RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 PDZRN3Q9UPQ7 1066 aa9.26□□□□□ -0.93
COL28A1-202ENST00000430711 FER1L4A9Z1Z3 1794 aa9.26□□□□□ -0.93
COL28A1-202ENST00000430711 ATXN8OSP0DMR3 200 aa9.26□□□□□ -0.93
COL28A1-202ENST00000430711 STK26Q9P289 416 aa9.26□□□□□ -0.93
COL28A1-202ENST00000430711 NEURL4Q96JN8 1562 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 RUNDC1Q96C34 613 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 GGNBP2Q9H3C7 697 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 USP35Q9P2H5 1018 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 POGZQ7Z3K3 1410 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 SETBP1Q9Y6X0 1596 aa9.25□□□□□ -0.93
COL28A1-202ENST00000430711 SBNO2Q9Y2G9 1366 aa9.24□□□□□ -0.93
COL28A1-202ENST00000430711 PDE3AQ14432 1141 aa9.24□□□□□ -0.93
COL28A1-202ENST00000430711 SAMD1Q6SPF0 538 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-202ENST00000430711 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-202ENST00000430711 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
COL28A1-202ENST00000430711 CGNL1Q0VF96 1302 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 A0A1W2PP64 1363 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 ABCC3O15438 1527 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 NEXMIFQ5QGS0 1516 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 LMTK2Q8IWU2 1503 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 ADGRB2O60241 1585 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 NEO1Q92859 1461 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 ARXQ96QS3 562 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 TRIM35Q9UPQ4 493 aa9.23□□□□□ -0.93
COL28A1-202ENST00000430711 EXOSC9Q06265 439 aaKnown RBP9.22□□□□□ -0.93
COL28A1-202ENST00000430711 COL3A1P02461 1466 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-202ENST00000430711 ANTXR1Q9H6X2 564 aa9.22□□□□□ -0.93
COL28A1-202ENST00000430711 PLEKHF1Q96S99 279 aa9.21□□□□□ -0.93
COL28A1-202ENST00000430711 TBC1D2Q9BYX2 928 aa9.21□□□□□ -0.93
COL28A1-202ENST00000430711 USP32Q8NFA0 1604 aa9.21□□□□□ -0.93
COL28A1-202ENST00000430711 CD163L1Q9NR16 1453 aa9.21□□□□□ -0.94
COL28A1-202ENST00000430711 MINK1Q8N4C8 1332 aaPredicted RBP9.21□□□□□ -0.94
COL28A1-202ENST00000430711 PIK3C2BO00750 1634 aa9.21□□□□□ -0.94
COL28A1-202ENST00000430711 U2SURPO15042 1029 aaKnown RBP9.21□□□□□ -0.94
COL28A1-202ENST00000430711 TRIM27P14373 513 aa9.21□□□□□ -0.94
COL28A1-202ENST00000430711 SSH1Q8WYL5 1049 aa9.21□□□□□ -0.94
COL28A1-202ENST00000430711 THUMPD2Q9BTF0 503 aaKnown RBP9.21□□□□□ -0.94
COL28A1-202ENST00000430711 IDI1Q13907 227 aa9.2□□□□□ -0.94
COL28A1-202ENST00000430711 DAXXQ9UER7 740 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-202ENST00000430711 STAC3Q96MF2 364 aa9.19□□□□□ -0.94
COL28A1-202ENST00000430711 TBC1D32Q96NH3 1257 aa9.19□□□□□ -0.94
COL28A1-202ENST00000430711 ANKRD36BQ8N2N9 1353 aa9.19□□□□□ -0.94
COL28A1-202ENST00000430711 MVPQ14764 893 aaKnown RBP9.19□□□□□ -0.94
COL28A1-202ENST00000430711 FBXO31Q5XUX0 539 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-202ENST00000430711 SLC24A1O60721 1099 aa9.18□□□□□ -0.94
COL28A1-202ENST00000430711 SETD1BQ9UPS6 1966 aaKnown RBP9.18□□□□□ -0.94
COL28A1-202ENST00000430711 UBAP1LF5GYI3 381 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 FYB1O15117 783 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 TMPOP42166 694 aaKnown RBP9.17□□□□□ -0.94
COL28A1-202ENST00000430711 TMEM57Q8N5G2 664 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 C1orf115Q9H7X2 142 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 SMC4Q9NTJ3 1288 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 ZRANB1Q9UGI0 708 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 NOB1Q9ULX3 412 aaKnown RBP9.17□□□□□ -0.94
COL28A1-202ENST00000430711 RICTORQ6R327 1708 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 MFAP1P55081 439 aaKnown RBP9.17□□□□□ -0.94
COL28A1-202ENST00000430711 SRPK2P78362 688 aaKnown RBP9.17□□□□□ -0.94
COL28A1-202ENST00000430711 WDR63Q8IWG1 891 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 PRAM1Q96QH2 718 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 DIP2CQ9Y2E4 1556 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 NCKAP5LQ9HCH0 1330 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 MAPK8IP3Q9UPT6 1336 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 LRRC7Q96NW7 1537 aa9.17□□□□□ -0.94
COL28A1-202ENST00000430711 ABCC11Q96J66 1382 aa9.16□□□□□ -0.94
COL28A1-202ENST00000430711 ATAD2Q6PL18 1390 aa9.16□□□□□ -0.94
COL28A1-202ENST00000430711 ITPRIPQ8IWB1 547 aa9.16□□□□□ -0.94
COL28A1-202ENST00000430711 DZIP1LQ8IYY4 767 aaKnown RBP9.16□□□□□ -0.94
COL28A1-202ENST00000430711 PHACTR3Q96KR7 559 aa9.16□□□□□ -0.94
COL28A1-202ENST00000430711 EVC2Q86UK5 1308 aa9.16□□□□□ -0.94
COL28A1-202ENST00000430711 MLH3Q9UHC1 1453 aa9.15□□□□□ -0.94
COL28A1-202ENST00000430711 CCDC27Q2M243 656 aa9.15□□□□□ -0.94
COL28A1-202ENST00000430711 TSPYL6Q8N831 410 aa9.15□□□□□ -0.94
COL28A1-202ENST00000430711 GZF1Q9H116 711 aaPredicted RBP9.15□□□□□ -0.94
COL28A1-202ENST00000430711 NINLQ9Y2I6 1382 aa9.15□□□□□ -0.94
COL28A1-202ENST00000430711 ZKSCAN2Q63HK3 967 aa9.15□□□□□ -0.95
COL28A1-202ENST00000430711 WAPLQ7Z5K2 1190 aa9.15□□□□□ -0.95
COL28A1-202ENST00000430711 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.15□□□□□ -0.95
COL28A1-202ENST00000430711 PANK2Q9BZ23 570 aa9.15□□□□□ -0.95
COL28A1-202ENST00000430711 POTEMA6NI47 508 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 ELL2O00472 640 aaPredicted RBP9.14□□□□□ -0.95
COL28A1-202ENST00000430711 CD2BP2O95400 341 aaKnown RBP9.14□□□□□ -0.95
COL28A1-202ENST00000430711 HMOX1P09601 288 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 FTSJ3Q8IY81 847 aaKnown RBP9.14□□□□□ -0.95
COL28A1-202ENST00000430711 MED14O60244 1454 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 HSPA1LP34931 641 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 RIPK4P57078 832 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 PMFBP1Q8TBY8 1022 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 LNPKQ9C0E8 428 aa9.14□□□□□ -0.95
COL28A1-202ENST00000430711 TMEM131LA2VDJ0 1609 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 ANKRD26Q9UPS8 1709 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 CFAP53Q96M91 514 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 RRAGDQ9NQL2 400 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-202ENST00000430711 CABP1Q9NZU7 370 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 CAPN15O75808 1086 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 ATF7IPQ6VMQ6 1270 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 ZNF692Q9BU19 519 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-202ENST00000430711 MYH16Q9H6N6 1097 aa9.13□□□□□ -0.95
COL28A1-202ENST00000430711 ZBTB40Q9NUA8 1239 aa9.12□□□□□ -0.95
COL28A1-202ENST00000430711 ZNF219Q9P2Y4 722 aaPredicted RBP9.12□□□□□ -0.95
COL28A1-202ENST00000430711 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms