601 FAM98CQ17RN3 349 aaKnown RBP15.31■□□□□ 0.04
LINC00539-203ENST00000434601 CC2D1BQ5T0F9 858 aaKnown RBP15.31■□□□□ 0.04
LINC00539-203ENST00000434601 ANKRD26Q9UPS8 1709 aa15.31■□□□□ 0.04
LINC00539-203ENST00000434601 HDGFL2Q7Z4V5 671 aaPredicted RBP15.3■□□□□ 0.04
LINC00539-203ENST00000434601 MYBBP1AQ9BQG0 1328 aaKnown RBP15.3■□□□□ 0.04
LINC00539-203ENST00000434601 PRDM11Q9NQV5 511 aa15.3■□□□□ 0.04
LINC00539-203ENST00000434601 CABP1Q9NZU7 370 aa15.3■□□□□ 0.04
LINC00539-203ENST00000434601 CCDC61Q9Y6R9 512 aa15.3■□□□□ 0.04
LINC00539-203ENST00000434601 RGPD1P0DJD0 1748 aa15.29■□□□□ 0.04
LINC00539-203ENST00000434601 NRKQ7Z2Y5 1582 aa15.29■□□□□ 0.04
LINC00539-203ENST00000434601 CPSF1Q10570 1443 aaKnown RBP15.29■□□□□ 0.04
LINC00539-203ENST00000434601 NSD2O96028 1365 aa15.29■□□□□ 0.04
LINC00539-203ENST00000434601 SPATA31A5Q5VU36 1347 aa15.29■□□□□ 0.04
LINC00539-203ENST00000434601 SPATA31A7Q8IWB4 1347 aa15.29■□□□□ 0.04
LINC00539-203ENST00000434601 CGNL1Q0VF96 1302 aa15.28■□□□□ 0.04
LINC00539-203ENST00000434601 EDC4Q6P2E9 1401 aaKnown RBP15.26■□□□□ 0.03
LINC00539-203ENST00000434601 BRD4O60885 1362 aaPredicted RBP15.26■□□□□ 0.03
LINC00539-203ENST00000434601 THSD7AQ9UPZ6 1657 aa15.25■□□□□ 0.03
LINC00539-203ENST00000434601 POLR3AO14802 1390 aaPredicted RBP15.25■□□□□ 0.03
LINC00539-203ENST00000434601 PHRF1Q9P1Y6 1649 aaKnown RBP15.25■□□□□ 0.03
LINC00539-203ENST00000434601 MRS2Q9HD23 443 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms