RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 SLC24A1O60721 1099 aa26.16■■□□□ 1.78
SHH-202ENST00000430104 TMF1P82094 1093 aa26.16■■□□□ 1.78
SHH-202ENST00000430104 NGLY1Q96IV0 654 aa26.16■■□□□ 1.78
SHH-202ENST00000430104 AKAP12Q02952 1782 aa26.15■■□□□ 1.78
SHH-202ENST00000430104 AFF2P51816 1311 aa26.14■■□□□ 1.78
SHH-202ENST00000430104 ABCA3Q99758 1704 aa26.14■■□□□ 1.78
SHH-202ENST00000430104 EIF4G2P78344 907 aaKnown RBP eCLIP26.13■■□□□ 1.77
SHH-202ENST00000430104 ABTB2Q8N961 1025 aa26.13■■□□□ 1.77
SHH-202ENST00000430104 SLC12A5Q9H2X9 1139 aa26.13■■□□□ 1.77
SHH-202ENST00000430104 USP6P35125 1406 aa26.13■■□□□ 1.77
SHH-202ENST00000430104 POTEAQ6S8J7 498 aa26.12■■□□□ 1.77
SHH-202ENST00000430104 HSPA5P11021 654 aaKnown RBP26.11■■□□□ 1.77
SHH-202ENST00000430104 PUS7Q96PZ0 661 aaKnown RBP26.11■■□□□ 1.77
SHH-202ENST00000430104 ZNF772Q68DY9 489 aaPredicted RBP26.1■■□□□ 1.77
SHH-202ENST00000430104 ZNF692Q9BU19 519 aaPredicted RBP26.1■■□□□ 1.77
SHH-202ENST00000430104 KTN1Q86UP2 1357 aaKnown RBP26.08■■□□□ 1.77
SHH-202ENST00000430104 HDGFL2Q7Z4V5 671 aaPredicted RBP26.07■■□□□ 1.76
SHH-202ENST00000430104 CRYBG1Q9Y4K1 1723 aa26.07■■□□□ 1.76
SHH-202ENST00000430104 CPSF1Q10570 1443 aaKnown RBP26.06■■□□□ 1.76
SHH-202ENST00000430104 MON2Q7Z3U7 1717 aa26.06■■□□□ 1.76
SHH-202ENST00000430104 BRD4O60885 1362 aaPredicted RBP26.06■■□□□ 1.76
SHH-202ENST00000430104 CDCA8Q53HL2 280 aa26.05■■□□□ 1.76
SHH-202ENST00000430104 USP21Q9UK80 565 aa26.05■■□□□ 1.76
SHH-202ENST00000430104 CD163L1Q9NR16 1453 aa26.04■■□□□ 1.76
SHH-202ENST00000430104 PHRF1Q9P1Y6 1649 aaKnown RBP26.04■■□□□ 1.76
SHH-202ENST00000430104 POLR3GLQ9BT43 218 aa26.04■■□□□ 1.76
SHH-202ENST00000430104 TERF2IPQ9NYB0 399 aa26.04■■□□□ 1.76
SHH-202ENST00000430104 TTC21BQ7Z4L5 1316 aa26.04■■□□□ 1.76
SHH-202ENST00000430104 NLRP6P59044 892 aa26.03■■□□□ 1.76
SHH-202ENST00000430104 NLRP13Q86W25 1043 aa26.03■■□□□ 1.76
SHH-202ENST00000430104 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.03■■□□□ 1.76
SHH-202ENST00000430104 SSH2Q76I76 1423 aa26.03■■□□□ 1.76
SHH-202ENST00000430104 NRKQ7Z2Y5 1582 aa26.02■■□□□ 1.76
SHH-202ENST00000430104 A0A1W2PP64 1363 aa26.01■■□□□ 1.75
SHH-202ENST00000430104 PIK3C2AO00443 1686 aa26.01■■□□□ 1.75
SHH-202ENST00000430104 FNBP4Q8N3X1 1017 aaPredicted RBP26.01■■□□□ 1.75
SHH-202ENST00000430104 QTRT2Q9H974 415 aaKnown RBP26.01■■□□□ 1.75
SHH-202ENST00000430104 PLCH1Q4KWH8 1693 aa25.99■■□□□ 1.75
SHH-202ENST00000430104 NINLQ9Y2I6 1382 aa25.99■■□□□ 1.75
SHH-202ENST00000430104 FAM83GA6ND36 823 aa25.99■■□□□ 1.75
SHH-202ENST00000430104 ZC3H6P61129 1189 aaKnown RBP25.99■■□□□ 1.75
SHH-202ENST00000430104 TTC21AQ8NDW8 1320 aa25.98■■□□□ 1.75
SHH-202ENST00000430104 USP19O94966 1318 aa25.96■■□□□ 1.75
SHH-202ENST00000430104 RXRBP28702 533 aa25.96■■□□□ 1.75
SHH-202ENST00000430104 PRDM11Q9NQV5 511 aa25.96■■□□□ 1.75
SHH-202ENST00000430104 ZRANB1Q9UGI0 708 aa25.95■■□□□ 1.74
SHH-202ENST00000430104 TRPC5Q9UL62 973 aaPredicted RBP25.95■■□□□ 1.74
SHH-202ENST00000430104 BCL9LQ86UU0 1499 aa25.95■■□□□ 1.74
SHH-202ENST00000430104 COL14A1Q05707 1796 aaKnown RBP25.95■■□□□ 1.74
SHH-202ENST00000430104 KIAA0232Q92628 1395 aa25.95■■□□□ 1.74
SHH-202ENST00000430104 SLIT2O94813 1529 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 MYOM1P52179 1685 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 ZBTB7CA1YPR0 619 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 GCP02774 474 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 CHRNA2Q15822 529 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 NME9Q86XW9 330 aa25.94■■□□□ 1.74
SHH-202ENST00000430104 EDC4Q6P2E9 1401 aaKnown RBP25.94■■□□□ 1.74
SHH-202ENST00000430104 SOX12O15370 315 aa25.93■■□□□ 1.74
SHH-202ENST00000430104 UNC5CLQ8IV45 518 aa25.93■■□□□ 1.74
SHH-202ENST00000430104 ANKRD36BQ8N2N9 1353 aa25.93■■□□□ 1.74
SHH-202ENST00000430104 NWD2Q9ULI1 1742 aa25.92■■□□□ 1.74
SHH-202ENST00000430104 BTG4Q9NY30 223 aa25.92■■□□□ 1.74
SHH-202ENST00000430104 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.91■■□□□ 1.74
SHH-202ENST00000430104 ATRNO75882 1429 aa25.9■■□□□ 1.74
SHH-202ENST00000430104 RBM6P78332 1123 aaKnown RBP25.9■■□□□ 1.74
SHH-202ENST00000430104 SLIT3O75094 1523 aa25.89■■□□□ 1.74
SHH-202ENST00000430104 C11orf95C9JLR9 678 aaPredicted RBP25.89■■□□□ 1.74
SHH-202ENST00000430104 CCDC9Q9Y3X0 531 aaKnown RBP25.89■■□□□ 1.74
SHH-202ENST00000430104 NRAPQ86VF7 1730 aa25.87■■□□□ 1.73
SHH-202ENST00000430104 USP31Q70CQ4 1352 aa25.85■■□□□ 1.73
SHH-202ENST00000430104 KCNH5Q8NCM2 988 aa25.85■■□□□ 1.73
SHH-202ENST00000430104 GJD4Q96KN9 370 aaPredicted RBP25.85■■□□□ 1.73
SHH-202ENST00000430104 CPDO75976 1380 aa25.84■■□□□ 1.73
SHH-202ENST00000430104 STRN4Q9NRL3 753 aa25.84■■□□□ 1.73
SHH-202ENST00000430104 USP54Q70EL1 1684 aa25.83■■□□□ 1.73
SHH-202ENST00000430104 VPS72Q15906 364 aa25.82■■□□□ 1.72
SHH-202ENST00000430104 CARD14Q9BXL6 1004 aa25.82■■□□□ 1.72
SHH-202ENST00000430104 EVA1CP58658 441 aa25.81■■□□□ 1.72
SHH-202ENST00000430104 KIF20BQ96Q89 1820 aa25.8■■□□□ 1.72
SHH-202ENST00000430104 SOCS7O14512 581 aa25.8■■□□□ 1.72
SHH-202ENST00000430104 COG3Q96JB2 828 aa25.8■■□□□ 1.72
SHH-202ENST00000430104 GGNBP2Q9H3C7 697 aa25.8■■□□□ 1.72
SHH-202ENST00000430104 NSD3Q9BZ95 1437 aa25.8■■□□□ 1.72
SHH-202ENST00000430104 GLI3P10071 1580 aa25.79■■□□□ 1.72
SHH-202ENST00000430104 CAMTA1Q9Y6Y1 1673 aa25.79■■□□□ 1.72
SHH-202ENST00000430104 NFAT5O94916 1531 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 LMO7Q8WWI1 1683 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 RGPD5Q99666 1765 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 KIF7Q2M1P5 1343 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 OVOS2A0A0J9YW53 1432 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 RGS12O14924 1447 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 OVOS2Q6IE36 1432 aa25.78■■□□□ 1.72
SHH-202ENST00000430104 CDK12Q9NYV4 1490 aaPredicted RBP25.78■■□□□ 1.72
SHH-202ENST00000430104 FYB1O15117 783 aa25.77■■□□□ 1.72
SHH-202ENST00000430104 ARHGEF25Q86VW2 580 aa25.77■■□□□ 1.72
SHH-202ENST00000430104 LTN1O94822 1766 aa25.77■■□□□ 1.72
SHH-202ENST00000430104 PANK3Q9H999 370 aa25.76■■□□□ 1.71
SHH-202ENST00000430104 COL18A1P39060 1754 aa25.76■■□□□ 1.71
SHH-202ENST00000430104 AATKQ6ZMQ8 1374 aa25.75■■□□□ 1.71
SHH-202ENST00000430104 USP35Q9P2H5 1018 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms